an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

adenosine 5'-phosphosulfate

3'-phosphoadenylyl-sulfate

2-maleylacetate

(S)-dihydroorotate

S-methyl-5-thio-α-D-ribose 1-phosphate

5-deoxy-α-ribose 1-phosphate

L-arginino-succinate

canavaninosuccinate

L-canavanine

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

5-hydroxytryptophol

indole-3-glycol

indole-3-glycol aldehyde

isobutanol

3-methylbutanol

3-methylbutanal

2-methylbutanol

2-methylbutanal

2-phenylethanol

carbonic acid

2-phosphoglycolate

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-phosphooxypyruvate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

2-(α-hydroxyethyl)thiamine diphosphate

pimeloyl-CoA

8-amino-7-oxononanoate

D-erythro-imidazole-glycerol-phosphate

N-acetylglutamyl-phosphate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

3-dehydroquinate

acetyl phosphate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

6-phospho D-glucono-1,5-lactone

acrylamide

acrylate

4-guanidinobutanoate

(indol-3-yl)acetamide

propionamide

(R)-pantothenate

N-acetyl-D-muramate 6-phosphate

H₂

orotidine 5'-phosphate

thiamine phosphate

thiamine diphosphate

imidazole acetaldehyde

4-imidazoleacetate

5-hydroxyindole acetaldehyde

5-hydroxyindole acetate

3-methoxy-4-hydroxyphenylglycolaldehyde

3,4-dihydroxyphenylacetaldehyde

prop-2-ynal

propynoate

D-glucurono-6,3-lactone

4-acetamidobutanal

4-acetamidobutanoate

dimethylsulfoniopropanoate

S-adenosyl 3-(methylsulfanyl)propylamine

S-methyl-5'-thioadenosine

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

D-gluconate 6-phosphate

carbon monoxide

α-ribazole

α-ribazole 5'-phosphate

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

shikimate

3-dehydroshikimate

3-amino-1-hydroxyacetone 1-phosphate

isopentenyl diphosphate

2-(β-D-glucosyl)-sn-glycerol 3-phosphate

2-O-(β-D-glucopyranosyl)-glycerol

3-deoxy-D-arabino-heptulosonate 7-phosphate

homogentisate

(2-hydroxyphenyl)acetate

(2S)-2-isopropylmalate

β-D-fructose 2,6-bisphosphate

coproporphyrinogen III

L-histidinol phosphate

histidinol

ADP-L-glycero-β-D-manno-heptose

S-formylglutathione

N¹-(5-phospho-β-D-ribosyl)glycinamide

prephenate

acetoacetate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

lipid X

lipid A disaccharide (E. coli)

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

glycerone phosphate

quinolinate

(S)-3-methyl-2-oxopentanoate

4-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

1,4-dihydroxy-2-naphthoyl-CoA

2-O-(6-phospho-α-D-mannosyl)-D-glycerate

preuroporphyrinogen

DNA without lesion

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

2-oxopent-4-enoate

(S)-4-hydroxy-2-oxopentanoate

prenyl diphosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

2-C-methyl-D-erythritol 4-phosphate

carbamoyl phosphate

O-ureido-L-homoserine

phosphoenolpyruvate

4-hydroxy-2-nonenal

cyanate

2-chloroethanol

chloroacetaldehyde

dihydroxyacetone

porphobilinogen

hydroxypyruvate

oxaloacetate

citrate

N-(5-phosphoribosyl)-anthranilate

anthranilate

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

hydrogen peroxide

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

5-phospho-β-D-ribosylamine

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

urea

4-amino-4-deoxychorismate

arsenite

4-guanidinobutyramide

CO₂

γ-L-glutamyl 5-phosphate

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

5-methylcytosine

H₂O

phosphite

enol-phenylpyruvate

5-hydroxyindole thiazolidine carboxylate

(4-hydroxyphenyl)acetate

ammonia

lipid IV_A

propan-2-ol

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

propanoyl phosphate

4-amino-2-methyl-5-pyrimidinemethanol

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

2-amino-3-carboxymuconate-6-semialdehyde

N⁵-carboxyaminoimidazole ribonucleotide

5,6-dimethylbenzimidazole

dialurate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

1,6-anhydro-N-acetyl-β-muramate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

selenodiglutathione

glutathioselenol

glutathione disulfide

(2S)-lactyl-2-diphospho-5'-guanosine

glycolate

7,8-didemethyl-8-hydroxy-5-deazariboflavin

oxalate

adenosine 5'-phosphoselenate

isochorismate

1,4-dihydroxy-2-naphthoate

(L-threonylcarbamoyl)adenylate

4-aminobutanoate

hydrogen selenide

2-dehydropantoate

4-pyridoxolactone

(lipoyl)adenylate

(5S)-5-benzyl-hydantoin

(5R)-5-benzyl-hydantoin

(S)-5-hydroxyisourate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

oxalosuccinate

α-D-glucosamine 1-phosphate

(R)-1-amino-2-propanol O-2-phosphate

histidinal

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-succinylbenzoate

N²-succinyl-L-ornithine

N²-succinyl-L-glutamate 5-semialdehyde

N-acetyl-L-glutamate 5-semialdehyde

L-selenocystathionine

(S)-2,3,4,5-tetrahydrodipicolinate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

imidazole acetol-phosphate

adenosine 3',5'-bisphosphate

(S)-ureidoglycolate

4'-phosphopantetheine

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

ethanolamine

O-acetyl-L-serine

2-oleoylglycerol

7,8-diaminopelargonate

dethiobiotin

(R)-2,3-dihydroxy-3-methylpentanoate

formamide

methylamine

N-ethylglycine

ethylamine

2-iminoacetate

prephytoene diphosphate

squalene

presqualene diphosphate

ethylphosphate

chlorophyll a

chlorophyllide a

protochlorophyllide a

adenosylcobyrate

cob(I)alamin

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

adenosyl-cobinamide phosphate

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

adenosylcobalamin

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

Mg-protoporphyrin

cobalt-factor III

cobalt-precorrin-3

cobalt-sirohydrochlorin

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-5A

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

3,8-divinyl protochlorophyllide a

magnesium-protoporphyrin IX 13-monomethyl ester

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

protoheme

uroporphyrinogen-III

protoporphyrinogen IX

protoporphyrin IX

uroporphyrinogen-I

coproporphyrinogen I

(Z,Z)-biliverdin-IX α

(2R,3Z)-phycocyanobilin

hydrogen sulfide

oxygen

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2S)-2-phospholactate

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

N-acetyl-D-mannosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

N-acetyl-β-neuraminate 9-phosphate

1-oleoyl-2-lyso-glycerone phosphate

CMP-N-acetyl-β-neuraminate

5,10-methenyltetrahydrofolate mono-L-glutamate

2-octaprenylphenol

superoxide

hydroxyl radical

2-iminosuccinate

2-iminobutanoate

2-iminopropanoate

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

N-acetyl-β-neuraminate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

methionol

3-(methylsulfanyl)propanal

3-dimethylsulfoniopropionaldehyde

S-(hydroxymethyl)glutathione

dimethyl sulfide

glutathione

methanethiol

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

L-cysteate

3-sulfopyruvate

(R)-S-lactoylglutathione

Fe³⁺

H⁺

ammonium

Co²⁺

Mg²⁺

Fe²⁺

Mn²⁺

Zn²⁺

trimethyl sulfonium

selenide

nitrite

sulfite

hydrogencarbonate

sulfate

OH^-

hydrogensulfite

nitrate

selenite

selenate

thiosulfate

phosphonate

phosphate

triphosphate

diphosphate

chloride

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

agmatine

spermidine

cadaverine

putrescine

glycine betaine

choline

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphocholine

sn-glycero-3-phosphoethanolamine

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

acetamide

(S)-(+)-allantoin

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

nicotinamide

ethene

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

(indol-3-yl)acetate

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

(3S)-hydroxyadipyl-CoA

3'-dephospho-CoA

α-linolenoyl-CoA

linoleoyl-CoA

malonyl-CoA

succinyl-CoA

acetyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

phytenoyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(Z)-15-tetracosenoyl-CoA

propanoyl-CoA

butanoyl-CoA

octanoyl-CoA

decanoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

3-oxoadipyl-CoA

acetoacetyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

3-oxooctanoyl-CoA

cis-dienelactone

trans-dienelactone

D-glucono-1,5-lactone

FMN

FAD

FMNH₂

(S)-NADHX

(R)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

phylloquinol

ubiquinol-10

ubiquinol-7

ubiquinol-8

ubiquinol-9

menaquinol-8

menaquinol-9

demethylmenaquinol-8

demethylmenaquinol-9

3-demethylubiquinol-10

3-demethylubiquinol-7

3-demethylubiquinol-8

3-demethylubiquinol-9

coenzyme A

(R)-lipoate

oxidized coenzyme F₄₂₀-0

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

riboflavin

nicotinate

thiamine

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxine

pyridoxamine

pyridoxal

menadione

(S)-1-pyrroline-5-carboxylate

precorrin-3A

precorrin-3B

precorrin-1

precorrin-6A

precorrin-4

precorrin-5

precorrin-2

precorrin-6B

precorrin-7

precorrin-8x

sirohydrochlorin

6,7-dimethyl-8-(1-D-ribityl)lumazine

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

adenine

2'-deoxyadenosine

2'-deoxyinosine

2'-deoxyguanosine

adenosine

inosine

dIMP

dGMP

dAMP

dATP

dGTP

dITP

dADP

dGDP

dIDP

IDP

GDP

ADP

IMP

XMP

GMP

AMP

GTP

XTP

ITP

ATP

orotate

CDP

dCMP

dCDP

UDP

UTP

CTP

5,6-dihydrouracil

5,6-dihydrothymine

cytosine

uracil

dTTP

dCTP

dUDP

dUTP

dTDP

dUMP

dTMP

UDP-α-D-glucose

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-galactofuranose

UDP-α-D-galactose

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-α-D-glucose

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

5-fluorouracil

uridine

cytidine

2'-deoxycytidine

2'-deoxyuridine

thymine

CMP

UMP

isoguanine

N¹-methyladenine

N3-methylcytosine

N¹-ethyladenine

preQ₁

(indole-3-yl)acetonitrile

preQ₀

4-tyrosol

salicylaldehyde

3-hexaprenyl-4-hydroxybenzoate

4-hydroxybenzoate

3-methoxy-4-hydroxyphenylglycol

vanillyl mandelate

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

benzaldehyde

(indol-3-yl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

menadiol

demethylphylloquinol

4-methylphenol

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxymandelate

3,4-dihydroxyphenylacetate

salicylate

4-aminobenzoate

benzoate

chorismate

fumarate

L-aspartate

succinate

(S)-malate

D-glucarate

(2S,3S)-2-methylcitrate

(2R,3S)-2-methylisocitrate

cis-2-methylaconitate

cis-aconitate

D-threo-isocitrate

(R)-lactate

(S)-lactate

propanoate

formate

pyruvate

acetate

butanoate

octanoate

decanoate

(2E,6E)-farnesoate

(15Z)-tetracosenoate

oleate

γ-linolenate

linoleate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

phytenate

pristanate

palmitate

(R)-pantoate

D-gluconate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

4-(methylsulfanyl)-2-oxobutanoate

glyoxylate

2-oxoglutarate

2-oxobutanoate

carbamate

L-α-amino-ε-keto-pimelate

L-serine

β-alanine

L-proline

L-leucine

glycine

L-alanine

L-glutamine

D-glutamate

L-glutamate

L-histidine

L-lysine

L-arginine

L-threonine

L-tyrosine

L-asparagine

L-cysteine

L-tryptophan

L-phenylalanine

D-alanine

L-aspartyl-4-phosphate

seleno-L-homocysteine

sarcosine

N-acetyl-L-ornithine

N-acetyl-L-glutamate

N-acetyl-L-methionine

N-carbamoyl-L-aspartate

O-acetyl-L-homoserine

L-proline betaine

L-threonine 3-O-phosphate

3-phospho-L-serine

L-citrulline

L-isoleucine

L-valine

L-homocysteine

L-aspartate 4-semialdehyde

O-phospho-L-homoserine

L-ornithine

L-canaline

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-glutamate-5-semialdehyde

L-homoserine

O-succinyl-L-homoserine

S-sulfo-L-cysteine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-selenocysteine

L-methionine

L,L-diaminopimelate

L-cystathionine

methylglyoxal

diacetyl

acetone

glycolaldehyde

(2E,6E)-farnesal

1-propanal

isobutanal

1-octanal

formaldehyde

acetaldehyde

butan-1-al

phytenal

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

α-D-galactopyranose

β-D-galactopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

ethanol

propan-1-ol

methanol

butan-1-ol

phytol

glycerol

myo-inositol

1D-myo-inositol 3-monophosphate

1D-myo-inositol 1-monophosphate

1-oleoyl-sn-glycerol 3-phosphate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

dioleoyl phosphatidate

9,9'-di-cis-ζ-carotene

prolycopene

all-trans-lycopene

all-trans phytofluene

9,15,9'-tri-cis-ζ-carotene

15-cis-phytoene

all-trans-phytoene

geranyl diphosphate

trans,octacis-decaprenyl phosphate

(2E,6E)-farnesyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

phytyl diphosphate

3-decaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-decaprenyl diphosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

heptosyl-Kdo₂-lipid A

(heptosyl)₂-Kdo₂-lipid A

1-(β-D ribofuranosyl)nicotinamide

maltotriose

maltotetraose

maltoheptaose

maltopentaose

maltohexaose

sucrose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-mannosamine

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

β-D-fructofuranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (mycobacteria)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-ribulose-1,5-bisphosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

GDP-α-D-glucose

ADP-α-D-glucose

GDP-α-D-mannose

GDP-4-dehydro-α-D-rhamnose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

4-phospho-D-erythronate

D-sedoheptulose 1,7-bisphosphate

β-D-fructose 1,6-bisphosphate

6-deoxy-5-ketofructose 1-phosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose-1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

1-(5-phospho-β-D-ribosyl)-AMP

adenylo-succinate

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-ATP

8-oxo-GTP

8-oxo-dGTP

5-fluorocytosine

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

2-hydroxy-dATP

5-hydroxy-CTP

β-nicotinamide D-ribonucleotide

cyclic di-3',5'-guanylate

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion