an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

L-Ala-γ-D-Glu

dethiobiotin

N-ethylmaleimide

4-guanidinobutanoate

L-tartrate

(R)-4'-phosphopantothenoyl-L-cysteine

glutathione disulfide

carbon monoxide

3,5-didehydroshikimate

1,4-dihydroxy-2-naphthoyl-CoA

acrylamide

1-deoxy-L-glycero-tetrulose 4-phosphate

acetyl phosphate

5-enolpyruvoyl-shikimate 3-phosphate

α-D-glucosamine 1-phosphate

3-amino-1-hydroxyacetone 1-phosphate

urocanate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

(4S)-4-hydroxy-2-oxoheptanedioate

N-ethylsuccinimide

S-ribosyl-L-homocysteine

histidinal

L-histidinol phosphate

acrylate

pimeloyl-CoA

3-deoxy-D-arabino-heptulosonate 7-phosphate

(S)-dihydroorotate

formamide

carbonic acid

2-iminoacetate

ethyl-(2R)-methyl-(3S)-hydroxybutanoate

4-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

S-methyl-5'-thioadenosine

3-maleylpyruvate

N-(5-phosphoribosyl)-anthranilate

(salicyl)adenylate

ammonia

S-acetyldihydrolipoamide

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

N¹-(5-phospho-β-D-ribosyl)glycinamide

(E)-3-(methoxycarbonyl)pent-2-enedioate

H₂

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

cis,cis-muconate

5-aminolevulinate

N-acetylglutamyl-phosphate

N-carbamoylputrescine

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

(S)-2,3-dihydrodipicolinate

4-aminobutanoate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

S-methyl-5-thio-α-D-ribose 1-phosphate

3-oxo-5,6-didehydrosuberyl-CoA

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

propanoyl phosphate

N-acetyl-L-glutamate 5-semialdehyde

3'-phosphoadenylyl-sulfate

canavaninosuccinate

porphobilinogen

3-deoxy-D-manno-octulosonate 8-phosphate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

D-glycero-β-D-manno-heptose 1-phosphate

5-dehydro-D-gluconate

(S)-2-acetolactate

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

N²-succinyl-L-arginine

2-hydroxy-3-oxosuccinate

(2R,3S)-3-isopropylmalate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-6-(D-ribitylamino)uracil

lipid X

autoinducer 2

(2S)-2-isopropylmalate

4-imidazolone-5-propanoate

2-dehydro-3-deoxy-D-gluconate

5-phospho-β-D-ribosylamine

lipoamide

orotidine 5'-phosphate

coproporphyrinogen III

shikimate

N-succinyl-2-amino-6-ketopimelate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

adenosine 3',5'-bisphosphate

2,5-didehydro-D-gluconate

prephenate

(lipoyl)adenylate

N-acetyl-D-muramate 6-phosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

L-arginino-succinate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

6-phospho D-glucono-1,5-lactone

dihydroxyacetone

ethyl-2-methylacetoacetate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

2-succinylbenzoate

shikimate 3-phosphate

7,8-diaminopelargonate

xanthine

5-amino-6-(5-phospho-D-ribitylamino)uracil

D-gluconate 6-phosphate

N²-succinyl-L-glutamate 5-semialdehyde

3-dehydroquinate

5-(methylsulfanyl)-ribulose 1-phosphate

5-amino-6-(5-phospho-D-ribosylamino)uracil

2-deoxy-D-glucose 6-phosphate

8-amino-7-oxononanoate

2-deoxy-D-glucose

(S)-ureidoglycolate

UDP-4-deoxy-4-formamido-β-L-arabinopyranose

prenyl diphosphate

2-dehydropantoate

1,6-anhydro-N-acetyl-β-muramate

N-succinyl-L,L-2,6-diaminopimelate

AP site on DNA created by glycosylase in repair process

N-acetyl-β-D-mannosaminuronyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol

3-dehydro-2-deoxy-D-gluconate

2-hydroxy-5-carboxymethylmuconate semialdehyde

adenosine 5'-phosphosulfate

2-keto-L-gulonate

2-maleylacetate

γ-L-glutamyl 5-phosphate

anthranilate

(R)-2,3-dihydroxy-3-methylpentanoate

imidazole acetol-phosphate

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

O-acetyl-L-serine

D-galactosamine-6-phosphate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

phosphoenolpyruvate

carbamoyl phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

β-nicotinate D-ribonucleotide

pimelate

O-ureido-L-homoserine

D-erythro-imidazole-glycerol-phosphate

thiamine phosphate

succinate semialdehyde

2,3-didehydroadipyl-CoA

D-glycero-β-D-manno-heptose 1,7-bisphosphate

2-isopropylmaleate

3-dehydroshikimate

3-keto-β-D-galactose

selenophosphate

4-amino-4-deoxy-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

histidinol

glycerone phosphate

5-oxo-L-proline

isochorismate

3-amino-3-deoxy-D-fructose 6-phosphate

(R)-4'-phosphopantothenate

CO₂

urea

L-canavanine

4-amino-4-deoxychorismate

N²acetyl-L-2-aminoadipate 6-phosphate

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

(S)-3-methyl-2-oxopentanoate

(enterobacterial common antigen)-undecaprenyl diphosphate

4'-phosphopantetheine

thiamine diphosphate

ADP-D-glycero-β-D-manno-heptose

(S)-4-amino-5-oxopentanoate

N²-succinyl-L-ornithine

hydrogen peroxide

isopentenyl diphosphate

N²-succinylglutamate

lipid IV_A

glycolate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

3-demethylubiquinol-6

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

N²-acetyl-L-2-aminoadipate semialdehyde

1-deoxy-1-imino-D-erythrose 4-phosphate

S-adenosyl 3-(methylsulfanyl)propylamine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-aminoacetaldehyde

GMP-N-ε-(N-α-acetyl lysine methyl ester) 5'-phosphoramidate

4-guanidinobutyramide

N,N-dimethyl-1,4-phenylenediamine

3-phosphooxypyruvate

3-deoxy-α-D-manno-2-octulosonate

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

3-hydroxypropanoate

(1S,4S)-2,5-dichloro-2,5-cyclohexadiene-1,4-diol

1,4-dihydroxy-2-naphthoate

D-mannopyranosyl-1-phosphoheptaprenol

3-oxopropanoate

gallate

H₂O

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

N-acetyl-D-galactosamine 6-phosphate

quinolinate

core oligosaccharide-lipid A (E. coli K-12 core type)

(2S)-2-isopropyl-3-oxosuccinate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

hydrogen selenide

(indol-3-yl)acetamide

ADP-L-glycero-β-D-manno-heptose

2-phosphoglycolate

4-phosphooxy-L-threonine

(L-cysteinyl)adenylate

2-deoxygluconate

5-carboxymethyl-2-hydroxymuconate

muconolactone

4-deoxy-4-formamido-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

nicotinate adenine dinucleotide

α-D-ribose 1,5-bisphosphate

dihydrolipoamide

(R)-pantothenate

3-(4-hydroxyphenyl)-3-oxo-propionyl-CoA

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

2-C-methyl-D-erythritol 4-phosphate

lipid A disaccharide (E. coli)

preuroporphyrinogen

butanoyl phosphate

(S)-2,3,4,5-tetrahydrodipicolinate

(indol-3-yl)pyruvate

2-keto-D-gluconate

(S)-2-aceto-2-hydroxybutanoate

oxaloacetate

4-amino-2-methyl-5-pyrimidinemethanol

(E)-2-benzylidenesuccinyl-CoA

3-deoxy-D-glycero-2,5-hexodiulosonate

citrate

oxalosuccinate

N-acetyl-D-mannosamine 6-phosphate

L-homocysteine

4-methylphenol

(S)-methylmalonate-semialdehyde

allantoate

nicotinamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

(S)-(+)-allantoin

(2E,6E)-farnesyl diphosphate

hemin

cob(I)inamide

cob(I)alamin

adenosylcobalamin

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobinamide

cob(I)yrinate a,c-diamide

protoheme

3-(all-trans-octaprenyl)benzene-1,2-diol

4-dimethylaminophenylazobenzene

5-chloro-5-deoxyribose 1-phosphate

5-chloro-5-deoxy-D-ribonate

5'-chloro-5'-deoxyadenosine

5-chloro-4-hydroxy-2-oxopentanoate

(+)-5-chloromuconolactone

2,5-dichloro-p-quinol

2-chloro-cis,cis-muconate

3-chlorocatechol

5'-deoxy-5'-fluoroadenosine

4-fluorothreonine

5-fluoro-5-deoxy-D-ribulose 1-phosphate

fluoroacetate

fluoroacetaldehyde

5-fluoro-5-deoxy-D-ribose 1-phosphate

Fe³⁺

Fe²⁺

Zn²⁺

Mg²⁺

Cu²⁺

Mo²⁺

ammonium

H⁺

K⁺

nitrate

superoxide

hydrogencarbonate

thiosulfate

molybdate

sulfate

nitrite

sulfite

phosphonate

phosphate

triphosphate

diphosphate

chloride

fluoride

D-mannonate

D-gluconate

D-altronate

L-idonate

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

3'-ketolactose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

UDP-D-galactose

DIMBOA-β-D-glucoside

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

4-phospho-D-erythronate

5-phospho-α-D-ribose 1-diphosphate

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

L-xylulose 5-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

β-D-fructose 1,6-bisphosphate

L-ascorbate 6-phosphate

D-tagatofuranose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

erythrulose 1-phosphate

L-rhamnulose 1-phosphate

α-D-galactose 1-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (S. aureus)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-ribulose-1,5-bisphosphate

CMP-3-deoxy-β-D-manno-octulosonate

CDP-α-D-glucose

dTDP-α-D-glucose

ADP-α-D-glucose

GDP-α-D-mannose

dTDP-4-acetamido-4,6-dideoxy-α-D-galactose

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-4-amino-4-deoxy-β-L-arabinopyranose

UDP-β-L-threo-pentapyranos-4-ulose

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-α-D-xylose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

CDP-4-dehydro-3,6-dideoxy-α-D-glucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

CDP-4-dehydro-6-deoxy-α-D-glucose

ADP-D-ribose

N,N'-diacetylchitobiose 6'-phosphate

β-D-cellobiose 6'-phosphate

α,α-trehalose 6-phosphate

α-maltose 6'-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

glycerol

xylitol

D-mannitol

D-mannitol 1-phosphate

β-D-fructofuranose

N-acetyl-α-D-glucosamine

N-acetyl-β-D-glucosamine

N-acetyl-β-D-mannosamine

α-D-xylopyranose

L-ribulose

D-xylulose

β-D-glucopyranose

α-D-glucopyranose

α-D-galactopyranose

β-D-galactopyranose

D-glyceraldehyde

glycolaldehyde

maltotetraose

maltoheptaose

maltohexaose

maltotriose

cellotetraose

4-(4-deoxy-α-D-galact-4-enuronosyl)-D-galacturonate

lactose

melibiose

sucrose

α,α-trehalose

β-D-cellobiose

XLXG xyloglucan oligosaccharide

XXXG xyloglucan oligosaccharide

XLLG xyloglucan oligosaccharide

XXLG xyloglucan oligosaccharide

raffinose

glucosyl-(heptosyl)₂-Kdo₂-lipid A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

(heptosyl)₂-Kdo₂-lipid A

heptosyl-Kdo₂-lipid A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

galactosyl-(glucosyl)₃-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

α-Kdo-(2→6)-lipid IV_A

galactosyl-glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₂-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-phosphate

4'-α-L-Ara4N-α-Kdo-(2→4)-α-Kdo-(2→6)-[P4'-α-L-ara4N]-lipid A

(indol-3-yl)acetate

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

geranyl diphosphate

all-trans-octaprenyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-octaprenyl-4-hydroxybenzoate

trehalose-cis-keto-mono-mycolate

6-O-mycolyl-β-D-mannopyranosyl-1-phosphoheptaprenol

trehalose-trans-methoxy-mono-mycolate

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

6-O-cis-methoxy-mycolyl-β-D-mannopyranosyl-1-phosphoheptaprenol

α, α'-trehalose 6-α-mycolate

trehalose-cis-methoxy-mono-mycolate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

6-O-trans-methoxy-mycolyl-β-D-mannopyranosyl-1-phosphoheptaprenol

trehalose-trans-keto-mono-mycolate

6-O-trans-keto-mycolyl-β-D-mannopyranosyl-1-phosphoheptaprenol

6-O-cis-keto-mycolyl-β-D-mannopyranosyl-1-phosphoheptaprenol

6-O-trans-keto-mycolyl-trehalose 6-phosphate

6-O-α-mycolyl-trehalose 6-phosphate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

(S)-1-pyrroline-5-carboxylate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

6,7-dimethyl-8-(1-D-ribityl)lumazine

FADH₂

FMNH₂

FAD

riboflavin

FMN

cyclic pyranopterin phosphate

7,8-dihydroneopterin 3'-triphosphate

molybdopterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydromonapterin

7,8-dihydroneopterin

7,8-dihydroneopterin 3'-phosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

molybdopterin adenine dinucleotide

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

adenine

guanine

2'-deoxyinosine

2'-deoxyadenosine

2'-deoxyguanosine

guanosine

inosine

adenosine

xanthosine

GMP

IMP

XMP

AMP

ADP

GDP

ATP

GTP

dGTP

dATP

dGDP

dADP

dAMP

dGMP

hypoxanthine

cytosine

uracil

preQ₁

UDP

dCDP

dTTP

dTMP

dCMP

dCTP

dUDP

CTP

dUTP

CDP

orotate

dTDP

dUMP

UTP

CMP

UMP

thymidine

2'-deoxycytidine

2'-deoxyuridine

uridine

cytidine

sirohydrochlorin

precorrin-2

precorrin-1

coenzyme A

(R)-lipoate

5,10-methenyltetrahydrofolate mono-L-glutamate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

4-(methylsulfanyl)-2-oxobutanoate

2-oxobutanoate

pyruvate

2-oxoglutarate

glyoxylate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

(R)-pantoate

acetate

gentisate

D-tagaturonate

chorismate

L-aspartate

succinate

fumarate

(S)-malate

trans-aconitate

cis-aconitate

D-threo-isocitrate

3-oxoadipate

L-histidine

L-arginine

L-lysine

L-glutamate

L-threonine

glycine

L-glutamine

L-tyrosine

L-serine

L-cysteine

L-asparagine

L-methionine

L-alanine

L-phenylalanine

L-selenocysteine

L-isoleucine

L-tryptophan

L-proline

L-leucine

L-valine

D-glutamate

L,L-diaminopimelate

L-aspartyl-4-phosphate

L-ornithine

L-cystathionine

N⁶-acetyl-N⁶-hydroxy-L-lysine

N-formyl-L-glutamate

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-formimino-L-glutamate

N-methyl-L-tryptophan

N-carbamoyl-L-aspartate

D-cysteine

D-alanine

L-2-amino-3-oxobutanoate

3-phospho-L-serine

erythro-4-hydroxy-L-glutamate

N⁶-hydroxy-L-lysine

N-α-acetyl lysine methyl ester

N-acetyl-L-glutamate

L-citrulline

S-adenosyl-L-methionine

S-sulfo-L-cysteine

3-sulfino-L-alanine

O-succinyl-L-homoserine

L-aspartate 4-semialdehyde

L-cystine

L-canaline

O-phospho-L-homoserine

L-glutamate-5-semialdehyde

L-homoserine

S-adenosyl-L-homocysteine

meso-diaminopimelate

β-alanine

(S)-3-amino-2-methylpropanoate

salicylate

4-aminobenzoate

formate

propanoate

(R)-lactate

butanoate

octanoate

stearate

palmitate

dihydrosterculate

(3E,5Z)-tetradecadienoate

linoleate

oleate

acryloyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

methylacrylyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

isobutanoyl-CoA

3'-dephospho-CoA

salicyl-CoA

(2E,5Z)-tetradecenoyl-CoA

(E)-glutaconyl-CoA

linoleoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

acetyl-CoA

glutaryl-CoA

malonyl-CoA methyl ester

succinyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

4-hydroxybenzoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

gentisyl-CoA

(+)-7-epi-jasmonoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

malonyl-CoA

(3Z)-dodec-3-enoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

oleoyl-CoA

2-carboxy-cerotoyl-CoA

cerotoyl-CoA

stearoyl-CoA

palmitoyl-CoA

octanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

acetoacetyl-CoA

3-oxooctadecanoyl-CoA

butanoyl-CoA

propanoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-dodec-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

crotonyl-CoA

(2E)-octadec-2-enoyl-CoA

D-glucono-1,5-lactone

cis-dienelactone

trans-dienelactone

ethanol

3,4-dihydroxyphenylacetate

catechol

myo-inositol

1D-myo-inositol 3-monophosphate

1D-myo-inositol 1-monophosphate

glycine betaine

ubiquinol-6

ubiquinol-7

ubiquinol-9

ubiquinol-8

ubiquinol-10

3-demethylubiquinol-8

3-demethylubiquinol-10

3-demethylubiquinol-7

3-demethylubiquinol-9

demethylmenaquinol-8

ubiquinone-8

NADPH

NADH

NAD⁺

NADP⁺

5'-deoxyadenosine

pppGpp

adenylo-succinate

cyclic-AMP

1-(5-phospho-β-D-ribosyl)-AMP

ppGpp

1-(5-phospho-β-D-ribosyl)-ATP

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

β-nicotinamide D-ribonucleotide

reduced β-nicotinamide D-ribonucleotide

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

(S)-lactaldehyde

methylglyoxal

acetaldehyde

formaldehyde

menadione

diacetyl

(R)-acetoin

(S)-acetoin

nicotinate

thiamine

L-ascorbate

pyridoxal

pyridoxamine 5'-phosphate

pyridoxamine

pyridoxine

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

acrylonitrile

preQ₀

hydrogen cyanide

4-methyl-5-(2-phosphooxyethyl)thiazole

5-(2-hydroxyethyl)-4-methylthiazole

glutathione

thiocyanate

(R)-S-lactoylglutathione

taurine

dTDP-4-amino-4,6-dideoxy-α-D-galactose

sn-glycerol 3-phosphate

2-octaprenylphenol

2-iminosuccinate

(S)-ureidoglycine

AP site removed from DNA

aniline

agmatine

spermine

spermidine

putrescine

N¹-acetylspermidine

hydrogen sulfide

oxygen

ammonium hydroxide

protoporphyrin IX

uroporphyrinogen-I

uroporphyrinogen-III

protoporphyrinogen IX

coproporphyrinogen I

siroheme

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-cysteinylglycine

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

2-methoxy-6-(all-trans-octaprenyl)phenol

urate

4-hydroxybenzoate

menadiol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

indole

DIMBOA

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

nitric oxide

(S)-3-hydroxy-isobutanoate

aerobactin

yersiniabactin

betanidin quinone

betanidin