an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

succinate semialdehyde

4-aminobutanoate

3-oxopropanoate

H₂O

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

4-guanidinobutanoate

4-guanidinobutyramide

acrylate

acrylamide

(indol-3-yl)acetamide

propionamide

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

CO₂

oxalosuccinate

citrate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

orotidine 5'-phosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

(E)-4-coumaroyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

2,3-didehydroadipyl-CoA

4-maleyl-acetoacetate

homogentisate

nicotinate adenine dinucleotide

L-canavanine

canavaninosuccinate

L-arginino-succinate

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

phosphoenolpyruvate

oxaloacetate

5-methylsalicylate

4-methylsalicylate

5-methylcytosine

N-acetyl-L-glutamate 5-semialdehyde

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

2-oxovalerate

3-ethylmalate

4-methyl-2-oxopentanoate

(2S)-2-isopropyl-3-oxosuccinate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(2S)-2-isopropylmalate

5-enolpyruvoyl-shikimate 3-phosphate

carbamoyl phosphate

α-D-glucosamine 1-phosphate

carboxyphosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

glycerone phosphate

acetyl phosphate

3-ureidopropanoate

5-guanidino-2-oxopentanoate

2,5-didehydro-D-gluconate

2-keto-D-gluconate

L-histidinol phosphate

imidazole acetol-phosphate

N-acetylglutamyl-phosphate

2-dehydropantoate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

prenyl diphosphate

isopentenyl diphosphate

acetoacetate

porphobilinogen

5-aminolevulinate

quinolinate

β-nicotinate D-ribonucleotide

3-dehydroshikimate

shikimate

(S)-4-amino-5-oxopentanoate

(indol-3 yl)acetyl-CoA

(indol-3-yl)pyruvate

anthranilate

N-(5-phosphoribosyl)-anthranilate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

γ-L-glutamyl 5-phosphate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

4-phosphooxy-L-threonine

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

3-phosphooxypyruvate

O-ureido-L-homoserine

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

coproporphyrinogen III

3-deoxy-D-manno-octulosonate 8-phosphate

urea-1-carboxylate

urea

carbon monoxide

2-protocatechuoylphloroglucinolcarboxylate

O-acetyl-L-serine

pimeloyl-CoA

pimelate

lipid X

L-gulono-1,4-lactone

methyl-1,4-benzoquinol

2-methyl-1,4-benzoquinone

4-hydroxy-2-nonenal

3-dehydroquinate

selenophosphate

5-carboxymethyl-2-hydroxymuconate

glycolate

(2E)-3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)prop-2-enoate

3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate

3-phenylpropanoate

(S)-dihydroorotate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

hydroxypyruvate

hydrogen peroxide

(4,5-dihydro-5-oxofuran-2-yl)-acetate

3-dehydro-2-deoxy-D-gluconate

2-deoxygluconate

2-oxopent-4-enoate

(S)-4-hydroxy-2-oxopentanoate

thiamine diphosphate

thiamine phosphate

5-amino-6-(D-ribitylamino)uracil

4'-phosphopantetheine

(4Z)-2-oxohept-4-enedioate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

2-succinylbenzoate

4-fumaryl-acetoacetate

(lipoyl)adenylate

formamide

4-amino-4-deoxychorismate

lipid A disaccharide (E. coli)

2-C-methyl-D-erythritol 4-phosphate

carbonic acid

(R)-mandelate

(S)-mandelate

(2R,3S)-3-methylmalate

citraconate

(2E)-2-methyl-4,6-dioxohept-2-enedioate

3-methylgentisate

(2E)-3-methyl-4,6-dioxohept-2-enedioate

4-methylgentisate

3-maleylpyruvate

5-dehydro-D-gluconate

L-selenocystathionine

N-succinyl-L,L-2,6-diaminopimelate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

(R)-4'-phosphopantothenate

(R)-4-phosphopantoate

histidinol

histidinal

preuroporphyrinogen

2-oxoadipate

2'-hydroxypseudobaptigenin

(3R)-sophorol

2-hydroxyformononetin

(S)-5-amino-3-oxohexanoate

(24R,25R)-3α,7α,24-trihydroxy-5β-cholestanoyl CoA

(24E)-3α,7α-dihydroxy-5β-cholest-24-enoyl-CoA

N⁵-carboxyaminoimidazole ribonucleotide

5-phospho-α-D-ribose 1,2-cyclic phosphate

α-D-ribose-1-methylphosphonate 5-phosphate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

2-aminoacetaldehyde

N-ethylammeline

deethylsimazine

ADP-L-glycero-β-D-manno-heptose

5-oxo-L-proline

tartronate semialdehyde

glutathione disulfide

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-phosphonopyruvate

phthalate 4,5-cis-dihydrodiol

phthalate

4,5-dihydroxyphthalate

S-formylglutathione

D-erythro-imidazole-glycerol-phosphate

2-pyrone-4,6-dicarboxylate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

oxalate

2-hydroxy-3-oxosuccinate

meso-tartrate

L-tartrate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate

DNA without lesion

trans-O-hydroxybenzylidenepyruvate

xanthine

2-maleylacetate

N-Formyl-L-kynurenine

S-methyl-5'-thioadenosine

S-adenosyl 3-(methylsulfanyl)propylamine

3-amino-1-hydroxyacetone 1-phosphate

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

8-amino-7-oxononanoate

(4-hydroxyphenyl)acetate

3-hydroxyanthranilate

S-ribosyl-L-homocysteine

(R)-pantothenate

lipid IV_A

shikimate 3-phosphate

(2-hydroxyphenyl)acetate

N²-succinylglutamate

cis,cis-muconate

(+)-muconolactone

muconolactone

5-amino-6-(5-phospho-D-ribosylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

N-acetyl-D-muramate 6-phosphate

methylsalicylate

salicyl alcohol

cis-3,4-dehydroadipyl-CoA semialdehyde

2,3-epoxy-2,3-dihydrobenzoyl-CoA

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

2-iminoacetate

3-deoxy-α-D-manno-2-octulosonate

2-phosphoglycolate

N6'-acetylkanamycin-B

2-dehydro-3-deoxy-D-galactonate 6-phosphate

2-dehydro-3-deoxy-D-galactonate

D-glycero-β-D-manno-heptose 1-phosphate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

propanoyl phosphate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

(2S)-4-acetamido-2-aminobutanoate

ectoine

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

7-carboxy-7-deazaguanine

4-methyl-3-oxoadipate

4-methyl-3-oxoadipate-enol-lactone

3-methylmuconolactone

hydrogen selenide

ADP-D-glycero-β-D-manno-heptose

prephenate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

5-dehydro-4-deoxy-D-glucarate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-mercaptopyruvate

urocanate

4-imidazolone-5-propanoate

2-amino-3-carboxymuconate-6-semialdehyde

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

trans-2,3-dehydroadipyl-coA

cis-3,4-dehydroadipyl-CoA

itaconate

1,4-dihydroxy-2-naphthoate

5-amino-6-(5-phospho-D-ribitylamino)uracil

autoinducer 2

(2E,4Z)-4-hydroxy-6-oxohexa-2,4-dienoate

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

D-gluconate 6-phosphate

3-hydroxypropanoate

N-ethylammelide

(S)-ureidoglycolate

H₂

5-(hydroxymethyl)-2-methylphenol

3-hydroxy-4-methylbenzaldehyde

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

1,4-dihydroxy-2-naphthoyl-CoA

(2Z,4E)-2-hydroxy-6-oxonona-2,4-diene-1,9-dioate

3-(3-hydroxyphenyl)propanoate

3-(2,3-dihydroxyphenyl)propanoate

glutathioselenol

selenodiglutathione

2-keto-L-gulonate

(L-seryl)adenylate

protoanemonin

(2,3-dihydroxybenzoyl)adenylate

4-oxoglutaramate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

enol-phenylpyruvate

ammonia

(2E)-2-hydroxypenta-2,4-dienoate

(3E)-2-oxopent-3-enoate

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

sulfate

molybdate

nitrate

hydrogencarbonate

selenate

sulfite

superoxide

selenide

thiosulfate

OH^-

selenite

hydrogensulfite

chloride

phosphonate

phosphate

diphosphate

triphosphate

Fe³⁺

Co²⁺

Zn²⁺

Mo²⁺

Mg²⁺

Fe²⁺

ammonium

H⁺

K⁺

2-chloroacetate

5-chloro-4-hydroxy-2-oxopentanoate

5-chloro-5-deoxy-D-ribonate

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

3-chloro-cis,cis-muconate

4-chlorocatechol

4-chlorosalicylate

5-chlorosalicylate

5-fluoro-5-deoxy-D-ribose 1-phosphate

5'-deoxy-5'-fluoroadenosine

N-acetyl-β-neuraminate

2,4-dinitrophenyl-S-glutathione

1-chloro-2,4-dinitrobenzene

acrylonitrile

preQ₀

(indole-3-yl)acetonitrile

hydrogen cyanide

phenylacetonitrile

2-methoxy-6-(all-trans-octaprenyl)phenol

2-octaprenylphenol

(S)-3-hydroxy-isobutanoate

3-(all-trans-octaprenyl)benzene-1,2-diol

(R)-4-hydroxymandelate

(S)-4-hydroxymandelate

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

(R)-citramalate

CMP-N-acetyl-β-neuraminate

(S)-ureidoglycine

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(2R)-2,3-dihydroxy-3-methylbutanoate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 3-phosphate

2-iminobutanoate

2-iminopropanoate

2-iminosuccinate

oxygen

hydrogen sulfide

protoporphyrinogen IX

protoporphyrin IX

uroporphyrinogen-III

coproporphyrinogen I

uroporphyrinogen-I

hemin

siroheme

protoheme

cob(I)alamin

adenosylcobalamin

adenosylcobinamide

cob(I)inamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

carboxyphosphinopyruvate

phosphonoacetaldehyde

1-carboxyvinyl carboxyphosphonate

3-(hydroxyphosphinoyl)pyruvate

ethylphosphate

(Z)-phenylacetaldehyde oxime

phenylacetate

L-homocysteine

4-methylphenol

DNA with lesion

(glutathion-S-yl)-4-hydroxy-2-nonenal

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

hypoglycin B

carbamate

L-2-aminoadipate

L-kynurenine

L-α-amino-ε-keto-pimelate

L-aspartyl-4-phosphate

iminoarginine

seleno-L-homocysteine

D-nopaline

O-acetyl-L-homoserine

trans-4-hydroxy-L-proline

3-hydroxy-L-kynurenine

N-carbamoylglycine

N-formyl-L-glutamate

formyl-L-isoglutamine

N-acetyl-L-ornithine

N-acetyl-L-citrulline

N-formimino-L-glutamate

N-acetyl-L-glutamate

N-acetyl-L-methionine

N-carbamoyl-L-aspartate

3-phospho-L-serine

L-cysteine

L-methionine

L-glutamate

L-aspartate

L-ornithine

L-glutamine

L-arginine

L-alanine

L-tryptophan

L-leucine

L-isoleucine

L-valine

L-proline

L-serine

L-tyrosine

L-threonine

L-2,4-diaminobutanoate

L-phenylalanine

L-lysine

L-cystathionine

L,L-diaminopimelate

L-histidine

L-selenocysteine

L-isoglutamine

D-arginine

D-alanine

D-glutamate

glycine

β-alanine

(S)-3-amino-2-methylpropanoate

(R)-3-amino-2-methylpropanoate

L-citrulline

L-aspartate 4-semialdehyde

O-phospho-L-homoserine

L-homoserine

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-glutamate-5-semialdehyde

L-canaline

hypoglycin A

3-sulfino-L-alanine

S-sulfo-L-cysteine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

7-hydroxylaurate

laurate

octanoate

decanoate

acetate

pyruvate

formate

propanoate

(R)-lactate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

2-hydroxy-4-oxobutane-1,2,4-tricarboxylate

(1E)-4-oxobut-1-ene-1,2,4-tricarboxylate

2-oxoglutarate

2-oxobutanoate

glyoxylate

4-(methylsulfanyl)-2-oxobutanoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

3-oxoadipate

cis-aconitate

3-carboxy-cis,cis-muconate

cis-2-methylaconitate

(2S,3S)-2-methylcitrate

(2R,3S)-2-methylisocitrate

(1E,3E)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate

D-threo-isocitrate

3-(carbamoylamino)-2-methylpropanoate

chorismate

(3E)-2-oxohex-3-enedioate

(2Z,4E,7E)-2-hydroxy-6-oxonona-2,4,7-triene-1,9-dioate

α,ω-9Z-octadecenedioate

D-galactarate

D-glucarate

succinate

fumarate

(S)-malate

salicylate

trans-cinnamate

protocatechuate

2,3-dihydroxybenzoate

4-aminobenzoate

3-hydroxy-5-methyl-benzoate

3-hydroxy-4-methyl-benzoate

orotate

D-gluconate

(R)-pantoate

gentisate

allantoate

(S)-1-pyrroline-5-carboxylate

pristanate

(15Z)-tetracosenoate

stearate

palmitate

arachidate

myristate

18-hydroxystearate

16-hydroxypalmitate

18-hydroxyoleate

phytenate

oleate

(3E,5Z)-tetradecadienoate

di-homo-γ-linolenate

linoleate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoate

dinor-12-oxo-phytodienoate

8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-enyl}cyclopentyl]octanoate

(R)-3-hydroxybutanoate

nicotinamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

(S)-(+)-allantoin

acetamide

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

(heptosyl)₂-Kdo₂-lipid A

heptosyl-Kdo₂-lipid A

α-Kdo-(2→6)-lipid IV_A

4-O-phospho-α-Kdo8N-(2→6)-lipid IV_A

α-Kdo8N-(2→6)-lipid IV_A

4-O-phospho-α-Kdo-(2→6)-lipid IV_A

kanamycin B

(2E,6E)-farnesyl diphosphate

trans,octacis-decaprenyl phosphate

geranyl diphosphate

all-trans-retinyl palmitate

all-trans-retinol

enterobactin

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

2-trans-nonenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

4-cis-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

(3E)-dec-3-enoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

4-trans-undecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

3-octaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

3-hexaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-nonaprenyl diphosphate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

1-oleoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

L-gulonate

D-galactonate

L-idonate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

5-phospho-α-D-ribose 1-diphosphate

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

4-phospho-D-erythronate

α-D-mannose 1-phosphate

α-D-glucopyranose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-arabinofuranose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

CMP-3-deoxy-β-D-manno-octulosonate

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

dTDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-glucose

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-α-D-glucuronate

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-α-D-galactose

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

GDP-α-D-mannose

glycerol

D-glyceraldehyde

α-L-arabinopyranose

glycolaldehyde

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-mannosamine

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

ethanol

methanol

hydroquinone

4-methylcatechol

catechol

myo-inositol

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 2-monophosphate

1D-myo-inositol 4-monophosphate

acetaldehyde

isobutanal

formaldehyde

methylglyoxal

diacetyl

4-hydroxyacetophenone

menadione

3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone

6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone

caldariellaquinone

toluene

4-hydroxybenzoate

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

2-hydroxylaminobenzoate

3,5-xylenol

3-(hydroxymethyl)-5-methylphenol

3-hydroxy-5-methylbenzaldehyde

2,5-xylenol

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

2,3-dihydroxy-trans-cinnamate

3-hydroxy-trans-cinnamate

quercetin

menadiol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

caldariellaquinol

3-demethylubiquinol-8

demethylmenaquinol-11

demethylmenaquinol-13

demethylmenaquinol-12

demethylmenaquinol-7

demethylmenaquinol-6

demethylmenaquinol-10

demethylmenaquinol-8

demethylmenaquinol-9

menaquinol-11

menaquinol-13

menaquinol-12

menaquinol-7

menaquinol-6

menaquinol-10

menaquinol-8

menaquinol-9

ubiquinol-8

(3R)-vestitone

2-hydroxychromene-2-carboxylate

adenine

guanine

AMP

IMP

GMP

XMP

ATP

GTP

ITP

ADP

IDP

GDP

dGDP

dADP

dIDP

dGTP

dATP

dITP

dAMP

dGMP

hypoxanthine

adenosine

inosine

guanosine

xanthosine

2'-deoxyinosine

2'-deoxyadenosine

2'-deoxyguanosine

tetrahydromethanopterin

6-carboxy-5,6,7,8-tetrahydropterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydromonapterin

7,8-dihydroneopterin

7,8-dihydroneopterin 3'-triphosphate

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

5,10-methylene-tetrahydromethanopterin

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

FMNH₂

reduced riboflavin

FADH₂

FMN

riboflavin

FAD

6,7-dimethyl-8-(1-D-ribityl)lumazine

hydantoin

sirohydrochlorin

precorrin-2

precorrin-1

preQ₁

isoguanine

uracil

cytosine

thymine

UTP

CTP

dUMP

dUTP

5,6-dihydrouracil

5,6-dihydrothymine

CDP

dCDP

UDP

dUDP

dTMP

dCTP

dTTP

dTDP

dCMP

5-fluorouracil

UMP

CMP

uridine

cytidine

thymidine

2'-deoxyuridine

2'-deoxycytidine

coenzyme A

(R)-lipoate

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

5'-deoxyadenosine

adenylo-succinate

cyclic-AMP

ppGpp

pppGpp

8-oxo-GTP

8-oxo-dGTP

5-fluorocytosine

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

5-hydroxy-CMP

5-hydroxy-CTP

2-hydroxy-dATP

cyclic di-3',5'-guanylate

NADP⁺

NAD⁺

NADPH

NADH

(S)-NADPHX

(R)-NADPHX

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

glycine betaine

(S)-NADHX

(R)-NADHX

nicotinate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxamine 5'-phosphate

ethene

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

(+)-7-epi-jasmonate

(25S)-3-oxocholest-4-en-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oate

3,22-dioxochol-4-en-24-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

cholate

glycocholate

methane

D-glucono-1,5-lactone

trans-dienelactone

cis-dienelactone

acetyl-CoA

2-methylacetoacetyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

isobutanoyl-CoA

methylacrylyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

(E)-2-methylcrotonoyl-CoA

3-hydroxyisovaleryl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

succinyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

malonyl-CoA

3'-dephospho-CoA

3-methylglutaconyl-CoA

3-methylcrotonyl-CoA

isovaleryl-CoA

(S)-3-aminobutanoyl-CoA

(24E)-3α,7α,12α-trihydroxy-5β-cholest-24-enoyl-CoA

(24R,25R)-3α,7α,12α,24-tetrahydroxy-5β-cholestanoyl CoA

oxalyl-CoA

formyl-CoA

(+)-7-epi-jasmonoyl-CoA

dihomo γ-linolenoyl-CoA

4-hydroxybenzoyl-CoA

anthraniloyl-CoA

gentisyl-CoA

salicyl-CoA

itaconyl-CoA

phenylacetyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

benzoyl-CoA

acryloyl-CoA

3-hydroxypropanoyl-CoA

2-methylbutanoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxoadipyl-CoA

(9Z,12Z,15Z,18Z,21Z)-3-oxotetracosapentaenoyl-CoA

(7Z,10Z,13Z,16Z)-3-oxodocosatetraenoyl-CoA

(9Z,12Z,15Z,18Z)-3-oxotetracosatetraenoyl-CoA

3-oxo-myristoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-palmitoyl-CoA

3-oxooctadecanoyl-CoA

(6Z,9Z,12Z,15Z,18Z)-3-oxotetracosapentaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z,21Z)-3-oxotetracosahexaenoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

3-oxohexanoyl-CoA

3-oxodecanoyl-CoA

3-oxooctanoyl-CoA

3-oxododecanoyl-CoA

16-hydroxypalmitoyl-CoA

hexadecanedioyl-CoA

(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA

(3R,7Z,10Z,13Z,16Z)-3-hydroxydocosatetraenoyl-CoA

stearoyl-CoA

palmitoyl-CoA

icosanoyl-CoA

myristoyl-CoA

18-hydroxystearoyl-CoA

18-hydroxyoleoyl-CoA

pristanoyl-CoA

2-hydroxyphytanoyl-CoA

phytanoyl-CoA

7-hydroxylauroyl-CoA

lauroyl-CoA

octanoyl-CoA

decanoyl-CoA

hexanoyl-CoA

propanoyl-CoA

butanoyl-CoA

(Z)-15-tetracosenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosapentaenoyl-CoA

(3R,9Z,12Z,15Z,18Z)-3-hydroxytetracosatetraenoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(3R)-3-hydroxypentanoyl-CoA

(3Z)-dodec-3-enoyl-CoA

(3S)-citramalyl-CoA

phytenoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

crotonyl-CoA

S-(hydroxymethyl)glutathione

3-sulfopyruvate

L-cysteate

taurine

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

methanethiol

glutathione

thiocyanate

(R)-S-lactoylglutathione

betaine aldehyde

agmatine

putrescine

spermidine

cadaverine

spermine

N-acetylputrescine

N¹-acetylspermine

N¹-acetylspermidine

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

hydroxyl radical