an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

picolinate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1-piperideine 6-carboxylate

(3E)-2-oxopent-3-enoate

1,2-dihydro-β-NADP

enol-phenylpyruvate

4-oxoglutaramate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2E)-2-hydroxypenta-2,4-dienoate

4-oxalocrotonate

ammonia

selenodiglutathione

glutathioselenol

protoanemonin

isopropylamine

1,4-dihydroxy-2-naphthoate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

hydrogen selenide

γ-butyrobetaine

(L-seryl)adenylate

4-aminobutanoate

autoinducer 2

naphthalene-1,2-diol

mercuriphenyl acetate

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

(S)-ureidoglycolate

8-amino-7-oxononanoate

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

H₂

5-amino-6-(5-phospho-D-ribitylamino)uracil

vanillin

3-hydroxypropanoate

cis-3,4-dehydroadipyl-CoA

trans-2,3-dehydroadipyl-coA

3-hydroxy-4-methylbenzaldehyde

5-(hydroxymethyl)-2-methylphenol

3-(3-hydroxyphenyl)propanoate

(2Z,4E)-2-aminomuconate

6-phospho D-glucono-1,5-lactone

dialurate

(R)-1-amino-2-propanol O-2-phosphate

α-ribazole

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

2-hydroxy-5-carboxymethylmuconate semialdehyde

(24E)-3α,7α-dihydroxy-5β-cholest-24-enoyl-CoA

(24R,25R)-3α,7α,24-trihydroxy-5β-cholestanoyl CoA

2-dehydro-3-deoxy-D-gluconate

4-hydroxylaminobenzoate

N-Formyl-L-kynurenine

5-methylcytosine

4-methylgentisate

(2E)-3-methyl-4,6-dioxohept-2-enedioate

3-methylgentisate

(2E)-2-methyl-4,6-dioxohept-2-enedioate

3-maleylpyruvate

3-fumarylpyruvate

3-hydroxyanthranilate

2,3-epoxy-2,3-dihydrobenzoyl-CoA

cis-3,4-dehydroadipyl-CoA semialdehyde

glutathione disulfide

(2-hydroxyphenyl)acetate

3-(2,3-dihydroxyphenyl)propanoate

(2Z,4E)-2-hydroxy-6-oxonona-2,4-diene-1,9-dioate

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

creatinine

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribosylamino)uracil

lipid X

acetyl phosphate

formamide

L-tartrate

meso-tartrate

2-hydroxy-3-oxosuccinate

lipid A disaccharide (E. coli)

D-erythro-imidazole-glycerol-phosphate

preuroporphyrinogen

propanoyl phosphate

citraconate

(2R,3S)-3-methylmalate

(S)-2-amino-6-oxohexanoate

carboxynorspermidine

norspermidine

2-hydroxy-cyclohexane-1-carbonyl-CoA

2-ketocyclohexane-1-carbonyl-CoA

cyclohexane-1-carboxylate

cyclohexane-1-carbonyl-CoA

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

(R)-4-phosphopantoate

3-phosphooxypyruvate

selenophosphate

urea-1-carboxylate

4'-phosphopantetheine

2,4-dichlorophenoxyacetate

phosphonoacetate

2-dehydro-3-deoxy-D-galactonate

D-gluconate 6-phosphate

L-gulono-1,4-lactone

coproporphyrinogen III

prephenate

xanthine

(S)-5-hydroxyisourate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

7-carboxy-7-deazaguanine

5-oxo-L-proline

histidinal

2-maleylacetate

3-mercaptopyruvate

pimelate

pimeloyl-CoA

S-Inosyl-L-homocysteine

histidinol

2-oxoadipate

(S)-2-formylglutarate

6-oxo-1,4,5,6-tetrahydronicotinate

6-hydroxynicotinate

sinapate

sinapoyl-CoA

5-hydroxyferulate

5-hydroxy-feruloyl-CoA

3-methyl-2-butenal

thiamine diphosphate

2-phosphoglycolate

2-protocatechuoylphloroglucinolcarboxylate

carbon monoxide

methylsalicylate

salicyl alcohol

N²-succinylglutamate

lipid IV_A

nicotine-1'-N-oxide

N,N-dimethylaniline

N,N-dimethylaniline-N-oxide

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

β-D-ribosylnicotinate

3-deoxy-D-manno-octulosonate 8-phosphate

3-deoxy-α-D-manno-2-octulosonate

(S)-5-amino-3-oxohexanoate

5-amino-6-(D-ribitylamino)uracil

pyrogallol

1,2,3,5-tetrahydroxybenzene

phloroglucinol

cyclopentanol

cyclopentanone

(2,3-dihydroxybenzoyl)adenylate

(L-aspartyl)adenylate

(1R,2S)-1,2-dihydronaphthalene-1,2-diol

trans-O-hydroxybenzylidenepyruvate

4,5-dihydroxyphthalate

phthalate

phthalate 4,5-cis-dihydrodiol

2-pyrone-4,6-dicarboxylate

3-phenylpropanoate

3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate

(2E)-3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)prop-2-enoate

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

2-aminoacetaldehyde

carbonic acid

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(1R,2S)-cyclohexa-3,5-diene-1,2-diol

4-phosphooxy-L-threonine

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

2-amino-3-carboxymuconate-6-semialdehyde

(2Z,4E)-2-amino-6-oxohexa-2,4-dienoate

(2R,3S)-2,3-dihydroxy-2,3-dihydro-p-cumate

2,3-dihydroxy-p-cumate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

chloroacetaldehyde

2-oxopent-4-enoate

(S)-4-hydroxy-2-oxopentanoate

(2E,4Z)-2-hydroxy-6-oxohepta-2,4-dienoate

(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate

(2E,4Z)-2-hydroxymuconate

(2Z,4E)-2-hydroxy-5-methyl-6-oxohexa-2,4-dienoate

2-hydroxy-6-oxohepta-2,4-dienoate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

2-methyl-1,4-benzoquinone

methyl-1,4-benzoquinol

(lipoyl)adenylate

S-ribosyl-L-homocysteine

orotidine 5'-phosphate

N⁵-carboxyaminoimidazole ribonucleotide

thiamine phosphate

methylamine

N-ethylglycine

2-iminoacetate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

DNA without lesion

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

O-acetyl-L-serine

2-succinylbenzoate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

4-hydroxy-2-nonenal

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(4Z)-2-oxohept-4-enedioate

4-fumaryl-acetoacetate

4-amino-4-deoxychorismate

2,5-dihydroxypyridine

N-formylmaleamate

oxalate

(S)-mandelate

(R)-mandelate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

N-succinyl-L,L-2,6-diaminopimelate

4-methyl-3-oxoadipate

5-carboxymethyl-2-hydroxymuconate

O-ureido-L-homoserine

glycolate

hydroxypyruvate

2-dehydropantoate

hydrogen peroxide

(R)-pantothenate

(R)-4'-phosphopantothenate

porphobilinogen

shikimate

3-deoxy-D-arabino-heptulosonate 7-phosphate

carboxyphosphate

2-C-methyl-D-erythritol 4-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

L-selenocystathionine

1-deoxy-L-glycero-tetrulose 4-phosphate

acrylamide

acrylate

propionamide

4-guanidinobutyramide

4-guanidinobutanoate

(indol-3-yl)acetamide

oxalosuccinate

γ-L-glutamyl 5-phosphate

ethanolamine

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

α-D-glucosamine 1-phosphate

canavaninosuccinate

L-canavanine

L-arginino-succinate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(E)-3-(methoxycarbonyl)pent-2-enedioate

citrate

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

carbamoyl phosphate

(S)-dihydroorotate

succinate semialdehyde

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

2-dehydro-3-deoxy-D-galactonate 6-phosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2,5-dioxopentanoate

5-dehydro-4-deoxy-D-glucarate

3-dehydroquinate

3-dehydroshikimate

S-formylglutathione

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

hydroxyatrazine

N-isopropylammelide

ethylamine

nicotinate adenine dinucleotide

(S)-3-methyl-2-oxopentanoate

oxaloacetate

phosphoenolpyruvate

urocanate

4-imidazolone-5-propanoate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

imidazole acetol-phosphate

L-histidinol phosphate

urea

N-(5-phosphoribosyl)-anthranilate

anthranilate

tartronate semialdehyde

isopentenyl diphosphate

prenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

3-oxopropanoate

S-adenosyl 3-(methylsulfanyl)propylamine

S-methyl-5'-thioadenosine

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

β-nicotinate D-ribonucleotide

quinolinate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

1,4-dihydroxy-2-naphthoyl-CoA

acetoacetate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3-ureidopropanoate

4-methylsalicylate

5-methylsalicylate

homogentisate

4-maleyl-acetoacetate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

glycerone phosphate

CO₂

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

3-methyl-2-oxobutanoate

(2S)-2-isopropylmalate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

2,3-didehydroadipyl-CoA

5-dehydro-D-gluconate

H₂O

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

4-methylphenol

L-homocysteine

phenylacetate

(Z)-phenylacetaldehyde oxime

ethylphosphate

carboxyphosphinopyruvate

3-(hydroxyphosphinoyl)pyruvate

1-carboxyvinyl carboxyphosphonate

hydrogen cyanide

adenosylcobalamin

cob(I)alamin

adenosylcobyrate

adenosylcobalamin 5'-phosphate

adenosyl-cobinamide phosphate

adenosylcobinamide-GDP

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

protoheme

uroporphyrinogen-III

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrinogen IX

protoporphyrin IX

Hg⁰

hydrogen sulfide

oxygen

2-iminosuccinate

2-iminopropanoate

2-iminobutanoate

2-chloroacetate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(S)-ureidoglycine

(R)-citramalate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

3-(all-trans-octaprenyl)benzene-1,2-diol

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

ethene

3-chloro-cis,cis-muconate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

3,5-dichlorocatechol

2,4-dichlorophenol

5-chlorosalicylate

4-chlorosalicylate

4-chlorocatechol

2-nitrobenzoate

4-nitrobenzoate

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

FAD

FADH₂

FMNH₂

FMN

(S)-NADHX

(R)-NADHX

caldariellaquinol

ubiquinol-8

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-8

caldariellaquinone

NADH

NADPH

NADP⁺

NAD⁺

glycine betaine

hydroxyl radical

superoxide

(2E,6E)-farnesyl diphosphate

pristanate

Fe³⁺

ammonium

K⁺

H⁺

Hg²⁺

Fe²⁺

sulfate

hydrogensulfite

selenite

OH^-

selenide

hydrogencarbonate

selenate

sulfite

phosphate

triphosphate

diphosphate

chloride

S-(hydroxymethyl)glutathione

thiocyanate

methanethiol

glutathione

S-sulfanylglutathione

4-methyl-5-(2-phosphooxyethyl)thiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

taurine

L-cysteate

3-sulfopyruvate

1-butanesulfonate

3-(N-morpholino)propanesulfonate

isethionate

dodecyl sulfate

3-sulfocatechol

(R)-S-lactoylglutathione

betaine aldehyde

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

cadaverine

putrescine

spermidine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-cysteinylglycine

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

cyanuric acid

2-hydroxylaminobenzoate

urate

salicylaldehyde

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

3-hexaprenyl-4-hydroxybenzoate

naphthalene

benzene

4-hydroxybenzoate

atrazine

benzaldehyde

phenylacetonitrile

menadiol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

2,5-xylenol

3-hydroxy-5-methylbenzaldehyde

3-(hydroxymethyl)-5-methylphenol

3,5-xylenol

phenol

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

3-hydroxy-trans-cinnamate

2,3-dihydroxy-trans-cinnamate

4-coumarate

ferulate

trans-caffeate

quercetin

3,4-dihydroxyphenylacetate

8'-(3,4-dihydroxy-5-alkenyl)phenyl-3-[9'E,11'E,13'Z-pentadecatrienyl]catechol

2,3-dihydroxybenzoate

3-methylcatechol

4-methylcatechol

catechol

protocatechuate

3-[(8Z,11E,13Z)-pentadeca-8,11,13-trien-1-yl] )catechol

dimeric urushiol peroxide

vanillate

trans-cinnamate

salicylate

3-hydroxy-4-methyl-benzoate

3-hydroxy-5-methyl-benzoate

4-aminobenzoate

benzoate

acrylonitrile

preQ₀

(R)-lipoate

coenzyme A

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

thio-molybdenum cofactor

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

(6R)-L-erythro-5,6,7,8-tetrahydrobiopterin

nicotinamide

nicotinate

riboflavin

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

all-trans-retinol

L-carnitine

menadione

3-oxo-23,24-bisnorchol-1,4-dien-22-yl-CoA

cholest-4-en-3-one

cholest-dien-3-one

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

androsta-1,4-diene-3,17-dione

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

cis-dienelactone

trans-dienelactone

D-glucono-1,5-lactone

all-trans-retinyl palmitate

2-methylbutanoyl-CoA

γ-butyrobetainyl-CoA

3-hydroxypropanoyl-CoA

acryloyl-CoA

(24R,25R)-3α,7α,12α,24-tetrahydroxy-5β-cholestanoyl CoA

(24E)-3α,7α,12α-trihydroxy-5β-cholest-24-enoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

(+)-7-epi-jasmonoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

3'-dephospho-CoA

phenylacetyl-CoA

salicyl-CoA

gentisyl-CoA

anthraniloyl-CoA

trans-caffeoyl-CoA

benzoyl-CoA

trans-feruloyl-CoA

(S)-3-aminobutanoyl-CoA

L-carnitinyl-CoA

crotonobetainyl-CoA

dihomo γ-linolenoyl-CoA

isovaleryl-CoA

3-methylcrotonyl-CoA

3-methylglutaconyl-CoA

(3S)-citryl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

4-hydroxybenzoyl-CoA

formyl-CoA

oxalyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

isobutanoyl-CoA

malonyl-CoA

succinyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3E)-undec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

2-methylacetoacetyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

acetyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

methylacrylyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-hydroxyisovaleryl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(2E)-dodec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(3Z)-dodec-3-enoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxyoleoyl-CoA

18-hydroxystearoyl-CoA

16-hydroxypalmitoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(S)-3-hydroxytetradecanoyl-CoA

(3R,7Z,10Z,13Z,16Z)-3-hydroxydocosatetraenoyl-CoA

(3R,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosapentaenoyl-CoA

(3R)-3-hydroxypentanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(3R,9Z,12Z,15Z,18Z)-3-hydroxytetracosatetraenoyl-CoA

(9Z,12Z,15Z,18Z)-3-oxotetracosatetraenoyl-CoA

(9Z,12Z,15Z,18Z,21Z)-3-oxotetracosapentaenoyl-CoA

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(Z)-15-tetracosenoyl-CoA

butanoyl-CoA

propanoyl-CoA

hexanoyl-CoA

decanoyl-CoA

octanoyl-CoA

lauroyl-CoA

pristanoyl-CoA

myristoyl-CoA

stearoyl-CoA

palmitoyl-CoA

icosanoyl-CoA

(7Z,10Z,13Z,16Z)-3-oxodocosatetraenoyl-CoA

hexadecanedioyl-CoA

(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxoadipyl-CoA

(6Z,9Z,12Z,15Z,18Z,21Z)-3-oxotetracosahexaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z)-3-oxotetracosapentaenoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

3-oxododecanoyl-CoA

3-oxohexanoyl-CoA

3-oxodecanoyl-CoA

3-oxooctanoyl-CoA

3-oxooctadecanoyl-CoA

3-oxo-palmitoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

allantoate

acetamide

(S)-(+)-allantoin

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

(2Z,4E,7E)-2-hydroxy-6-oxonona-2,4,7-triene-1,9-dioate

(3E)-2-oxohex-3-enedioate

chorismate

succinate

fumarate

L-aspartate

(S)-malate

α,ω-9Z-octadecenedioate

D-glucarate

D-galactarate

3-(carbamoylamino)-2-methylpropanoate

(2R,3S)-2-methylisocitrate

3-carboxy-cis,cis-muconate

(1E)-4-oxobut-1-ene-1,2,4-tricarboxylate

2-hydroxy-4-oxobutane-1,2,4-tricarboxylate

(1E,3E)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

(2S,3S)-2-methylcitrate

cis-2-methylaconitate

trans-aconitate

cis-aconitate

D-threo-isocitrate

3-oxoadipate

pyruvate

acetate

formate

propanoate

(R)-lactate

decanoate

octanoate

laurate

7-hydroxylaurate

gentisate

4-hydroxybutanoate

(R)-3-hydroxybutanoate

18-hydroxyoleate

18-hydroxystearate

16-hydroxypalmitate

(15Z)-tetracosenoate

(9Z,15Z)-12,13-epoxy-octadeca-9,15-dienoate

(12Z,15Z)-9,10-epoxyoctadeca-12,15-dienoate

(9Z,12Z)-15,16-epoxyoctadeca-9,12-dienoate

(9Z,15Z)-12,13-dihydroxyoctadeca-9,15-dienoate

(12Z,15Z)-9,10-dihydroxyoctadeca-12,15-dienoate

(9Z,12Z)-15,16-dihydroxyoctadeca-9,12-dienoate

8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-enyl}cyclopentyl]octanoate

dinor-12-oxo-phytodienoate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

myristate

arachidate

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoate

α-linolenate

linoleate

stearate

palmitate

oleate

di-homo-γ-linolenate

phytenate

(R)-pantoate

orotate

D-gluconate

(S)-1-pyrroline-5-carboxylate

L-α-amino-ε-keto-pimelate

L-kynurenine

L-2-aminoadipate

carbamate

L-serine

creatine

N-carbamoylsarcosine

β-alanine

(R)-3-amino-2-methylpropanoate

(S)-3-amino-2-methylpropanoate

L-proline

glycine

L-leucine

L-alanine

L-glutamine

D-glutamate

L-glutamate

L-lysine

L-histidine

L-arginine

L-tyrosine

L-tryptophan

L-phenylalanine

D-aspartate

D-alanine

L-saccharopine

seleno-L-homocysteine

L-aspartyl-4-phosphate

3-phospho-L-serine

sarcosine

N-carbamoyl-L-aspartate

N-carbamoylglycine

formyl-L-isoglutamine

N-formyl-L-glutamate

N-formimino-L-glutamate

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-acetyl-L-methionine

N-acetyl-L-glutamate

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L-methionine

L-cysteine

L-isoglutamine

L-asparagine

L,L-diaminopimelate

L-isoleucine

L-valine

L-cystathionine

L-threonine

L-ornithine

L-citrulline

O-succinyl-L-homoserine

L-canaline

L-glutamate-5-semialdehyde

S-adenosyl-L-homocysteine

hypoglycin A

1-aminocyclopropane-1-carboxylate

L-homoserine

L-aspartate 4-semialdehyde

O-phospho-L-homoserine

S-adenosyl-L-methionine

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

4-(methylsulfanyl)-2-oxobutanoate

2-oxoglutarate

glyoxylate

2-oxobutanoate

hypoglycin B

glycerophosphoserine

glycerophosphoglycerol

sn-glycero-3-phosphoethanolamine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

glycerol

D-arabinitol

D-sorbitol

L-iditol

propan-1-ol

butan-1-ol

ethanol

methanol

phytol

1-dodecanol

1-octanol

3,5-cyclohexadiene-1,2-diol-1-carboxylate

myo-inositol

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

trehalose-cis-methoxy-mono-mycolate

6-O-trans-keto-mycolyl-trehalose 6-phosphate

trehalose-trans-keto-mono-mycolate

6-O-α-mycolyl-trehalose 6-phosphate

α, α'-trehalose 6-α-mycolate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

trehalose-cis-keto-mono-mycolate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

trehalose-trans-methoxy-mono-mycolate

trans,octacis-decaprenyl phosphate

torulene

apo-4'-lycopenal

all-trans-3,4-didehydrolycopene

4'-apo-β-carotenal

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-heptaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-octaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-oleoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

α-Kdo-(2→6)-lipid IV_A

(S)-nicotine

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

1-(β-D ribofuranosyl)nicotinamide

maltotriose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

α,α-trehalose

β-D-fructofuranose

keto-L-sorbose

keto-D-fructose

D-xylulose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

L-glyceraldehyde

D-glyceraldehyde

glycolaldehyde

β-D-galactopyranose

α-D-galactopyranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

α,α-trehalose 6-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

UDP-α-D-glucose

dTDP-α-D-glucose

ADP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactofuranose

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

GDP-α-D-mannose

GDP-4-dehydro-α-D-rhamnose

GDP-β-L-fucose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-arabinofuranose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

L-idonate

D-galactonate

L-gulonate

diacetyl

methylglyoxal

3-(N-morpholino)propanal

1-octanal

1-propanal

formaldehyde

isobutanal

acetaldehyde

butan-1-al

phytenal

hydantoin

cytosine

uracil

dTMP

dCTP

dUDP

dTDP

dTTP

CTP

dUTP

dUMP

UDP

CDP

dCMP

dCDP

5,6-dihydrothymine

5,6-dihydrouracil

UTP

5-fluorouracil

UMP

CMP

cytidine

uridine

2'-deoxycytidine

2'-deoxyuridine

thymidine

thymine

guanine

hypoxanthine

adenine

isoguanine

preQ₁

xanthosine

guanosine

inosine

adenosine

2'-deoxyguanosine

2'-deoxyadenosine

2'-deoxyinosine

GTP

ITP

ATP

GDP

IDP

ADP

IMP

XMP

GMP

AMP

dITP

dGTP

dATP

dIDP

dGDP

dADP

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydropterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

6-carboxy-5,6,7,8-tetrahydropterin

(6R)-4a-hydroxy-tetrahydrobiopterin

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

2-hydroxychromene-2-carboxylate

8-oxo-GTP

8-oxo-GMP

pppGpp

8-oxo-dGTP

8-oxo-dGMP

ppGpp

cyclic-GMP

cyclic-AMP

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

5'-deoxyadenosine

adenylo-succinate

5-fluorocytosine

cyclic di-3',5'-guanylate

5-hydroxy-CTP

2-hydroxy-dATP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA