an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
L-selenocystathionine
2-dehydropantoate
6-aminohexanoate linear dimer
6-aminohexanoate
5-dehydro-D-gluconate
2-dehydro-3-deoxy-D-gluconate 6-phosphate
butanoyl phosphate
2-oleoylglycerol
β-D-ribosylnicotinate
4'-phosphopantetheine
hydrogen peroxide
CDP-glycerol
poly (glycerol phosphate)
2-(α-hydroxyethyl)thiamine diphosphate
S-acetyldihydrolipoamide
dihydrolipoamide
lipoamide
2-phosphoglycolate
glycolate
6-phospho D-glucono-1,5-lactone
D-gluconate 6-phosphate
hydrogen selenide
O-acetyl-L-serine
coproporphyrinogen III
tartronate semialdehyde
P1,P4-bis(5'-guanosyl) tetraphosphate
3-deoxy-α-D-manno-2-octulosonate
arsenite
2-keto-D-gluconate
2,5-didehydro-D-gluconate
3-keto-L-gulonate 6-phosphate
1,6-anhydro-N-acetyl-β-muramate
hydroxypyruvate
2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA
citrate
oxaloacetate
3-keto-β-D-galactose
carbamoyl phosphate
carbonic acid
N-acetyl-D-muramate 6-phosphate
D-galactosamine-6-phosphate
N-acetyl-D-galactosamine 6-phosphate
2-amino-2-deoxy-D-gluconate 6-phosphate
phosphocholine
CO2
isopentenyl diphosphate
acetyl phosphate
S-ribosyl-L-homocysteine
β-nicotinate D-ribonucleotide
nicotinate adenine dinucleotide
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
glycerone phosphate
pseudouridine 5'-phosphate
thiamine diphosphate
phosphoenolpyruvate
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
H2O
4-amino-2-methyl-5-pyrimidinemethanol
pseudouridine
autoinducer 2
2-keto-L-gulonate
2-iminoacetate
N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol
ManNAc-GlcNAc-PP-undecaprenol
6-aminohexanoate cyclic dimer
6-oxohexanoate
adipate
L-arginino-succinate
3,5-dihydro-4H-imidazol-4-one
4-aminoimidazole
5-aminoimidazole-4-carboxylate
5-ureidoimidazole-4-carboxylate
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
enol-phenylpyruvate
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
5-hydroxyindole thiazolidine carboxylate
ammonia
(S)-dihydroorotate
oxalosuccinate
acetoacetate
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
H2
carbon monoxide
ethanolamine
α-D-glucosamine 1-phosphate
thiamine phosphate
nitrilotriacetate
iminodiacetate
methylsalicylate
(lipoyl)adenylate
3-methyl-2-oxobutanoate
DNA without lesion
3-carboxy-2,5-dihydro-5-oxofuran-2-acetate
(R)-4'-phosphopantothenoyl-L-cysteine
(R)-pantothenate
(R)-4'-phosphopantothenate
4-methyl-2-oxopentanoate
glutathione disulfide
γ-L-glutamyl 5-phosphate
orotidine 5'-phosphate
salicyl alcohol
β-D-fructose 2,6-bisphosphate
D-glucurono-6,3-lactone
5-hydroxyindole acetate
imidazole acetaldehyde
4-imidazoleacetate
4-acetamidobutanal
4-acetamidobutanoate
dimethylsulfoniopropanoate
prop-2-ynal
propynoate
3,4-dihydroxyphenylacetaldehyde
2-phenylethanol
3-methylbutanol
3-methylbutanal
5-hydroxytryptophol
5-hydroxyindole acetaldehyde
3-methoxy-4-hydroxyphenylglycolaldehyde
isobutanol
2-C-methyl-D-erythritol 4-phosphate
2-methylbutanol
2-methylbutanal
indole-3-glycol
indole-3-glycol aldehyde
(R)-mevalonate
(R)-5-phosphomevalonate
(R)-mevalonate diphosphate
prenyl diphosphate
(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate
(4,5-dihydro-5-oxofuran-2-yl)-acetate
xanthine
(2E,6E)-farnesyl diphosphate
2-iminopropanoate
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
D-alanyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
sn-glycerol 3-phosphate
(R)-glycerate
2,3-diphospho-D-glycerate
3-phospho-D-glyceroyl-phosphate
3-phospho-D-glycerate
2-phospho-D-glycerate
α-D-glucosamine 6-phosphate
N-acetyl-D-mannosamine 6-phosphate
superoxide
5,10-methenyltetrahydrofolate mono-L-glutamate
D-alanyl-D-lactate
DNA with lesion
protoheme
hydrogen cyanide
protoporphyrinogen IX
protoporphyrin IX
uroporphyrinogen-III
hydrogen sulfide
oxygen
preQ0
L-homocysteine
4-methylphenol
coenzyme A
(R)-lipoate
7,8-dihydrofolate monoglutamate
5,6,7,8-tetrahydrofolate
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl mono-L-glutamate
10-formyl-tetrahydrofolate mono-L-glutamate
5,10-methylenetetrahydropteroyl mono-L-glutamate
(6S)-5-formyl-tetrahydrofolate mono-L-glutamate
FMN
FAD
FMNH2
(S)-NADHX
(R)-NADHX
NAD+
NADP+
NADH
NADPH
glycine betaine
riboflavin
thiamine
nicotinamide
nicotinate
all-trans-retinal
all-trans-retinol
Gro-P-ManNAc-GlcNAc-PP-undecaprenol
L-serine
β-alanine
D-glutamate
L-glutamate
L-arginine
L-lysine
L-proline
L-glutamine
glycine
L-alanine
L-leucine
L-aspartate
L-tyrosine
L-asparagine
L-cysteine
L-phenylalanine
D-alanine
D-aspartate
seleno-L-homocysteine
N-formimino-glycine
N-carbamoyl-L-aspartate
L-valine
L-selenocysteine
L-methionine
L-cystathionine
L-ornithine
L-citrulline
S-sulfo-L-cysteine
S-adenosyl-L-methionine
S-adenosyl-L-homocysteine
L-glutamate-5-semialdehyde
meso-diaminopimelate
D-glucarate
fumarate
(S)-malate
(R)-lactate
(S)-lactate
acetate
pyruvate
formate
butanoate
octanoate
(2E,6E)-farnesoate
3-oxoadipate
3-phenyl-2-oxopropanoate
glyoxylate
2-oxoglutarate
protocatechuate
salicylate
benzoate
palmitate
oleate
phytenate
leukotriene-D4
leukotriene-E4
(R)-pantoate
D-gluconate
fluoroacetate
orotate
(S)-1-pyrroline-5-carboxylate
cis-aconitate
3-carboxy-cis,cis-muconate
D-threo-isocitrate
methylglyoxal
fluoroacetaldehyde
salicylaldehyde
(2E,6E)-farnesal
phytenal
acetaldehyde
butan-1-al
formaldehyde
1-octanal
1-propanal
isobutanal
(S)-lactaldehyde
benzaldehyde
phenylacetaldehyde
(4-hydroxyphenyl)acetaldehyde
D-glyceraldehyde
α-D-galactopyranose
β-D-galactopyranose
β-D-glucopyranose
α-D-glucopyranose
β-D-ribopyranose
aldehydo-D-ribose
β-D-ribofuranose
α-D-ribofuranose
1-(β-D ribofuranosyl)nicotinamide
β-D-fructofuranose
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetylmuramate
N-acetyl-α-D-glucosamine 1-phosphate
N-acetyl-β-D-mannosamine
N-acetyl-β-D-glucosamine
N-acetyl-β-neuraminate
glycerol
XXLG xyloglucan oligosaccharide
XLXG xyloglucan oligosaccharide
XLLG xyloglucan oligosaccharide
XXXG xyloglucan oligosaccharide
maltotetraose
maltotriose
sucrose
allolactose
α-lactose
3'-ketolactose
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
1-O-acetyl-α-maltose
CMP-3-deoxy-β-D-manno-octulosonate
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
GDP-α-D-mannose
GDP-α-D-glucose
ADP-α-D-glucose
ADP-D-ribose
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-α-D-glucose
UDP-α-D-galactose
UDP-N-acetyl-α-D-mannosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-mannosaminuronate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
sucrose 6F-phosphate
β-D-cellobiose 6'-phosphate
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
a peptidoglycan dimer (S. aureus)
a peptidoglycan dimer (E. faecium, tetrapeptide)
a peptidoglycan dimer (E. faeciums)
a peptidoglycan dimer (mycobacteria)
a peptidoglycan with D,D cross-links (mycobacteria)
a peptidoglycan with L,D cross-links (mycobacteria)
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)5-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine
a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
a peptidoglycan dimer (meso-diaminopimelate containing)
a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)
a peptidoglycan with D,D cross-link (S. aureus)
a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
methyl β-D-glucoside 6-phosphate
α-D-glucopyranose 1-phosphate
D-glyceraldehyde 3-phosphate
arbutin-6-phosphate
salicin 6-phosphate
5-phospho-α-D-ribose 1-diphosphate
D-erythrose 4-phosphate
D-sedoheptulose 7-phosphate
β-D-fructose 1,6-bisphosphate
D-tagatofuranose 1,6-bisphosphate
L-xylulose 5-phosphate
1-deoxy-D-xylulose 5-phosphate
D-xylulose 5-phosphate
L-ribulose 5-phosphate
D-ribulose 5-phosphate
L-ascorbate 6-phosphate
β-D-fructofuranose 6-phosphate
D-fructose 6-phosphate
D-tagatofuranose 6-phosphate
α-D-mannopyranose 6-phosphate
β-D-mannopyranose 6-phosphate
α-D-galactose 6-phosphate
β-D-galactose 6-phosphate
β-D-glucose 6-phosphate
α-D-glucose 6-phosphate
α-D-galactose 1-phosphate
β-D-fructofuranose 1-phosphate
β-D-glucopyranose 1-phosphate
α-D-mannose 1-phosphate
α-D-ribose-1-phosphate
5-fluoro-5-deoxy-D-ribose 1-phosphate
2-deoxy-α-D-ribose 1-phosphate
L-idonate
sn-glycero-3-phosphoethanolamine
glycerophosphoserine
glycerophosphoglycerol
1-oleoyl-2-palmitoyl-phosphatidylglycerol
adenine
guanine
hypoxanthine
purine
dAMP
dGMP
dATP
dGTP
dADP
dGDP
ITP
GTP
ATP
GDP
ADP
XMP
IMP
GMP
AMP
2'-deoxyadenosine
2'-deoxyinosine
2'-deoxyguanosine
guanosine
xanthosine
adenosine
inosine
reduced riboflavin
preQ1
uracil
thymine
uridine 2'3'-cyclic monophosphate
cytidine 2',3'-cyclic monophosphate
dUTP
UTP
dCTP
dTTP
cytidine-3'-monophosphate
uridine 3'-monophosphate
dTDP
CTP
CDP-choline
dCMP
dCDP
UDP
CDP
dUMP
dTMP
dUDP
cytidine
uridine
2'-deoxycytidine
2'-deoxyuridine
thymidine
UMP
CMP
adenosine 2',3'-cyclic monophosphate
guanosine 2',3'-cyclic monophosphate
5'-deoxyadenosine
ppGpp
pppGpp
guanosine 3'-monophosphate
adenosine 3'-monophosphate
adenylo-succinate
cyclic-AMP
5'-chloro-5'-deoxyadenosine
5-chloro-5-deoxyribose 1-phosphate
β-nicotinamide D-ribonucleotide
cyclic di-3',5'-guanylate
5-hydroxy-CTP
5-hydroxy-CMP
5'-deoxy-5'-fluoroadenosine
myo-inositol
1D-myo-inositol 5-monophosphate
1D-myo-inositol 1-monophosphate
1D-myo-inositol 6-monophosphate
1D-myo-inositol 2-monophosphate
1D-myo-inositol 3-monophosphate
1D-myo-inositol 4-monophosphate
phytate
D-myo-inositol (1,2,3,4,5)-pentakisphosphate
hydroquinone
3,4-dihydroxymandelate
3,4-dihydroxyphenylacetate
3,4-dihydroxyphenylglycol
3,4-dihydroxyphenylglycolaldehyde
(3R)-linalool
(3S)-linalool
butan-1-ol
methanol
ethanol
propan-1-ol
phytol
trimethyl sulfonium
sulfite
selenide
thiosulfate
hydrogensulfite
hydrogencarbonate
chloride
phosphonate
phosphate
diphosphate
Fe3+
ammonium
H+
Cu2+
Fe2+
Co2+
Mn2+
Zn2+
3'-dephospho-CoA
acetyl-CoA
(E)-glutaconyl-CoA
(S)-3-hydroxy-3-methylglutaryl-CoA
2-methylacetoacetyl-CoA
isobutanoyl-CoA
crotonyl-CoA
(S)-malyl-CoA
acetoacetyl-CoA
3-oxopentanoyl-CoA
(3R)-3-hydroxybutanoyl-CoA
(S)-3-hydroxybutanoyl-CoA
butanoyl-CoA
propanoyl-CoA
(R)-methylmalonyl-CoA
(S)-methylmalonyl-CoA
all-trans-retinyl palmitate
D-glucono-1,5-lactone
1-oleoyl-sn-glycerol
15,15'-dihydroxy-β-carotene
β-carotene
β-carotene 15,15' epoxide
mono-trans,octa-cis-decaprenyl diphosphate
trans,octacis-decaprenyl phosphate
geranyl diphosphate
ferrichrome
iron(III) dicitrate
ferric-enterobactin complex
dimethyl sulfide
3-dimethylsulfoniopropionaldehyde
methionol
3-(methylsulfanyl)propanal
glutathione
(R)-S-lactoylglutathione
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
L-cysteate
3-sulfopyruvate
thiocyanate
methyl (indol-3-yl)acetate
(indol-3-yl)acetate
(S)-2-chloropropanoate
phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)
di-trans,octa-cis-undecaprenyl diphosphate
di-trans,octa-cis-undecaprenyl phosphate
8-hydroxypurine
6,8-dihydroxypurine
urate
salicyl-6-hydroxy-2-cyclohexene-on-oyl
6-hydroxy-2-cyclohexen-one-carboxylate
4-tyrosol
vanillyl mandelate
3-methoxy-4-hydroxyphenylglycol
(indol-3-yl)acetaldehyde
5-amino-4-imidazolecarboxyamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
6-caprolactam
2-aminoprop-2-enoate
N1-acetylspermidine
N1-acetylspermine
N-acetylputrescine
spermine
putrescine
spermidine