an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

tartronate semialdehyde

orotidine 5'-phosphate

3-phosphooxypyruvate

2-maleylacetate

4-hydroxy-2-nonenal

4-phosphooxy-L-threonine

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

histidinal

histidinol

D-erythro-imidazole-glycerol-phosphate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

4-methyl-3-oxoadipate

3-methylmuconolactone

4-methyl-3-oxoadipate-enol-lactone

muconolactone

(4,5-dihydro-5-oxofuran-2-yl)-acetate

α-ribazole

β-D-ribosylnicotinate

5-amino-6-(D-ribitylamino)uracil

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

glycolate

carbonic acid

selenophosphate

2-succinylbenzoate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

DNA without lesion

isochorismate

3-hydroxyanthranilate

N-Formyl-L-kynurenine

(S)-5-hydroxyisourate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

hydroxypyruvate

coproporphyrinogen III

3-oxopropanoate

(S)-4-amino-5-oxopentanoate

(S)-dihydroorotate

3-deoxy-D-manno-octulosonate 8-phosphate

ethanolamine

γ-L-glutamyl 5-phosphate

5-dehydro-D-gluconate

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

β-nicotinate D-ribonucleotide

quinolinate

phenylglyoxylate

2-(4-hydroxyphenyl)-2-oxoacetate

4-hydroxybenzaldehyde

shikimate 3-phosphate

O-ureido-L-homoserine

L-selenocystathionine

shikimate

3-deoxy-D-arabino-heptulosonate 7-phosphate

2-C-methyl-D-erythritol 4-phosphate

carbamoyl phosphate

carboxyphosphate

α-D-glucosamine 1-phosphate

nicotinate adenine dinucleotide

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

5-dehydro-4-deoxy-D-glucarate

2,5-dioxopentanoate

N-(5-phosphoribosyl)-anthranilate

anthranilate

oxalosuccinate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

L-arginino-succinate

canavaninosuccinate

L-canavanine

isopentenyl diphosphate

prenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

(R)-pantothenate

(R)-4'-phosphopantothenate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

glycerone phosphate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

propionamide

(indol-3-yl)acetamide

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

S-adenosyl 3-(methylsulfanyl)propylamine

S-methyl-5'-thioadenosine

1-deoxy-L-glycero-tetrulose 4-phosphate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

hydrogenobyrinate

hydrogen peroxide

2-dehydropantoate

5-enolpyruvoyl-shikimate 3-phosphate

(E)-3-(methoxycarbonyl)pent-2-enedioate

S-formylglutathione

dihydroxyacetone

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

4-imidazolone-5-propanoate

urocanate

succinate semialdehyde

4-methyl-2-oxopentanoate

5-aminolevulinate

porphobilinogen

imidazole acetol-phosphate

L-histidinol phosphate

acetoacetate

2,3-didehydroadipyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

oxaloacetate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

citrate

3-dehydroquinate

3-dehydroshikimate

CO₂

H₂O

phosphoenolpyruvate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(3E)-2-oxopent-3-enoate

4-oxalocrotonate

(2E)-2-hydroxypenta-2,4-dienoate

ammonia

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1-piperideine 6-carboxylate

4-oxoglutaramate

selenodiglutathione

glutathioselenol

(S)-ureidoglycolate

1,4-dihydroxy-2-naphthoyl-CoA

1,4-dihydroxy-2-naphthoate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

cis,cis-muconate

hydrogen selenide

5-amino-6-(5-phospho-D-ribitylamino)uracil

4-carboxybenzaldehyde

4-carboxybenzyl alcohol

autoinducer 2

4-maleyl-acetoacetate

vanillin

8-amino-7-oxononanoate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

4-aminobutanoate

6-phospho D-glucono-1,5-lactone

dialurate

(R)-1-amino-2-propanol O-2-phosphate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

5-oxo-L-proline

urea-1-carboxylate

(lipoyl)adenylate

cyclohexanone

ε-caprolactone

lipid IV_A

3-deoxy-α-D-manno-2-octulosonate

nicotine-1'-N-oxide

N,N-dimethylaniline

N,N-dimethylaniline-N-oxide

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

2-pyrone-4,6-dicarboxylate

N-succinyl-2-amino-6-ketopimelate

N-succinyl-L,L-2,6-diaminopimelate

3-hydroxypropanoate

sinapate

sinapoyl-CoA

5-hydroxyferulate

5-hydroxy-feruloyl-CoA

2-dehydro-3-deoxy-D-gluconate

lipid A disaccharide (E. coli)

lipid X

L-gulono-1,4-lactone

creatinine

urea

thiamine diphosphate

2-phosphoglycolate

prephenate

(S)-2-amino-6-oxohexanoate

acetyl phosphate

4-amino-4-deoxychorismate

D-gluconate 6-phosphate

2,4'-dihydroxyacetophenone

hydrogenobyrinate a,c-diamide

salicyl alcohol

methylsalicylate

pimelate

homogentisate

(2-hydroxyphenyl)acetate

coenzyme F₃₉₀-A

7-carboxy-7-deazaguanine

(S)-2,3,4,5-tetrahydrodipicolinate

N⁵-carboxyaminoimidazole ribonucleotide

S-ribosyl-L-homocysteine

pimeloyl-CoA

6-carboxyhex-2-enoyl-CoA

2-protocatechuoylphloroglucinolcarboxylate

carbon monoxide

N²-succinylglutamate

terephthalate

(1R,6S)-dihydroxycyclohexa-2,4-diene-1,4-dicarboxylate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

methylamine

N-ethylglycine

ethylamine

2-iminoacetate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

O-acetyl-L-serine

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

4-fumaryl-acetoacetate

2-oxoadipate

2-aminoacetaldehyde

propanoyl phosphate

4'-phosphopantetheine

3-mercaptopyruvate

preuroporphyrinogen

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

(R)-4-phosphopantoate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

2-methyl-1,4-benzoquinone

methyl-1,4-benzoquinol

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribosylamino)uracil

citraconate

(2R,3S)-3-methylmalate

2-oxopent-4-enoate

(S)-4-hydroxy-2-oxopentanoate

(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate

(2E,4Z)-2-hydroxy-6-oxohepta-2,4-dienoate

(2E,4Z)-2-hydroxymuconate

(2Z,4E)-2-hydroxy-5-methyl-6-oxohexa-2,4-dienoate

2-hydroxy-6-oxohepta-2,4-dienoate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

glutathione disulfide

5-carboxymethyl-2-hydroxymuconate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(4Z)-2-oxohept-4-enedioate

(24E)-3α,7α-dihydroxy-5β-cholest-24-enoyl-CoA

(24R,25R)-3α,7α,24-trihydroxy-5β-cholestanoyl CoA

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

L-homocysteine

4-methylphenol

phenylacetate

ethylphosphate

carboxyphosphinopyruvate

3-(hydroxyphosphinoyl)pyruvate

1-carboxyvinyl carboxyphosphonate

hydrogen cyanide

adenosylcobalamin

cob(I)alamin

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

adenosylcobyrate

adenosyl-cobinamide phosphate

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

Mg-protoporphyrin

cobalt-precorrin-6B

cobalt-precorrin-6A

protoheme

protoporphyrinogen IX

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrin IX

uroporphyrinogen-III

oxygen

hydrogen sulfide

2-iminopropanoate

2-iminosuccinate

2-iminobutanoate

2-chloroacetate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(S)-ureidoglycine

(R)-citramalate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

3-(all-trans-octaprenyl)benzene-1,2-diol

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

acrylonitrile

preQ₀

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

Fe³⁺

K⁺

H⁺

ammonium

Mo²⁺

Mg²⁺

Fe²⁺

selenide

superoxide

sulfite

selenate

hydrogencarbonate

molybdate

sulfate

hydrogensulfite

selenite

OH^-

tetrathionate

thiosulfate

phosphate

triphosphate

diphosphate

chloride

hydroxyl radical

(2E,6E)-farnesyl diphosphate

pristanate

sn-glycero-3-phosphoethanolamine

glycerophosphoserine

glycerophosphoglycerol

1-oleoyl-2-palmitoyl-phosphatidylglycerol

ferrichrome

glycine betaine

betaine aldehyde

choline

choline sulfate

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

N¹-acetylspermidine

N-acetylputrescine

N¹-acetylspermine

putrescine

spermidine

cadaverine

spermine

S-(hydroxymethyl)glutathione

methanethiol

glutathione

thiocyanate

S-sulfanylglutathione

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

L-cysteate

3-sulfopyruvate

taurine

3-(N-morpholino)propanesulfonate

1-butanesulfonate

isethionate

dodecyl sulfate

3-sulfocatechol

(R)-S-lactoylglutathione

3-sulfino-L-alanine

trans,octacis-decaprenylphospho-β-D-ribofuranose 5-phosphate

all-trans-retinyl palmitate

cis-dienelactone

trans-dienelactone

D-glucono-1,5-lactone

(24R,25R)-3α,7α,12α,24-tetrahydroxy-5β-cholestanoyl CoA

(24E)-3α,7α,12α-trihydroxy-5β-cholest-24-enoyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

3'-dephospho-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

4-hydroxybenzoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-methylglutaconyl-CoA

isovaleryl-CoA

3-methylcrotonyl-CoA

succinyl-CoA

malonyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

(3S)-hydroxyadipyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-hydroxyisovaleryl-CoA

(E)-2-methylcrotonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

methylacrylyl-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

2-methylbutanoyl-CoA

isobutanoyl-CoA

acryloyl-CoA

3-hydroxypropanoyl-CoA

trans-caffeoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3E)-undec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

(3S)-citryl-CoA

(R)-methylmalonyl-CoA

(S)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(3Z)-dodec-3-enoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxystearoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxyoleoyl-CoA

(3R,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosapentaenoyl-CoA

(3R,7Z,10Z,13Z,16Z)-3-hydroxydocosatetraenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxypentanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(3R,9Z,12Z,15Z,18Z)-3-hydroxytetracosatetraenoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(Z)-15-tetracosenoyl-CoA

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(9Z,12Z,15Z,18Z,21Z)-3-oxotetracosapentaenoyl-CoA

(9Z,12Z,15Z,18Z)-3-oxotetracosatetraenoyl-CoA

butanoyl-CoA

propanoyl-CoA

decanoyl-CoA

hexanoyl-CoA

octanoyl-CoA

lauroyl-CoA

stearoyl-CoA

palmitoyl-CoA

myristoyl-CoA

pristanoyl-CoA

(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA

(7Z,10Z,13Z,16Z)-3-oxodocosatetraenoyl-CoA

hexadecanedioyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxoadipyl-CoA

3-oxododecanoyl-CoA

3-oxooctanoyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

(6Z,9Z,12Z,15Z,18Z,21Z)-3-oxotetracosahexaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z)-3-oxotetracosapentaenoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

3-oxo-palmitoyl-CoA

3-oxooctadecanoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

ethene

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

glycocholate

cholate

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

riboflavin

nicotinate

all-trans-retinol

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

pyridoxamine

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxal

pyridoxine

menadione

FAD

FADH₂

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

caldariellaquinone

caldariellaquinol

ubiquinol-8

3-demethylubiquinol-8

8-oxo-dGTP

8-oxo-dGMP

2'-deoxyguanosine

hypoxanthine

XMP

5'-deoxyadenosine

GMP

IMP

adenylo-succinate

dADP

dATP

dIDP

dITP

dGDP

dGTP

GTP

GDP

ITP

IDP

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

ADP

ATP

AMP

isoguanine

8-oxo-GTP

8-oxo-GMP

pppGpp

ppGpp

xanthosine

guanosine

inosine

adenosine

uridine

cytidine

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CTP

dTTP

dCTP

dUTP

CTP

UTP

dCMP

dUMP

dTMP

CMP

UMP

dTDP

dCDP

dUDP

UDP

CDP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

preQ₁

uracil

adenine

CMP-3-deoxy-β-D-manno-octulosonate

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

coenzyme A

(R)-lipoate

oxidized coenzyme F₄₂₀-2

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

(6R)-L-erythro-5,6,7,8-tetrahydrobiopterin

(S)-1-pyrroline-5-carboxylate

precorrin-8x

precorrin-2

precorrin-3A

precorrin-3B

precorrin-4

precorrin-6B

precorrin-7

precorrin-5

precorrin-6A

precorrin-1

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin

7,8-dihydromonapterin

7,8-dihydroneopterin 3'-triphosphate

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

7,8-dihydropteroate

6-carboxy-5,6,7,8-tetrahydropterin

(6R)-4a-hydroxy-tetrahydrobiopterin

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

orotate

quercetin

4-hydroxybenzoate

toluene

3-hexaprenyl-4-hydroxybenzoate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

salicylaldehyde

benzaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

phenol

catechol

protocatechuate

2,3-dihydroxybenzoate

8'-(3,4-dihydroxy-5-alkenyl)phenyl-3-[9'E,11'E,13'Z-pentadecatrienyl]catechol

4-methylcatechol

3-methylcatechol

enterobactin

dimeric urushiol peroxide

3-[(8Z,11E,13Z)-pentadeca-8,11,13-trien-1-yl] )catechol

menadiol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

4-coumarate

trans-caffeate

vanillate

salicylate

4-aminobenzoate

benzoate

4-methylbenzoate

diacetyl

methylglyoxal

3-(N-morpholino)propanal

glycolaldehyde

acetaldehyde

butan-1-al

formaldehyde

D-glyceraldehyde

α-L-arabinopyranose

α-D-galactopyranose

β-D-galactopyranose

ethanol

methanol

1-dodecanol

glycerol

myo-inositol

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

α-Kdo-(2→6)-lipid IV_A

unsaturated gellan tetrasaccharide

β-D-Glcp-(1→4)-α-L-Rhap-(1→3)-D-Glcp

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

4-deoxy-L-threo-hex-4-enopyranuronate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-arabinofuranose 5-phosphate

D-ribulose 5-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

D-gluconate

L-idonate

L-gulonate

18-hydroxystearate

16-hydroxypalmitate

18-hydroxyoleate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-hexaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-heptaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-decaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

(S)-nicotine

6-aminopenicillanate

isopenicillin N

penicillin G

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine

allantoate

acetamide

(S)-(+)-allantoin

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

chorismate

(3E)-2-oxohex-3-enedioate

L-aspartate

fumarate

succinate

(S)-malate

α,ω-9Z-octadecenedioate

D-galactarate

trans-aconitate

(2S,3S)-2-methylcitrate

cis-aconitate

(1E)-4-oxobut-1-ene-1,2,4-tricarboxylate

2-hydroxy-4-oxobutane-1,2,4-tricarboxylate

(1E,3E)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate

3-carboxy-cis,cis-muconate

(2R,3S)-2-methylisocitrate

cis-2-methylaconitate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

D-threo-isocitrate

3-oxoadipate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

pyruvate

4-(methylsulfanyl)-2-oxobutanoate

glyoxylate

2-oxobutanoate

2-oxoglutarate

acetate

formate

propanoate

(R)-lactate

7-hydroxylaurate

laurate

octanoate

decanoate

4-hydroxybutanoate

(R)-3-hydroxybutanoate

(15Z)-tetracosenoate

linoleate

α-linolenate

stearate

palmitate

oleate

8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-enyl}cyclopentyl]octanoate

dinor-12-oxo-phytodienoate

phytenate

(R)-pantoate

L-kynurenine

carbamate

L-α-amino-ε-keto-pimelate

L-2-aminoadipate

L-serine

glycine

L-threonine

L-tyrosine

L-glutamine

L-cysteine

L-arginine

L-lysine

L-histidine

L-glutamate

L-phenylalanine

L-tryptophan

L-valine

L-isoleucine

L-leucine

L-proline

L-alanine

L-methionine

creatine

β-alanine

(S)-3-amino-2-methylpropanoate

D-glutamate

D-alanine

L-cystathionine

L-aspartyl-4-phosphate

L-ornithine

L-isoglutamine

L,L-diaminopimelate

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-formyl-L-glutamate

N-formimino-L-glutamate

N-acetyl-L-ornithine

seleno-L-homocysteine

L-selenomethionine

L-saccharopine

3-phospho-L-serine

sarcosine

N-acetyl-L-methionine

N-acetyl-L-glutamate

3-hydroxy-L-kynurenine

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L-citrulline

O-phospho-L-homoserine

L-homoserine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-glutamate-5-semialdehyde

hypoglycin A

O-succinyl-L-homoserine

L-canaline

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

hypoglycin B

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-cysteinylglycine

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine