an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

poly(ribitol phosphate)

carbamoyl phosphate

CDP-glycerol

3,5-dihydro-4H-imidazol-4-one

H₂

4-oxaloisocrotonate

3-methylbutanol

(S)-2,3-dihydrodipicolinate

O-ureido-L-homoserine

S-ribosyl-L-homocysteine

S-methyl-5'-thioadenosine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

(2E,4Z)-2-hydroxymuconate

nicotinate adenine dinucleotide

citrate

indole-3-ketol

indole-3-glycol aldehyde

glycerone phosphate

2-keto-D-gluconate

hydrogen peroxide

isobutanol

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

ManNAc-GlcNAc-PP-undecaprenol

H₂O

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-(methylsulfanyl)-α-D-ribose

1,4-dihydroxy-2-naphthoate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(R)-mevalonate diphosphate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

N-acetyl-D-muramate 6-phosphate

5-aminoimidazole-4-carboxylate

4-aminobutanoate

D-gluconate 6-phosphate

4'-phosphopantetheine

2-methylbutanal

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

α-D-glucosamine 1-phosphate

6-phospho D-glucono-1,5-lactone

isopentenyl diphosphate

(R)-mevalonate

5-hydroxyindole acetaldehyde

(R)-4'-phosphopantothenate

quinolinate

(R)-5-phosphomevalonate

5-enolpyruvoyl-shikimate 3-phosphate

D-erythro-imidazole-glycerol-phosphate

propanoyl phosphate

2-dehydro-3-deoxy-D-galactonate

1,6-anhydro-N-acetyl-β-muramate

furfuryl alcohol

4-oxalocrotonate

prenyl diphosphate

2-dehydro-3-deoxy-D-gluconate

N-acetyl-D-galactosamine 6-phosphate

CO₂

5-amino-6-(5-phospho-D-ribosylamino)uracil

L-histidinol phosphate

3-dehydroshikimate

2-phenylethanol

oxalosuccinate

indole-3-glyoxal

O-D-alanyl-poly(ribitol phosphate)

5-amino-6-(D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribitylamino)uracil

thiamine diphosphate

succinate semialdehyde

imidazole acetol-phosphate

shikimate

3-methyl-2-oxobutanoate

oxaloacetate

β-nicotinate D-ribonucleotide

2-methylbutanol

hydroxypyruvate

2-dehydropantoate

1-deoxy-L-glycero-tetrulose 4-phosphate

phosphoenolpyruvate

nigerose

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2-dehydro-3-deoxy-D-gluconate 6-phosphate

L-selenocystathionine

2,5-didehydro-D-gluconate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

histidinal

autoinducer 2

2-(α-D-galactosyl)-sn-glycerol 3-phosphate

(R)-pantothenate

xanthine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

acetyl phosphate

3-sulfinopyruvate

acetoacetate

5-hydroxytryptophol

3-methylbutanal

(R)-4'-phosphopantothenoyl-L-cysteine

N-succinyl-L,L-2,6-diaminopimelate

3-methoxy-4-hydroxyphenylglycolaldehyde

ammonia

3-dehydroquinate

5-hydroxyindole thiazolidine carboxylate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

shikimate 3-phosphate

histidinol

D-galactosamine-6-phosphate

2-dehydro-3-deoxy-D-galactonate 6-phosphate

5-phospho-β-D-ribosylamine

4-aminoimidazole

indole-3-glycol

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

5-ureidoimidazole-4-carboxylate

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

(2E,6E)-farnesyl diphosphate

geranyl diphosphate

sulfite

OH^-

hydrogensulfite

superoxide

hydrogencarbonate

phosphonate

phosphate

diphosphate

Fe³⁺

Na⁺

ammonium

H⁺

Cd²⁺

Fe²⁺

Mn²⁺

Cu²⁺

Co²⁺

Mg²⁺

Zn²⁺

trimethyl sulfonium

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

acetyl-CoA

3'-dephospho-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(3S)-citryl-CoA

succinyl-CoA

(S)-malyl-CoA

butanoyl-CoA

acetoacetyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

crotonyl-CoA

oxygen

2-iminosuccinate

riboflavin

thiamine

nicotinate

nicotinamide

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

hemin

protoheme

protoporphyrin IX

putrescine

spermidine

glycine betaine

betaine aldehyde

choline

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

D-alanyl-D-alanine

dGMP

8-oxo-GTP

dIMP

dAMP

XTP

GDP

IMP

dITP

pppGpp

1-(5-phospho-β-D-ribosyl)-AMP

dGDP

AMP

adenylo-succinate

2'-deoxyguanosine

GMP

cyclic-AMP

ATP

hypoxanthine

dGTP

ADP

ITP

dADP

XMP

8-oxo-dGTP

2'-deoxyadenosine

dATP

ppGpp

1-(5-phospho-β-D-ribosyl)-ATP

GTP

adenine

purine

guanine

cytosine

uracil

β-nicotinamide D-ribonucleotide

UMP

CMP

CTP

UTP

UDP

CDP

dTTP

dCTP

dUTP

dCDP

dTDP

dUDP

dCMP

dUMP

dTMP

NADP⁺

NAD⁺

NADPH

NADH

ADP-D-ribose

2'-deoxycytidine

2'-deoxyuridine

thymidine

xanthosine

inosine

guanosine

adenosine

cytidine

uridine

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-D-galactose

UDP-N,N'-diacetylbacillosamine

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

GDP-α-D-mannose

Gro-P-ManNAc-GlcNAc-PP-undecaprenol

L-histidine

L-phenylalanine

L-tyrosine

L-glutamate

L-aspartate

L-lysine

L-arginine

L-threonine

glycine

L-asparagine

L-serine

L-glutamine

L-cysteine

seleno-L-homocysteine

N-formimino-glycine

L-citrulline

L-leucine

L-valine

L-homocysteine

L-ornithine

S-adenosyl-L-homocysteine

L-cystine

S-adenosyl-L-methionine

L-homoserine

L-canaline

L-aspartate 4-semialdehyde

3-sulfino-L-alanine

O-succinyl-L-homoserine

meso-diaminopimelate

L-proline

L-methionine

L-alanine

D-glutamate

β-alanine

L-cystathionine

L,L-diaminopimelate

D-alanine

D-aspartate

pyruvate

2-oxoglutarate

2-oxobutanoate

glyoxylate

protocatechuate

(1E,3E)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate

(S)-lactate

(R)-glycerate

(R)-lactate

13-[O(2')-β-D-glucopyranosyl-β-D-glucopyranosyloxy]docosanoate O(6'')-acetate

13-sophorosyloxydocosanoate 6',6''-diacetate

(1E)-4-oxobut-1-ene-1,2,4-tricarboxylate

2-hydroxy-4-oxobutane-1,2,4-tricarboxylate

3-phenyl-2-oxopropanoate

propanoate

formate

acetate

butanoate

chorismate

(3E)-2-oxohex-3-enedioate

succinate

fumarate

(S)-malate

3-carboxy-cis,cis-muconate

cis-aconitate

D-threo-isocitrate

D-mannonate

(R)-pantoate

3-oxoadipate

methionol

dimethyl sulfide

3-(methylsulfanyl)propanal

L-cysteate

3-sulfopyruvate

sn-glycerol 3-phosphate

hydroxyl radical

D-galactonate

N,N'-diacetyl-α-D-bacillosaminyl-diphospho-tri-trans,hepta-cis-undecaprenol

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

sucrose 6^F-phosphate

β-D-cellobiose 6'-phosphate

α,α-trehalose 6-phosphate

α-lactose 6'-phosphate

α-maltose 6'-phosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-tagatofuranose 1,6-bisphosphate

D-tagatofuranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-galactose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

α-D-galactose 1-phosphate

L-fuculose 1-phosphate

β-L-galactose 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-α-D-galactosamine 1-phosphate

α-D-ribose-1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

galactinol

D-galactosylononitol

DIMBOA-β-D-glucoside

a peptidoglycan dimer (mycobacteria)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

a peptidoglycan dimer (meso-diaminopimelate containing)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

α-D-xylopyranose

β-D-ribofuranose

β-D-ribopyranose

D-glyceraldehyde

β-D-glucopyranose

α-D-glucopyranose

β-D-galactopyranose

α-D-galactopyranose

β-L-galactopyranose

L-fuculose

β-D-fructofuranose

N-acetyl-β-D-mannosamine

N-acetyl-α-D-galactosamine

N-acetyl-β-D-glucosamine

glycerol

D-mannitol 1-phosphate

D-mannitol

raffinose

melibiose

lactose

sucrose

α,α-trehalose

β-D-cellobiose

β-isomaltose

6,6-kestotetraose

6-kestotriose

6_G-kestotriose

1,6-kestotetraose

1,1-kestotetraose

1-kestotriose

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

propan-1-ol

ethanol

butan-1-ol

myo-inositol

D-ononitol

coenzyme A

N-acetyl-D-mannosamine 6-phosphate

FMN

FAD

demethylmenaquinol-8

(S)-NADHX

(R)-NADHX

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

1-propanal

butan-1-al

acetaldehyde

isobutanal

formaldehyde

(S)-lactaldehyde

5,10-methenyltetrahydrofolate mono-L-glutamate

urate

4-tyrosol

6,8-dihydroxypurine

8-hydroxypurine

3-methoxy-4-hydroxyphenylglycol

DIMBOA

6,7-dimethyl-8-(1-D-ribityl)lumazine

7,8-dihydropteroate

furfural