an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

hydroxylamine

(S)-3-methyl-2-oxopentanoate

4-amino-4-deoxychorismate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

phenyl phosphate

citrate

3-methyl-2-oxobutanoate

histidinal

N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

(2S)-2-isopropylmalate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

3-dehydroquinate

5-enolpyruvoyl-shikimate 3-phosphate

3-dehydroshikimate

L-β-lysine

N-acetyl-L-glutamate 5-semialdehyde

5-(methylsulfanyl)-ribulose 1-phosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

5-deoxy-α-ribose 1-phosphate

shikimate

shikimate 3-phosphate

3'-phosphoadenylyl-sulfate

4-pyridoxolactone

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

squalene

hop-22(29)-ene

isopentenyl diphosphate

ammonia

O-acetyl-L-serine

4'-phosphopantetheine

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

(S)-2,3,4,5-tetrahydrodipicolinate

2-oxopent-4-enoate

(S)-4-hydroxy-2-oxopentanoate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(4S)-4-hydroxy-2-oxoheptanedioate

(S)-dihydroorotate

carbamoyl phosphate

imidazole acetol-phosphate

carbonic acid

nicotinate adenine dinucleotide

γ-L-glutamyl 5-phosphate

2-O-(6-phospho-α-D-mannosyl)-D-glycerate

L-histidinol phosphate

histidinol

coenzyme B

CoB-CoM heterodisulfide

methanophenazine

dihydromethanophenazine

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

prephenate

3-deoxy-D-arabino-heptulosonate 7-phosphate

anthranilate

γ-butyrobetaine

4,8,12-trimethyltridecanoyl-CoA

3-oxopristanoyl-CoA

coproporphyrinogen III

urea

S-adenosyl 3-(methylsulfanyl)propylamine

S-methyl-5'-thioadenosine

coenzyme F₃₉₀-A

orotidine 5'-phosphate

N-(5-phosphoribosyl)-anthranilate

pimeloyl-CoA

dethiobiotin

(S)-2-amino-6-oxohexanoate

8-amino-7-oxononanoate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

7,8-diaminopelargonate

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

selenophosphate

carbon monoxide

5,6-dimethylbenzimidazole

β-nicotinate D-ribonucleotide

α-ribazole

α-ribazole 5'-phosphate

DNA without lesion

5-phospho-β-D-ribosylamine

M_LPS

core oligosaccharide-lipid A (E. coli K-12 core type)

hydrogen peroxide

4-methyl-2-oxopentanoate

4-aminobutanoate

succinate semialdehyde

3-oxopropanoate

acetoacetate

(L-threonylcarbamoyl)adenylate

dihydroxyacetone

glycerone phosphate

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

oxaloacetate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

oxalosuccinate

CO₂

H₂

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

benzoylsuccinyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

(E)-2-benzylidenesuccinyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

2,3-didehydroadipyl-CoA

D-erythro-imidazole-glycerol-phosphate

phosphoenolpyruvate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

H₂O

bisorganyltrisulfane

enol-phenylpyruvate

pyruvic oxime

1-piperideine 6-carboxylate

(4-hydroxyphenyl)acetate

3-hydroxy-5- oxohexanoyl-CoA

3-hydroxy-5-oxohexanoate

dihydrophloroglucinol

phloroglucinol

pyrogallol

1,2,3,5-tetrahydroxybenzene

gallate

butanoyl phosphate

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

propan-2-ol

selenodiglutathione

glutathioselenol

2-iminoacetate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

(2R,4S)-2, 4-diaminopentanoate

(2R)-2-amino-4-oxopentanoate

(S)-5-amino-3-oxohexanoate

(3S,5S)-3,5-diaminohexanoate

N⁵-carboxyaminoimidazole ribonucleotide

glutathione disulfide

mesaconate

dialurate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

hydrogen selenide

2-amino-3-carboxymuconate-6-semialdehyde

4-amino-2-methyl-5-pyrimidinemethanol

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

5-aminopentanoate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

acetyl phosphate

hydroxypyruvate

3-phosphooxypyruvate

5-methylcytosine

2-dehydro-3-deoxy-D-gluconate

4-guanidinobutyramide

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

β-D-fructose 2,6-bisphosphate

quinolinate

(R)-pantothenate

N-acetylglutamyl-phosphate

N²-succinyl-L-ornithine

N²-succinyl-L-glutamate 5-semialdehyde

O-ureido-L-homoserine

L-arginino-succinate

canavaninosuccinate

L-canavanine

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

α-D-glucosamine 1-phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

1,4-dihydroxy-2-naphthoate

2-oleoylglycerol

(R)-2,3-dihydroxy-3-methylpentanoate

6-phospho D-glucono-1,5-lactone

D-gluconate 6-phosphate

2-C-methyl-D-erythritol 4-phosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

(R)-1-amino-2-propanol O-2-phosphate

prenyl diphosphate

cyclohex-1,5-diene-1-carbonyl-CoA

itaconate

2-hydroxy-6-oxocyclohexane-1-carbonyl-CoA

3-hydroxypimeloyl-CoA

6-hydroxycyclohex-1-ene-1-carbonyl-CoA

6-oxocyclohex-1-ene-1-carbonyl-CoA

2-dehydropantoate

porphobilinogen

preuroporphyrinogen

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

xanthine

DNA with lesion

phenylacetate

ethylphosphate

Mg-protoporphyrin

adenosylcobalamin

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

3,8-divinyl protochlorophyllide a

magnesium-protoporphyrin IX 13-monomethyl ester

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

chlorophyllide a

protochlorophyllide a

cobalt-factor III

cobalt-sirohydrochlorin

cobalt-precorrin-7

cobalt-precorrin-8

adenosyl-cobinamide phosphate

adenosylcobyrate

cob(I)alamin

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

cobalt-precorrin-6B

cobalt-precorrin-3

cobalt-precorrin-4

cobalt-precorrin-5A

cobalt-precorrin-5B

cobalt-precorrin-6A

protoheme

N₂

protoporphyrinogen IX

protoporphyrin IX

uroporphyrinogen-I

coproporphyrinogen I

uroporphyrinogen-III

oxygen

hydrogen sulfide

sn-glycerol 3-phosphate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

(2R)-2,3-dihydroxy-3-methylbutanoate

1-oleoyl-2-lyso-glycerone phosphate

(S)-citramalate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

5,10-methenyltetrahydrofolate mono-L-glutamate

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

(R)-2-hydroxyglutarate

superoxide

hydroxyl radical

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

dimethyl sulfide

methanethiol

glutathione

S-sulfanylglutathione

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

coenzyme M

L-cysteate

3-sulfopyruvate

Fe³⁺

H⁺

ammonium

Mg²⁺

Mn²⁺

Zn²⁺

Cu²⁺

Mo²⁺

Ni²⁺

Fe²⁺

Co²⁺

trimethyl sulfonium

selenate

selenide

hydrogencarbonate

nitrite

nitrate

sulfite

trithionate

OH^-

hydrogensulfite

molybdate

tungstate

sulfate

selenite

thiosulfate

phosphate

diphosphate

triphosphate

(2Z)-2-aminobut-2-enoate

agmatine

putrescine

spermidine

cadaverine

glycine betaine

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

nicotinamide

ethene

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

3'-dephospho-CoA

α-linolenoyl-CoA

linoleoyl-CoA

γ-butyrobetainyl-CoA

L-carnitinyl-CoA

4-hydroxybenzoyl-CoA

benzoyl-CoA

succinyl-CoA

malonyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

6-cis, 3-oxo-tridecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3R)-hydroxy-5-trans-dodecenoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

methylacrylyl-CoA

(2E,5Z)-tetradecenoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

(3S)-hydroxyadipyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-hydroxyisovaleryl-CoA

(E)-2-methylcrotonoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

2-trans-nonenoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

phenylacetyl-CoA

(S)-3-aminobutanoyl-CoA

isobutanoyl-CoA

2-methylbutanoyl-CoA

4-hydroxybutanoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(R)-2-hydroxyglutaryl-CoA

(E)-glutaconyl-CoA

itaconyl-CoA

(R)-methylmalonyl-CoA

(S)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E)-octadec-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(Z)-15-tetracosenoyl-CoA

cerotoyl-CoA

2-carboxy-cerotoyl-CoA

butanoyl-CoA

propanoyl-CoA

decanoyl-CoA

octanoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

3-oxoadipyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

3-oxooctanoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-palmitoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

FMNH₂

FMN

FADH₂

FAD

(S)-NADHX

(R)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

menaquinol-8

menaquinol-7

menaquinol-9

menaquinol-6

menaquinol-10

menaquinol-11

menaquinol-12

menaquinol-13

demethylmenaquinol-8

demethylmenaquinol-7

demethylmenaquinol-9

demethylmenaquinol-6

demethylmenaquinol-10

demethylmenaquinol-11

demethylmenaquinol-12

demethylmenaquinol-13

coenzyme A

oxidized coenzyme F₄₂₀-2

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

thiamine

nicotinate

riboflavin

pyridoxal

pyridoxal 5'-phosphate

pyridoxamine 5'-phosphate

L-carnitine

menadione

(S)-1-pyrroline-5-carboxylate

precorrin-6B

precorrin-6A

precorrin-1

precorrin-2

precorrin-3A

precorrin-7

precorrin-8x

sirohydrochlorin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-phosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

guanine

adenine

2'-deoxyadenosine

2'-deoxyinosine

2'-deoxyguanosine

adenosine

guanosine

xanthosine

inosine

hypoxanthine

dIMP

dAMP

dGMP

dITP

dATP

dGTP

dADP

dGDP

dIDP

GDP

ADP

IDP

GMP

XMP

AMP

IMP

ITP

XTP

GTP

ATP

CDP

dCDP

orotate

uracil

UDP

dCMP

dUMP

UTP

CTP

cytosine

dTDP

dTTP

dCTP

dUDP

dTMP

dUTP

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-glucose

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

5-fluorouracil

uridine

cytidine

thymidine

2'-deoxyuridine

2'-deoxycytidine

thymine

CMP

UMP

isoguanine

preQ₁

preQ₀

3-hexaprenyl-4-hydroxybenzoate

4-hydroxybenzoate

urate

futalosine

dehypoxanthine futalosine

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

menadiol

4-methylphenol

4-aminobenzoate

benzoate

chorismate

fumarate

succinate

L-aspartate

(S)-malate

(2R)-homocitrate

cis-homoaconitate

cis-aconitate

D-threo-isocitrate

4-hydroxybutanoate

(S)-lactate

(R)-lactate

formate

pyruvate

acetate

propanoate

butanoate

decanoate

octanoate

(15Z)-tetracosenoate

oleate

(3E,5Z)-tetradecadienoate

linoleate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

phytenate

pristanate

palmitate

(R)-pantoate

D-tagaturonate

aldehydo-D-galacturonate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

2-oxobutanoate

4-(methylsulfanyl)-2-oxobutanoate

2-oxoglutarate

glyoxylate

L-α-amino-ε-keto-pimelate

L-serine

(R)-β-lysine

β-alanine

(S)-3-amino-2-methylpropanoate

L-proline

L-leucine

glycine

L-glutamine

L-alanine

D-glutamate

L-glutamate

L-histidine

L-lysine

L-arginine

L-asparagine

L-threonine

L-tyrosine

L-cysteine

L-tryptophan

L-phenylalanine

D-alanine

D-aspartate

D-proline

D-ornithine

L-aspartyl-4-phosphate

(2S, 3S)-3-methylaspartate

N-acetyl-L-ornithine

N-acetyl-L-methionine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

L-proline betaine

N^ω-phospho-L-arginine

L-threonine 3-O-phosphate

3-phospho-L-serine

L-citrulline

L-valine

L-isoleucine

O-phospho-L-homoserine

L-homoserine

L-aspartate 4-semialdehyde

L-ornithine

L-homocysteine

L-glutamate-5-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-canaline

meso-diaminopimelate

L-selenocysteine

L-methionine

L,L-diaminopimelate

diacetyl

acetone

6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone

3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone

glycolaldehyde

acetaldehyde

butan-1-al

1-propanal

α-D-glucopyranose

β-D-glucopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

ethanol

butan-1-ol

myo-inositol

1D-myo-inositol 3-monophosphate

1D-myo-inositol 1-monophosphate

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

1-oleoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

(2E,6E)-farnesyl diphosphate

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

phytyl diphosphate

3-nonaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-nonaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-decaprenyl diphosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

1-(β-D ribofuranosyl)nicotinamide

maltotriose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

sucrose

colanic acid

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

β-D-fructofuranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

GDP-α-D-glucose

GDP-α-D-mannose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

D-altronate

1-(5-phospho-β-D-ribosyl)-AMP

pppGpp

1-(5-phospho-β-D-ribosyl)-ATP

5'-deoxyadenosine

adenylo-succinate

8-oxo-GTP

8-oxo-dGTP

ppGpp

(5R)-5,6-dihydro-5-(thymidin-7-yl)thymidine (in DNA)

two adjacent thymidines in DNA

5-fluorocytosine

2-hydroxy-dATP

5-hydroxy-CTP

β-nicotinamide D-ribonucleotide

cyclic di-3',5'-guanylate

2-iminobutanoate

2-iminosuccinate