an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

glutathione disulfide

pyruvic oxime

S-ribosyl-L-homocysteine

autoinducer 2

vanillin

4-imidazolone-5-propanoate

urocanate

hydrogen selenide

4-deoxy-4-formamido-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

maleamate

(2Z,4E)-2-aminomuconate

thiamine diphosphate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

preuroporphyrinogen

2-hydroxyformononetin

(3R)-sophorol

2'-hydroxypseudobaptigenin

hydroxypyruvate

formamide

4-methylbenzyl alcohol

3-methylbenzyl alcohol

3-methylbenzaldehyde

5-androstene-3,17-dione

5-α-androstan-3β,17β-diol

pregn-5-ene-3,20-dione

pregn-5-ene-3,20-dione-17-ol

porphobilinogen

2-protocatechuoylphloroglucinolcarboxylate

carbon monoxide

thiamine phosphate

tartronate semialdehyde

2-dehydro-3-deoxy-D-galactonate

3-hydroxyanthranilate

N-Formyl-L-kynurenine

5-dehydro-2-deoxy-D-gluconate

5-dehydro-2-deoxy-D-gluconate 6-phosphate

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

(lipoyl)adenylate

carbonic acid

3-hydroxypropanoate

2-aminoacetaldehyde

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

phosphocholine

6-hydroxynicotinate

2,5-dihydroxypyridine

N-formylmaleamate

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

4-amino-4-deoxy-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

quinolinate

(S)-mandelate

(R)-mandelate

O-acetyl-L-serine

2-dehydro-3-deoxy-D-galactonate 6-phosphate

2-dehydro-3-deoxy-D-gluconate

4-methyl-3-oxoadipate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

ammonia

hydroxylamine

(S)-4-hydroxy-2-oxopentanoate

2-oxopent-4-enoate

chloroacetaldehyde

creatinine

3-dehydroshikimate

(2-hydroxyphenyl)acetate

7-carboxy-7-deazaguanine

β-D-ribosylnicotinate

α-D-ribose-1-methylphosphonate 5-phosphate

5-phospho-α-D-ribose 1,2-cyclic phosphate

presqualene diphosphate

(+)-muconolactone

muconolactone

3-methylmuconolactone

4-methyl-3-oxoadipate-enol-lactone

cis,cis-muconate

(S)-5-hydroxyisourate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

xanthine

6-amino-2-oxohexanoate

2-pyrone-4,6-dicarboxylate

L-gulono-1,4-lactone

3-phosphooxypyruvate

pimeloyl-CoA

8-amino-7-oxononanoate

7,8-diaminopelargonate

dethiobiotin

methylsalicylate

salicyl alcohol

lipid X

N-succinyl-2-amino-6-ketopimelate

N-succinyl-L,L-2,6-diaminopimelate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

4-amino-4-deoxychorismate

squalene

hop-22(29)-ene

N⁵-carboxyaminoimidazole ribonucleotide

3'-phosphoadenylyl-sulfate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

2-amino-3-carboxymuconate-6-semialdehyde

(2Z,4E)-2-amino-6-oxohexa-2,4-dienoate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

(R)-pantothenate

5-oxo-L-proline

D-glycero-β-D-manno-heptose 1,7-bisphosphate

N-acetyl-D-muramate 6-phosphate

(S)-dihydroorotate

4'-phosphopantetheine

3-deoxy-D-manno-octulosonate 8-phosphate

3-phosphonopyruvate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(4Z)-2-oxohept-4-enedioate

(indol-3-yl)pyruvate

3-mercaptopyruvate

5-amino-6-(D-ribitylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribosylamino)uracil

6-phospho D-glucono-1,5-lactone

ethanolamine

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

4-hydroxy-2-nonenal

D-erythro-imidazole-glycerol-phosphate

2-iminoacetate

3-dehydroquinate

shikimate

urea-1-carboxylate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

(S)-2,3,4,5-tetrahydrodipicolinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

(R)-4-phosphopantoate

(R)-4'-phosphopantothenate

3-deoxy-α-D-manno-2-octulosonate

O-ureido-L-homoserine

2-phosphoglycolate

prephenate

ADP-L-glycero-β-D-manno-heptose

D-glycero-β-D-manno-heptose 1-phosphate

ADP-D-glycero-β-D-manno-heptose

shikimate 3-phosphate

glycolate

β-nicotinate D-ribonucleotide

S-adenosyl 3-(methylsulfanyl)propylamine

S-methyl-5'-thioadenosine

2-oxoadipate

propanoyl phosphate

DNA without lesion

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

3-amino-1-hydroxyacetone 1-phosphate

citraconate

(2R,3S)-3-methylmalate

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

UDP-4-deoxy-4-formamido-β-L-arabinopyranose

4-fumaryl-acetoacetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

2-maleylacetate

6-chlorohydroxyquinol

5-carboxymethyl-2-hydroxymuconate

N-(5-phosphoribosyl)-anthranilate

anthranilate

5-methylcytosine

S-formylglutathione

hydrogen peroxide

D-gluconate 6-phosphate

histidinal

histidinol

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

3-ureidopropanoate

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

2,3-didehydroadipyl-CoA

5-dehydro-D-gluconate

4-aminobutanoate

3-oxopropanoate

succinate semialdehyde

2,5-dioxopentanoate

5-dehydro-4-deoxy-D-glucarate

(S)-ureidoglycolate

urea

homogentisate

4-maleyl-acetoacetate

cyanate

2-C-methyl-D-erythritol 4-phosphate

(S)-3-methyl-2-oxopentanoate

L-selenocystathionine

canavaninosuccinate

L-canavanine

L-arginino-succinate

nicotinate adenine dinucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

N-acetylglutamyl-phosphate

phosphoenolpyruvate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

acetoacetate

coproporphyrinogen III

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

1-deoxy-L-glycero-tetrulose 4-phosphate

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

glycerone phosphate

orotidine 5'-phosphate

γ-L-glutamyl 5-phosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

3-methyl-2-oxobutanoate

2-dehydropantoate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

oxalosuccinate

lipid A disaccharide (E. coli)

lipid IV_A

N-acetyl-L-glutamate 5-semialdehyde

isopentenyl diphosphate

prenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

α-D-glucosamine 1-phosphate

carbamoyl phosphate

carboxyphosphate

acrylamide

acrylate

propionamide

4-guanidinobutyramide

4-guanidinobutanoate

(indol-3-yl)acetamide

5-enolpyruvoyl-shikimate 3-phosphate

imidazole acetol-phosphate

L-histidinol phosphate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

citrate

H₂O

oxaloacetate

CO₂

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

picolinate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(3E)-2-oxopent-3-enoate

1,2-dihydro-β-NADP

enol-phenylpyruvate

5-aminopentanoate

4-oxoglutaramate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1-piperideine-2-carboxylate

(2E)-2-hydroxypenta-2,4-dienoate

5-amino-6-(5-phospho-D-ribitylamino)uracil

selenodiglutathione

glutathioselenol

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

L-homocysteine

4-methylphenol

ethylphosphate

phosphonoacetaldehyde

(2-aminoethyl)phosphonate

hydrogen cyanide

adenosylcobalamin

cob(I)alamin

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cob(II)yrinate c-monoamide

cobyrinate

cob(II)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

protoheme

uroporphyrinogen-III

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrin IX

protoporphyrinogen IX

hydrogen sulfide

oxygen

2-iminosuccinate

2-iminopropanoate

2-iminobutanoate

2-chloroacetate

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(S)-ureidoglycine

(R)-citramalate

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

3-(all-trans-octaprenyl)benzene-1,2-diol

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

ethene

methane

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

2-chloromaleylacetate

3-chlorobenzyl alcohol

3-chlorobenzaldehyde

2,4,6-trichlorophenol

2-nitrobenzoate

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

FADH₂

FAD

FMNH₂

FMN

(S)-NADHX

(R)-NADHX

caldariellaquinol

ubiquinol-8

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-8

caldariellaquinone

NADPH

NADH

NADP⁺

NAD⁺

glycine betaine

superoxide

hydroxyl radical

(2E,6E)-farnesyl diphosphate

pristanate

Fe³⁺

K⁺

H⁺

ammonium

Fe²⁺

thiosulfate

selenate

nitrite

sulfite

hydrogencarbonate

sulfate

hydrogensulfite

OH^-

selenite

phosphate

triphosphate

diphosphate

chloride

S-(hydroxymethyl)glutathione

thiocyanate

methanethiol

glutathione

S-sulfanylglutathione

4-methyl-5-(2-phosphooxyethyl)thiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

taurine

L-cysteate

3-sulfopyruvate

1-butanesulfonate

3-(N-morpholino)propanesulfonate

isethionate

(R)-S-lactoylglutathione

3-sulfino-L-alanine

betaine aldehyde

choline

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

cadaverine

putrescine

spermidine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-cysteinylglycine

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

2-hydroxylaminobenzoate

urate

benzyl alcohol

salicylaldehyde

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

3-hexaprenyl-4-hydroxybenzoate

4-hydroxybenzoate

4-methylbenzaldehyde

benzaldehyde

menadiol

2,6-dichlorohydroquinone

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

ferulate

quercetin

catechol

protocatechuate

vanillate

salicylate

benzoate

4-aminobenzoate

preQ₀

acrylonitrile

(R)-lipoate

coenzyme A

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

riboflavin

nicotinate

pyridoxal 5'-phosphate

pyridoxamine

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

all-trans-retinol

menadione

cholest-4-en-3-one

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

progesterone

17-β-hydroxy-5-α-androstan-3-one

campest-4-en-3β-ol

androst-4-ene-3,17-dione

cholest-5-en-3-one

17-α-hydroxyprogesterone

campesterol

(+)-7-epi-jasmonate

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

cis-dienelactone

trans-dienelactone

D-glucono-1,5-lactone

all-trans-retinyl palmitate

isobutanoyl-CoA

trans-feruloyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(+)-7-epi-jasmonoyl-CoA

4-hydroxybenzoyl-CoA

3'-dephospho-CoA

α-linolenoyl-CoA

linoleoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

methylacrylyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-hydroxyisovaleryl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

2-methylacetoacetyl-CoA

succinyl-CoA

acetyl-CoA

malonyl-CoA

2-methylbutanoyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

phytanoyl-CoA

(3Z)-dodec-3-enoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxystearoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxyoleoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(3R,7Z,10Z,13Z,16Z)-3-hydroxydocosatetraenoyl-CoA

(3R,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosapentaenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxypentanoyl-CoA

(3R,9Z,12Z,15Z,18Z)-3-hydroxytetracosatetraenoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(9Z,12Z,15Z,18Z)-3-oxotetracosatetraenoyl-CoA

(9Z,12Z,15Z,18Z,21Z)-3-oxotetracosapentaenoyl-CoA

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(Z)-15-tetracosenoyl-CoA

butanoyl-CoA

propanoyl-CoA

hexanoyl-CoA

decanoyl-CoA

octanoyl-CoA

lauroyl-CoA

2-hydroxyphytanoyl-CoA

pristanoyl-CoA

myristoyl-CoA

stearoyl-CoA

palmitoyl-CoA

(7Z,10Z,13Z,16Z)-3-oxodocosatetraenoyl-CoA

(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA

hexadecanedioyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxoadipyl-CoA

(6Z,9Z,12Z,15Z,18Z,21Z)-3-oxotetracosahexaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z)-3-oxotetracosapentaenoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

3-oxododecanoyl-CoA

3-oxodecanoyl-CoA

3-oxooctanoyl-CoA

3-oxohexanoyl-CoA

3-oxo-palmitoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

3-oxooctadecanoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

allantoate

acetamide

(S)-(+)-allantoin

5-amino-4-imidazolecarboxyamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

(3E)-2-oxohex-3-enedioate

chorismate

maleate

succinate

fumarate

L-aspartate

(S)-malate

α,ω-9Z-octadecenedioate

D-glucarate

D-galactarate

3-(carbamoylamino)-2-methylpropanoate

(1E)-4-oxobut-1-ene-1,2,4-tricarboxylate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

3-carboxy-cis,cis-muconate

cis-aconitate

(1E,3E)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate

D-threo-isocitrate

3-oxoadipate

pyruvate

acetate

formate

propanoate

(S)-lactate

(R)-lactate

decanoate

octanoate

laurate

7-hydroxylaurate

(R)-3-hydroxybutanoate

18-hydroxyoleate

18-hydroxystearate

16-hydroxypalmitate

(15Z)-tetracosenoate

α-linolenate

linoleate

stearate

palmitate

oleate

phytenate

orotate

(R)-pantoate

D-gluconate

5-deoxy-D-glucuronate

(S)-1-pyrroline-5-carboxylate

L-kynurenine

L-2-aminoadipate

carbamate

L-α-amino-ε-keto-pimelate

L-serine

creatine

β-alanine

(S)-3-amino-2-methylpropanoate

(R)-3-amino-2-methylpropanoate

glycine

L-proline

L-alanine

L-leucine

L-glutamine

D-glutamate

L-glutamate

L-lysine

L-histidine

L-arginine

L-tryptophan

L-tyrosine

L-phenylalanine

D-lysine

D-aspartate

D-alanine

seleno-L-homocysteine

L-aspartyl-4-phosphate

3-phospho-L-serine

sarcosine

N-carbamoyl-L-aspartate

N-carbamoylglycine

N-formyl-L-glutamate

formyl-L-isoglutamine

N-formimino-L-glutamate

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-acetyl-L-methionine

N-acetyl-L-glutamate

3-hydroxy-L-kynurenine

O-acetyl-L-homoserine

L,L-diaminopimelate

L-2,4-diaminobutanoate

L-isoleucine

L-valine

L-cystathionine

L-threonine

L-asparagine

L-ornithine

L-methionine

L-cysteine

L-isoglutamine

L-citrulline

hypoglycin A

L-canaline

O-succinyl-L-homoserine

L-glutamate-5-semialdehyde

1-aminocyclopropane-1-carboxylate

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

O-phospho-L-homoserine

L-homoserine

L-aspartate 4-semialdehyde

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

glyoxylate

4-(methylsulfanyl)-2-oxobutanoate

2-oxobutanoate

2-oxoglutarate

hypoglycin B

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

glycerophosphoserine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

hydroxyquinol

glycerol

D-arabinitol

D-ribitol

ethanol

methanol

1-octanol

1D-chiro-inositol

scyllo-inositol

myo-inositol

1-keto-D-chiro-inositol

3D-(3,5/4)-trihydroxycyclohexane-1,2-dione

scyllo-inosose

3-oxo-24-ethyl-cholest-5-ene

3-oxo-24-ethyl-cholest-4-ene

geranyl diphosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-heptaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-octaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-oleoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

4'-α-L-Ara4N-α-Kdo-(2→4)-α-Kdo-(2→6)-[P4'-α-L-ara4N]-lipid A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

heptosyl-Kdo₂-lipid A

(heptosyl)₂-Kdo₂-lipid A

α-Kdo-(2→6)-lipid IV_A

3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

1-(β-D ribofuranosyl)nicotinamide

α,α-trehalose

β-D-fructofuranose

keto-D-fructose

D-xylulose

L-ribulose

D-ribulose

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

β-D-ribopyranose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

N-acetyl-β-D-mannosamine

D-glyceraldehyde

glycolaldehyde

α-D-glucopyranose

β-D-glucopyranose

β-D-galactopyranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

α,α-trehalose 6-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-α-D-galactofuranose

UDP-α-D-glucuronate

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-α-D-galactose

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-β-L-threo-pentapyranos-4-ulose

UDP-4-amino-4-deoxy-β-L-arabinopyranose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

GDP-α-D-mannose

GDP-α-D-rhamnose

GDP-4-dehydro-α-D-rhamnose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

4-phospho-D-erythronate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-arabinofuranose 5-phosphate

aldehydo-D-arabinose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose-1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

D-galactonate

L-gulonate

L-idonate

diacetyl

acetone

methylglyoxal

3-(N-morpholino)propanal

formaldehyde

acetaldehyde

butan-1-al

1-octanal

precorrin-4

precorrin-5

precorrin-7

precorrin-8x

precorrin-6B

precorrin-6A

precorrin-2

precorrin-3A

hydantoin

uridine 2'3'-cyclic monophosphate

cytidine 2',3'-cyclic monophosphate

CDP-choline

dCMP

cytosine

uracil

5,6-dihydrothymine

5,6-dihydrouracil

cytidine-3'-monophosphate

uridine 3'-monophosphate

dTTP

dTMP

dTDP

dCTP

UTP

CTP

dUDP

UDP

dCDP

CDP

dUTP

dUMP

5-fluorouracil

CMP

UMP

cytidine

uridine

thymine

guanine

adenine

hypoxanthine

isoguanine

preQ₁

xanthosine

guanosine

inosine

adenosine

2'-deoxyguanosine

ITP

GTP

ATP

IDP

GDP

ADP

XMP

GMP

IMP

AMP

dITP

dGTP

dATP

dIDP

dADP

dGDP

dGMP

dAMP

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

7,8-dihydropteroate

6-carboxy-5,6,7,8-tetrahydropterin

(3R)-vestitone

adenosine 2',3'-cyclic monophosphate

guanosine 2',3'-cyclic monophosphate

1-(5-phospho-β-D-ribosyl)-AMP

8-oxo-dGTP

8-oxo-dGMP

pppGpp

ppGpp

5'-deoxyadenosine

guanosine 3'-monophosphate

adenosine 3'-monophosphate

1-(5-phospho-β-D-ribosyl)-ATP

adenylo-succinate

8-oxo-GTP

8-oxo-GMP

5-fluorocytosine

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CTP

5-hydroxy-CMP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA