ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C928

CO2

C1427

5-enolpyruvoyl-shikimate 3-phosphate

C11652

shikimate 3-phosphate

C11479

phosphoenolpyruvate

C11543

H2O

C1528

2-dehydropantoate

C3262

3-methyl-2-oxobutanoate

C2586

(E)-4-coumaroyl-CoA

C371

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

C15306

2,3-didehydroadipyl-CoA

C651

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

C184

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

C185

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

C1002

anthranilate

C11946

N-(5-phosphoribosyl)-anthranilate

C3319

4-methyl-2-oxopentanoate

C3417

(S)-3-methyl-2-oxopentanoate

C873

coproporphyrinogen III

C11767

porphobilinogen

C1231

5-aminolevulinate

C1621

(R)-2,3-dihydroxy-3-methylpentanoate

C11557

urocanate

C1285

4-imidazolone-5-propanoate

C1449

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

C12158

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

C12352

(S)-dihydroorotate

C11836

hydroxypyruvate

C12218

α-D-glucosamine 1-phosphate

C10349

glycerone phosphate

C891

citrate

C6444

oxaloacetate

C6361

acetoacetate

C11639

succinate semialdehyde

C1321

4-aminobutanoate

C6349

3-oxopropanoate

C3259

2-oxovalerate

C506

3-ethylmalate

C13786

(2S)-2-isopropyl-3-oxosuccinate

C1530

(2R,3S)-3-isopropylmalate

C12214

(S)-4-amino-5-oxopentanoate

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C1325

4-amino-4-deoxychorismate

C11754

propanoyl phosphate

C3684

3-deoxy-α-D-manno-2-octulosonate

C6099

lipid IVA

C10794

lipid A disaccharide (E. coli)

C12390

D-erythro-imidazole-glycerol-phosphate

C1102

O-acetyl-L-serine

C2169

betaine aldehyde

C12355

dethiobiotin

C12350

7,8-diaminopelargonate

C13627

DNA without lesion

C12162

hydrogen peroxide

C11832

orotidine 5'-phosphate

C12044

L-histidinol phosphate

C12125

imidazole acetol-phosphate

C11760

prephenate

C1353

3-phosphooxypyruvate

C638

5-(methylsulfanyl)-ribulose 1-phosphate

C14053

S-methyl-5-thio-α-D-ribose 1-phosphate

C13649

N-ethylammeline

C13650

deethylsimazine

C11483

glycolate

C11493

2-phosphoglycolate

C1548

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

C1631

3-amino-1-hydroxyacetone 1-phosphate

C1265

4-phosphooxy-L-threonine

C3888

7-carboxy-7-deazaguanine

C12096

isochorismate

C13895

(2,3-dihydroxybenzoyl)adenylate

C11995

(L-seryl)adenylate

C14074

prenyl diphosphate

C13225

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

C11800

(R)-pantothenate

C1438

(2S)-2-isopropylmalate

C6369

(S)-2-aceto-2-hydroxybutanoate

C6359

(S)-2-acetolactate

C12337

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

C12192

carbonic acid

C11895

N-Formyl-L-kynurenine

C1415

3-hydroxyanthranilate

C10260

ADP-D-glycero-β-D-manno-heptose

C12393

D-glycero-β-D-manno-heptose 1-phosphate

C12392

D-glycero-β-D-manno-heptose 1,7-bisphosphate

C927

carbon monoxide

C3421

formate

C1020

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C1184

5-phospho-β-D-ribosylamine

C11606

thiamine phosphate

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C11774

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

C2191

carbamoyl phosphate

C11737

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

C12848

N5-carboxyaminoimidazole ribonucleotide

C3656

D-gluconate 6-phosphate

C12394

6-phospho D-glucono-1,5-lactone

C1171

2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine

C1182

N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide

C1431

3-dehydroshikimate

C11653

shikimate

C1186

5-oxo-L-proline

C11688

S-adenosyl 3-(methylsulfanyl)propylamine

C12056

L-arginino-succinate

C932

canavaninosuccinate

C6614

O-ureido-L-homoserine

C12364

isopentenyl diphosphate

C12169

hop-22(29)-ene

C4201

squalene

C12369

3-dehydroquinate

C11802

4'-phosphopantetheine

C11710

(R)-4'-phosphopantothenoyl-L-cysteine

C11930

N-acetylglutamyl-phosphate

C11826

oxalosuccinate

C12139

preuroporphyrinogen

C933

L-canavanine

C2580

methylsalicylate

C15056

salicyl alcohol

C1391

3-mercaptopyruvate

C12630

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

C1283

4-maleyl-acetoacetate

C12171

homogentisate

C3269

(S)-4-hydroxy-2-oxopentanoate

C3279

2-oxopent-4-enoate

C352

2-iminoacetate

C1108

acetyl phosphate

C11604

thiamine diphosphate

C3850

5-amino-6-(D-ribitylamino)uracil

C12326

1-deoxy-L-glycero-tetrulose 4-phosphate

C9422

nicotinate adenine dinucleotide

C11794

3'-phosphoadenylyl-sulfate

C1196

S-methyl-5'-thioadenosine

C1130

8-amino-7-oxononanoate

C13950

pimeloyl-CoA

C4674

glutathione disulfide

C14003

N-acetyl-L-glutamate 5-semialdehyde

C996

adenosine 5'-phosphosulfate

C11539

xanthine

C14215

3-phosphonopyruvate

C11715

quinolinate

C11857

β-nicotinate D-ribonucleotide

C571

4-hydroxy-2-nonenal

C12492

1,6-anhydro-N-acetyl-β-muramate

C7865

urea

C4620

S-formylglutathione

C12048

γ-L-glutamyl 5-phosphate

C12074

3-deoxy-D-manno-octulosonate 8-phosphate

C12176

histidinol

C12178

histidinal

C11869

N2-succinylglutamate

C13638

N2-succinyl-L-glutamate 5-semialdehyde

C11868

N2-succinyl-L-ornithine

C14075

N2-succinyl-L-arginine

C11874

N-succinyl-2-amino-6-ketopimelate

C11873

N-succinyl-L,L-2,6-diaminopimelate

C949

lipid X

C12286

ectoine

C11928

(2S)-4-acetamido-2-aminobutanoate

C12202

GMP-N-ε-(N-α-acetyl lysine methyl ester) 5'-phosphoramidate

C188

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

C194

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

C14924

carboxyphosphate

C13850

hydrogenobyrinate a,c-diamide

C13851

hydrogenobyrinate

C1407

3-hydroxypropanoate

C1538

2-C-methyl-D-erythritol 4-phosphate

C12368

(S)-2,3,4,5-tetrahydrodipicolinate

C13417

2-isopropylmaleate

C13793

(2R,3S)-3-methylmalate

C1491

citraconate

C1024

aminoacetone

C12213

2-aminomalonate semialdehyde

C15013

2-aminoacetaldehyde

C13635

β-D-ribosylnicotinate

C1485

2-oxopropyl-CoM

C10401

propene

C3343

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

C12324

autoinducer 2

C12029

S-ribosyl-L-homocysteine

C1268

(R)-4'-phosphopantothenate

C1550

2-amino-3-carboxymuconate-6-semialdehyde

C12494

N-acetyl-D-muramate 6-phosphate

C1305

4-fumaryl-acetoacetate

C12628

2-oxepin-2(3H)-ylideneacetyl-CoA

C12626

3-oxo-5,6-didehydrosuberyl-CoA

C12415

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

C13648

N-ethylammelide

C1271

4-oxoglutaramate

C585

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C9431

1,2-dihydro-β-NADP

C583

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C12274

enol-phenylpyruvate

C1010

ammonia

C582

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C435

bisorganyltrisulfane

C584

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C11520

hypoglycin B

C3526

L-kynurenine

C5032

carbamate

C3536

L-α-amino-ε-keto-pimelate

C12303

L-citrulline

C5612

L-cysteine

C5583

L-methionine

C5575

L-tryptophan

C5607

L-glutamate

C5588

L-leucine

C5603

L-isoleucine

C5571

L-valine

C5609

L-glutamine

C5642

L-arginine

C5573

L-tyrosine

C5597

L-alanine

C2469

L-phenylalanine

C5596

L-aspartate

C5579

L-serine

C5577

L-threonine

C5581

L-proline

C12067

glycine

C5584

L-lysine

C5605

L-histidine

C12203

S-adenosyl-L-homocysteine

C15292

S-adenosyl-L-methionine

C12247

L-homocysteine

C12231

L-ornithine

C12293

3-sulfino-L-alanine

C12239

L-aspartate 4-semialdehyde

C12261

hypoglycin A

C12245

L-homoserine

C12237

L-canaline

C12233

L-glutamate-5-semialdehyde

C12229

O-phospho-L-homoserine

C12227

O-succinyl-L-homoserine

C2488

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

C9505

L-allo-threonine

C5585

meso-diaminopimelate

C12073

L-aspartyl-4-phosphate

C12201

L-2-amino-3-oxobutanoate

C11955

O-acetyl-L-homoserine

C11975

N-α-acetyl lysine methyl ester

C10823

3-hydroxy-L-kynurenine

C10821

trans-4-hydroxy-L-proline

C5478

N-formyl-L-glutamate

C5476

formyl-L-isoglutamine

C15000

N-acetyl-L-ornithine

C14988

N-acetyl-L-citrulline

C5466

N-formimino-L-glutamate

C14976

N-acetyl-L-methionine

C14973

N-acetyl-L-glutamate

C13322

N-carbamoyl-L-aspartate

C3402

3-phospho-L-serine

C5580

L,L-diaminopimelate

C5618

L-2,4-diaminobutanoate

C5601

L-isoglutamine

C8799

D-alanine

C8797

D-glutamate

C11441

β-alanine

C11433

(S)-3-amino-2-methylpropanoate

C11429

salicylate

C11409

2,3-dihydroxybenzoate

C8974

4-aminobenzoate

C11481

orotate

C11517

acetate

C11482

(R)-pantoate

C11510

5-chloro-5-deoxy-D-ribonate

C4985

(S)-1-pyrroline-5-carboxylate

C2774

pristanate

C3207

7-hydroxylaurate

C3415

laurate

C3409

octanoate

C3412

decanoate

C3387

stearate

C3383

palmitate

C550

18-hydroxystearate

C553

16-hydroxypalmitate

C538

18-hydroxyoleate

C13260

phytenate

C13210

oleate

C13266

(15Z)-tetracosenoate

C6379

linoleate

C10590

α-linolenate

C13463

(2R,3S)-2-methylisocitrate

C6185

(R)-lactate

C11476

(R)-glycerate

C11212

(R)-3-hydroxybutanoate

C3301

2-oxoglutarate

C3308

pyruvate

C3257

2-oxobutanoate

C3337

5-chloro-4-hydroxy-2-oxopentanoate

C3351

glyoxylate

C3345

3-phenyl-2-oxopropanoate

C3315

3-(4-hydroxyphenyl)pyruvate

C8534

cis-aconitate

C8542

(2S,3S)-2-methylcitrate

C8531

D-threo-isocitrate

C8950

chorismate

C8923

α,ω-9Z-octadecenedioate

C6442

succinate

C6443

fumarate

C2802

(S)-malate

C10996

nicotinamide

C8039

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C8014

phosphoribulosylformimino-AICAR-phosphate

C8025

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

C10223

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IVA

C10226

α-Kdo-(2→6)-lipid IVA

C4819

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

C4821

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

C3727

all-trans-retinyl palmitate

C10966

all-trans-retinol

C9077

(2E,6E)-farnesyl diphosphate

C9304

trans,octacis-decaprenyl phosphate

C8321

geranyl diphosphate

C5781

3-[(8Z,11E,13Z)-pentadeca-8,11,13-trien-1-yl] )catechol

C5778

dimeric urushiol peroxide

C2727

enterobactin

C5841

pyochelin

C4549

3-heptaprenyl-4-hydroxybenzoate

C4545

3-nonaprenyl-4-hydroxybenzoate

C4553

3-octaprenyl-4-hydroxybenzoate

C4550

3-decaprenyl-4-hydroxybenzoate

C7060

3-hexaprenyl-4-hydroxybenzoate

C8322

di-trans,octa-cis-undecaprenyl phosphate

C1813

di-trans,octa-cis-undecaprenyl diphosphate

C5382

all-trans-heptaprenyl diphosphate

C15301

all-trans-nonaprenyl diphosphate

C5383

all-trans-octaprenyl diphosphate

C5364

all-trans-decaprenyl diphosphate

C5368

all-trans-hexaprenyl diphosphate

C6241

1-oleoyl-sn-glycerol 3-phosphate

C10024

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

C10025

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

C5435

trehalose-cis-keto-mono-mycolate

C5425

6-O-cis-keto-mycolyl-trehalose 6-phosphate

C5434

α, α'-trehalose 6-α-mycolate

C5422

6-O-α-mycolyl-trehalose 6-phosphate

C5430

trehalose-trans-keto-mono-mycolate

C5437

6-O-trans-keto-mycolyl-trehalose 6-phosphate

C5429

trehalose-cis-methoxy-mono-mycolate

C5436

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

C5439

trehalose-trans-methoxy-mono-mycolate

C5431

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

C4086

1-(β-D ribofuranosyl)nicotinamide

C11619

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

C2151

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

C10263

ADP-α-D-glucose

C1009

GDP-α-D-mannose

C1015

GDP-α-D-glucose

C983

GDP-α-D-mannuronate

C1043

GDP-4-dehydro-α-D-rhamnose

C993

GDP-4-dehydro-6-deoxy-β-L-galactose

C7189

GDP-β-L-fucose

C10343

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C8423

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C8428

CDP-ascarylose

C8432

CDP-3,6-dideoxy-D-glycero-4-hexulose

C1896

dTDP-4-dehydro-β-L-rhamnose

C1930

dTDP-β-L-rhamnose

C1939

dTDP-α-D-glucose

C7780

UDP-α-D-glucose

C5849

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

C7822

UDP-N-acetyl-α-D-muramate

C7804

UDP-α-D-galactofuranose

C8666

UDP-α-D-galactose

C7734

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

C7808

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

C7824

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

C7742

UDP-N-acetyl-α-D-muramoyl-L-alanine

C7776

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

C7814

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

C7722

UDP-α-D-glucuronate

C7782

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

C7444

UDP-N-acetyl-α-D-glucosamine

C5150

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

C5090

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C5094

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C5848

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C8305

CMP-3-deoxy-β-D-manno-octulosonate

C10338

5-phospho-α-D-ribose 1-diphosphate

C15289

D-sedoheptulose 7-phosphate

C10340

D-erythrose 4-phosphate

C10350

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

C10356

4-phospho-D-erythronate

C10342

D-sedoheptulose 1,7-bisphosphate

C8813

α-D-mannose 1-phosphate

C8811

α-D-glucopyranose 1-phosphate

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C2082

β-D-fructofuranose 1-phosphate

C2129

β-D-glucopyranose 1-phosphate

C2989

β-D-fructofuranose 6-phosphate

C10326

β-D-fructose 1,6-bisphosphate

C15303

D-fructose 6-phosphate

C2125

α-D-glucose 6-phosphate

C2057

α-D-ribose-1-phosphate

C8708

1-deoxy-D-xylulose 5-phosphate

C8704

D-xylulose 5-phosphate

C8700

aldehydo-D-arabinose 5-phosphate

C8699

D-arabinofuranose 5-phosphate

C10604

D-ribulose 5-phosphate

C5615

D-glyceraldehyde 3-phosphate

C6583

α,α-trehalose 6-phosphate

C3137

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C3138

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

C973

D-ribulose-1,5-bisphosphate

C10372

a peptidoglycan dimer (S. aureus)

C10379

a peptidoglycan dimer (E. faeciums)

C10362

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

C5529

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

C3120

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C361

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

C13230

a peptidoglycan dimer (meso-diaminopimelate containing)

C13222

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

C13226

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

C14591

a peptidoglycan with D,D cross-link (S. aureus)

C14587

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

C9494

D-glyceraldehyde

C2065

aldehydo-D-ribose

C2062

β-D-ribofuranose

C2061

α-D-ribofuranose

C15288

N-acetylmuramate

C9477

N-acetyl-α-D-muramoyl-L-alanine(1-)

C5286

N-acetyl-β-D-glucosamine

C3731

glycerol

C6823

α,α-trehalose

C10689

maltotetraose

C10691

maltohexaose

C10692

maltoheptaose

C10688

maltotriose

C10690

maltopentaose

C2761

8'-(3,4-dihydroxy-5-alkenyl)phenyl-3-[9'E,11'E,13'Z-pentadecatrienyl]catechol

C2768

catechol

C10527

myo-inositol

C13573

1D-myo-inositol 3-monophosphate

C13576

1D-myo-inositol 1-monophosphate

C3450

ethanol

C3448

methanol

C6090

methylglyoxal

C3500

acetaldehyde

C3483

formaldehyde

C10048

caldariellaquinone

C2040

diacetyl

C7041

toluene

C7033

6-hydroxy-2-cyclohexen-one-carboxylate

C6908

salicyl-6-hydroxy-2-cyclohexene-on-oyl

C6934

4-hydroxybenzoate

C3093

urate

C2883

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

C2879

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

C9501

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

C9503

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

C1869

caldariellaquinol

C1867

3-demethylubiquinol-8

C5543

ubiquinol-8

C12836

phenol

C6043

4-methylphenol

C8413

indole

C7694

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

C9455

guanine

C9454

adenine

C7809

AMP

C7741

IMP

C7827

GMP

C7811

XMP

C7844

ATP

C7745

GTP

C7759

ITP

C7757

ADP

C7795

GDP

C7817

IDP

C7807

dGDP

C7747

dIDP

C7823

dADP

C7751

dGTP

C7749

dITP

C7783

dATP

C7785

hypoxanthine

C15088

adenosine

C15091

inosine

C15085

guanosine

C15094

xanthosine

C12742

7,8-dihydrolumazine

C14603

tetrahydromethanopterin

C5578

6-carboxy-5,6,7,8-tetrahydropterin

C5590

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

C5594

5,6,7,8-tetrahydromonapterin

C12680

(7,8-dihydropterin-6-yl)methyl diphosphate

C12676

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

C12726

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

C12728

6-(hydroxymethyl)-7,8-dihydropterin

C12686

7,8-dihydromonapterin triphosphate

C12730

7,8-dihydroneopterin 3'-triphosphate

C12714

7,8-dihydropterin

C12696

7,8-dihydromonapterin

C12702

cyclic pyranopterin phosphate

C12718

molybdopterin

C12668

molybdopterin adenine dinucleotide

C10609

7,8-dihydropteroate

C14624

5,10-methylene-tetrahydromethanopterin

C10597

7,8-dihydrofolate monoglutamate

C7134

tetrahydropteroyl tri-L-glutamate

C8566

5-methyltetrahydropteroyl tri-L-glutamate

C6003

guanylyl molybdenum cofactor

C6007

MoO2-molybdopterin cofactor

C10050

FADH2

C15044

reduced riboflavin

C10049

FMNH2

C10988

riboflavin

C10053

FAD

C10052

FMN

C1659

6,7-dimethyl-8-(1-D-ribityl)lumazine

C8739

uracil

C10601

thymine

C9540

preQ1

C7649

isoguanine

C8761

CTP

C8760

UTP

C8724

dUTP

C8752

dUDP

C8732

CDP

C8772

dCTP

C8733

dCDP

C8714

UDP

C8764

dTTP

C8720

dTDP

C8744

dTMP

C8755

dCMP

C8770

dUMP

C4012

5,6-dihydrouracil

C7801

5,6-dihydrothymine

C6460

cytidine-3'-monophosphate

C8750

cytidine 2',3'-cyclic monophosphate

C6462

uridine 3'-monophosphate

C8747

uridine 2'3'-cyclic monophosphate

C2241

UMP

C2245

CMP

C2702

cytidine

C2706

uridine

C5221

adenosylcobalamin

C9861

cobyrinate

C10614

coenzyme A

C12629

coenzyme M

C5485

1-(5-phospho-β-D-ribosyl)-ATP

C5552

5'-deoxyadenosine

C10288

adenylo-succinate

C5489

1-(5-phospho-β-D-ribosyl)-AMP

C7643

cyclic-GMP

C7652

cyclic-AMP

C10266

ppGpp

C10267

pppGpp

C7653

guanosine 3'-monophosphate

C7645

guanosine 2',3'-cyclic monophosphate

C7641

adenosine 3'-monophosphate

C7841

adenosine 2',3'-cyclic monophosphate

C7837

8-oxo-dGMP

C7647

8-oxo-dGTP

C7646

8-oxo-GMP

C7655

8-oxo-GTP

C4243

β-nicotinamide D-ribonucleotide

C10280

5-hydroxy-CMP

C10290

5-hydroxy-CTP

C10284

2-hydroxy-dATP

C1817

cyclic di-3',5'-guanylate

C4020

NAD+

C4018

NADP+

C14500

NADH

C14497

NADPH

C1804

P1,P4-bis(5'-adenosyl) tetraphosphate

C11516

glycine betaine

C5392

(S)-NADHX

C5394

(R)-NADHX

C10982

nicotinate

C10994

thiamine

C4214

pyridoxine 5'-phosphate

C4210

pyridoxal 5'-phosphate

C4188

pyridoxamine 5'-phosphate

C9874

cob(I)alamin

C9096

(indol-3-yl)acetate

C9098

methyl (indol-3-yl)acetate

C11480

phenylacetate

C4560

3,24-dioxocholest-4-en-26-oyl-CoA

C4513

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

C4572

(25S)-3-oxocholest-4-en-26-oyl-CoA

C4520

(25S)-3-oxocholest-4-en-26-oate

C5298

acetyl-CoA

C4911

methylacrylyl-CoA

C5274

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

C5272

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

C5285

(E)-2-methylcrotonoyl-CoA

C5310

3-hydroxyisovaleryl-CoA

C5279

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

C5278

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

C5315

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

C5308

(3S)-hydroxyadipyl-CoA

C5266

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

C5265

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

C5276

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

C5263

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

C5270

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

C5056

linoleoyl-CoA

C4915

α-linolenoyl-CoA

C4913

malonyl-CoA

C4901

succinyl-CoA

C4922

isobutanoyl-CoA

C4937

3'-dephospho-CoA

C5314

2-methylacetoacetyl-CoA

C5014

phenylacetyl-CoA

C5311

(S)-3-hydroxy-3-methylglutaryl-CoA

C4899

3-methylglutaconyl-CoA

C5306

3-methylcrotonyl-CoA

C4920

isovaleryl-CoA

C5313

2-methylbutanoyl-CoA

C11197

(S)-3-hydroxy-isobutanoyl-CoA

C3150

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

C5635

oleoyl-CoA

C10758

3-oxoadipyl-CoA

C10759

(9Z,12Z,15Z,18Z,21Z)-3-oxotetracosapentaenoyl-CoA

C10762

(7Z,10Z,13Z,16Z)-3-oxodocosatetraenoyl-CoA

C10757

(9Z,12Z,15Z,18Z)-3-oxotetracosatetraenoyl-CoA

C6075

3-oxooctadecanoyl-CoA

C5843

(6Z,9Z,12Z,15Z,18Z,21Z)-3-oxotetracosahexaenoyl-CoA

C5845

(6Z,9Z,12Z,15Z,18Z)-3-oxotetracosapentaenoyl-CoA

C2008

acetoacetyl-CoA

C2009

3-oxopentanoyl-CoA

C6198

3-oxodecanoyl-CoA

C6200

3-oxohexanoyl-CoA

C6197

3-oxooctanoyl-CoA

C6566

16-hydroxypalmitoyl-CoA

C6562

hexadecanedioyl-CoA

C6568

(3R,7Z,10Z,13Z,16Z)-3-hydroxydocosatetraenoyl-CoA

C5885

stearoyl-CoA

C5892

palmitoyl-CoA

C480

18-hydroxystearoyl-CoA

C491

18-hydroxyoleoyl-CoA

C2873

pristanoyl-CoA

C11187

7-hydroxylauroyl-CoA

C14674

lauroyl-CoA

C14677

octanoyl-CoA

C14697

decanoyl-CoA

C1177

propanoyl-CoA

C11399

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

C7168

(Z)-15-tetracosenoyl-CoA

C7165

(3R,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosapentaenoyl-CoA

C7164

(3R,9Z,12Z,15Z,18Z)-3-hydroxytetracosatetraenoyl-CoA

C7353

(S)-3-hydroxydecanoyl-CoA

C15307

(S)-3-hydroxyoctanoyl-CoA

C5922

(S)-3-hydroxyhexanoyl-CoA

C10775

(S)-3-hydroxybutanoyl-CoA

C7152

(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA

C7149

(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA

C10774

(3R)-3-hydroxybutanoyl-CoA

C5879

(3R)-3-hydroxyoctadecanoyl-CoA

C7356

(3R)-3-hydroxypentanoyl-CoA

C7343

(S)-malyl-CoA

C11400

phytenoyl-CoA

C4299

(2E)-oct-2-enoyl-CoA

C4309

(2E)-dec-2-enoyl-CoA

C11402

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

C1337

crotonyl-CoA

C4606

S-(hydroxymethyl)glutathione

C4678

glutathione

C4580

(R)-S-lactoylglutathione

C12637

3-sulfopyruvate

C12587

L-cysteate

C5759

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

C5750

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

C5753

4-methyl-5-(2-phosphooxyethyl)thiazole

C5744

5-(2-hydroxyethyl)-4-methylthiazole

C3978

thiocyanate

C3998

methanethiol

C4644

S-sulfanylglutathione

C10301

agmatine

C3548

putrescine

C3574

spermidine

C3592

N-acetylputrescine

C6526

(2Z)-2-aminobut-2-enoate

C6524

2-aminoprop-2-enoate

C6708

2-iminopropanoate

C8958

superoxide

C8962

nitric oxide

C8965

hydroxyl radical

C7014

sulfate

C7036

hydrogencarbonate

C7030

nitrate

C7016

sulfite

C7024

thiosulfate

C7025

OH-

C7057

molybdate

C7034

hydrogensulfite

C7006

chloride

C6097

phosphate

C6093

diphosphate

C6094

triphosphate

C7864

Fe3+

C11001

Mo2+

C11023

Fe2+

C11011

Cu2+

C4328

ammonium

C4318

K+

C4320

H+

C11281

2-chloroacetate

C4658

2,4-dinitrophenyl-S-glutathione

C13114

1-chloro-2,4-dinitrobenzene

C13354

preQ0

C13422

hydrogen cyanide

C6274

(S)-1,2-epoxypropane

C6275

(R)-1,2-epoxypropane

C6277

2-methoxy-6-(all-trans-octaprenyl)phenol

C6287

2-octaprenylphenol

C6290

(S)-3-hydroxy-isobutanoate

C6293

3-(all-trans-octaprenyl)benzene-1,2-diol

C6741

(S)-methylmalonate-semialdehyde

C6763

(R)-methylmalonate-semialdehyde

C6755

(R)-citramalate

C6644

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

C2150

(2R)-2,3-dihydroxy-3-methylbutanoate

C6437

3-phospho-D-glyceroyl-phosphate

C6438

3-phospho-D-glycerate

C6425

2-phospho-D-glycerate

C8419

sn-glycerol 3-phosphate

C6599

2-iminobutanoate

C6596

2-iminosuccinate

C7121

oxygen

C7118

hydrogen sulfide

C7658

uroporphyrinogen-III

C7672

coproporphyrinogen I

C7662

uroporphyrinogen-I

C7676

protoporphyrin IX

C7666

protoporphyrinogen IX

C6624

protoheme

C9807

adenosylcobinamide

C9869

cob(I)inamide

C9853

adenosyl-cob(III)yrinate a,c-diamide

C9823

cob(I)yrinate a,c-diamide

C9828

cob(II)yrinate a,c-diamide

C9811

cob(II)yrinate c-monoamide

C3865

phosphonoacetaldehyde

C12116

(2-aminoethyl)phosphonate

C803

ethylphosphate

C10799

DNA with lesion

C2929

(2S)-2-hydroxypropyl-CoM

C2925

2-(R)-hydroxypropyl-CoM

C4632

(glutathion-S-yl)-4-hydroxy-2-nonenal

C1328

L-cysteinylglycine

C8518

γ-L-glutamyl-L-cysteine

C1434

D-alanyl-D-alanine

C2576

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

C2562

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

C6530

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine