an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

glycolate

H₂O

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate

3-dehydroshikimate

shikimate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

CO₂

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

4-methyl-3-oxoadipate

4-imidazoleacetate

imidazole acetaldehyde

5-hydroxyindole acetate

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

3,4-dihydroxyphenylacetaldehyde

propynoate

prop-2-ynal

D-glucurono-6,3-lactone

4-acetamidobutanoate

4-acetamidobutanal

dimethylsulfoniopropanoate

4-aminobutanoate

6-aminohexanoate

6-aminohexanoate linear dimer

5-carboxymethyl-2-hydroxymuconate

2-hydroxy-5-carboxymethylmuconate semialdehyde

oxaloacetate

enol-phenylpyruvate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

thiamine diphosphate

2-(α-hydroxyethyl)thiamine diphosphate

S-acetyldihydrolipoamide

dihydrolipoamide

phosphoenolpyruvate

2-O-(6-phospho-α-D-mannosyl)-D-glycerate

2-amino-2-deoxy-D-gluconate 6-phosphate

glycerone phosphate

dihydroxyacetone

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

N-acetyl-D-muramate 6-phosphate

hydrogen peroxide

urea

salicyl alcohol

methylsalicylate

2,5-didehydro-D-gluconate

2-keto-D-gluconate

5-hydroxytryptophol

indole-3-glycol aldehyde

indole-3-glycol

isobutanol

3-methylbutanal

3-methylbutanol

2-methylbutanal

2-methylbutanol

2-phenylethanol

urocanate

4-amino-4-deoxychorismate

4-guanidinobutanoate

4-guanidinobutyramide

acrylate

acrylamide

(indol-3-yl)acetamide

propionamide

N-(5-phosphoribosyl)-anthranilate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-phospho-β-D-ribosylamine

tartronate semialdehyde

ethylamine

N-isopropylammelide

hydroxyatrazine

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

3-dehydroquinate

2,5-dioxopentanoate

5-dehydro-4-deoxy-D-glucarate

3-deoxy-D-arabino-heptulosonate 7-phosphate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

2-succinylbenzoate

1,4-dihydroxy-2-naphthoyl-CoA

succinate semialdehyde

isopentenyl diphosphate

3'-phosphoadenylyl-sulfate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

3-oxopropanoate

2-aminoacetaldehyde

4-methylumbelliferyl glucoside

4-hydroxybenzaldehyde

scopolin

cis-coumarinic acid-β-D-glucoside

(R)-4'-phosphopantothenate

(R)-pantothenate

3-keto-β-D-galactose

N-succinyl-2-amino-6-ketopimelate

N-succinyl-L,L-2,6-diaminopimelate

citrate

thiamine phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

methylamine

N-ethylglycine

2-iminoacetate

coproporphyrinogen III

preuroporphyrinogen

porphobilinogen

5-aminolevulinate

(S)-4-amino-5-oxopentanoate

shikimate 3-phosphate

prephenate

5-enolpyruvoyl-shikimate 3-phosphate

quinolinate

β-nicotinate D-ribonucleotide

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

3-phosphooxypyruvate

2-oxovalerate

3-ethylmalate

4-methyl-2-oxopentanoate

(2S)-2-isopropyl-3-oxosuccinate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(2S)-2-isopropylmalate

4'-phosphopantetheine

6-phospho D-glucono-1,5-lactone

5-dehydro-D-gluconate

D-gluconate 6-phosphate

O-acetyl-L-serine

hydrogen selenide

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

γ-L-glutamyl 5-phosphate

nicotinate adenine dinucleotide

S-formylmycothiol

S-(hydroxymethyl)mycothiol

carbamoyl phosphate

(S)-dihydroorotate

orotidine 5'-phosphate

anthranilate

(E)-3-(methoxycarbonyl)pent-2-enedioate

N-Formyl-L-kynurenine

indole-3-ethanol

glutathione disulfide

aminoacetone

acetyl phosphate

5-amino-6-(D-ribitylamino)uracil

2-dehydropantoate

histidinol

histidinal

L-arginino-succinate

L-canavanine

canavaninosuccinate

O-ureido-L-homoserine

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

L-histidinol phosphate

prenyl diphosphate

pseudouridine 5'-phosphate

xanthine

streptomycin 6-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol 4-phosphate

4-imidazolone-5-propanoate

oxalosuccinate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5-methylcytosine

dethiobiotin

7,8-diaminopelargonate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

8-amino-7-oxononanoate

pimeloyl-CoA

4-phosphooxy-L-threonine

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

L-gulono-1,4-lactone

(E)-4-coumaroyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

2,3-didehydroadipyl-CoA

formamide

acetoacetate

ethanolamine

3-maleylpyruvate

urea-1-carboxylate

luteolin 7-O-β-D-diglucuronide

luteolin 7-O-[β-D-glucosyluronate-(1,2)-β-D-glucosiduronate]-4'-O-β-D-glucosiduronate

luteolin 7-O-β-D-glucuronide

(R)-mandelate

(S)-mandelate

isopropylamine

(1R,2R)-1,2-diphenylethane-1,2-diol

cis-stilbene oxide

creatinine

butyramide

nigerose

2-oleoylglycerol

(2-hydroxyphenyl)acetate

homogentisate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

(4Z)-2-oxohept-4-enedioate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

(4S)-4-hydroxy-2-oxoheptanedioate

cis,cis-muconate

(+)-muconolactone

muconolactone

2-aminomalonate semialdehyde

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

hydroxypyruvate

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

(E)-2-benzylidenesuccinyl-CoA

(5R)-5-benzyl-hydantoin

(5S)-5-benzyl-hydantoin

(S)-5-hydroxyisourate

1,4-dihydroxy-2-naphthoate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

benzoylsuccinyl-CoA

N²-succinylglutamate

N²-succinyl-L-glutamate 5-semialdehyde

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

glutathionylspermidine

α-D-glucosamine 1-phosphate

(S)-2,3,4,5-tetrahydrodipicolinate

chlorite

(L-threonylcarbamoyl)adenylate

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

2-maleylacetate

(R)-4'-phosphopantothenoyl-L-cysteine

DNA without lesion

pinocembrin chalcone

phloretin

(lipoyl)adenylate

3-hydroxyanthranilate

estrone 3-sulfate

3-β-hydroxyandrost-5-en-17-one 3-sulfate

2-methyl-trans-aconitate

iminodiacetate

nitrilotriacetate

tryptamine

5-methoxyindoleacetaldehyde

5-methoxytryptamine

carbonic acid

S-formylglutathione

β-D-ribosylnicotinate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

(4-hydroxyphenyl)acetate

(S)-2-amino-6-oxohexanoate

carbon monoxide

hexulose 6-phosphate

S-methyl-5'-thioadenosine

S-adenosyl 3-(methylsulfanyl)propylamine

3-fumarylpyruvate

prephytoene diphosphate

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

4-prenylphlorisobutyrophenone

4-hydroxy-2-nonenal

γ-glutamyl-isopropylamide

N-(γ-L-glutamyl)-L-alaninol

L-alaninol

N-ethylammelide

octopamine

(R)-synephrine

1-pyrroline

2-oxoglutaramate

O-1,4-α-L-dihydrostreptosyl-streptidine 6-phosphate

dihydrostreptomycin 6-phosphate

dTDP-L-dihydrostreptose

CDP-N-methyl-L-glucosamine

streptidine 6-phosphate

N¹-amidinostreptamine 6-phosphate

2-amino-3-carboxymuconate-6-semialdehyde

vanillin

H₂

chlorate

crotonate

cyclohex-1,5-diene-1-carbonyl-CoA

6-hydroxycyclohex-1-ene-1-carbonyl-CoA

6-oxocyclohex-1-ene-1-carbonyl-CoA

3-hydroxypimeloyl-CoA

3-oxopimeloyl-CoA

cyclohexane-1-carboxylate

cyclohexane-1-carbonyl-CoA

2-hydroxy-6-oxocyclohexane-1-carbonyl-CoA

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

2-oxepin-2(3H)-ylideneacetyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

(S)-4-hydroxy-2-oxohexanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

(S)-ureidoglycolate

mercuriphenyl acetate

L-xylo-hex-3-ulono-1,4-lactone

2-dehydro-6-phospho-D-gluconate

N⁵-carboxyaminoimidazole ribonucleotide

dehydroprephenate

3-(cyclohexa-1,3-dien-1-yl)-2-oxopropanoate

3-[(1S)-cyclohex-3-en-1-yl)]-2-oxopropanoate

L-3-cyclohex-2'-enylalanine

pseudouridine

autoinducer 2

S-ribosyl-L-homocysteine

4-amino-2-methyl-5-pyrimidinemethanol

glutathioselenol

selenodiglutathione

2-keto-L-gulonate

adipate

6-oxohexanoate

6-aminohexanoate cyclic dimer

α-D-galacturonate 1-phosphate

1-piperideine 6-carboxylate

4-oxoglutaramate

ammonia

bisorganyltrisulfane

5-hydroxyindole thiazolidine carboxylate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

L-dehydro-ascorbate

cyclic-2,3-O-oxalyl-L-threonate

dehydroascorbate (bicyclic form)

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

cyclic- 3,4-O-oxalyl-L-threonate

2,3-dioxo-L-gulonate

2-carboxy-L-xylonolactone

2-carboxy-L-threo-pentonate

ADP

ATP

AMP

adenylo-succinate

GDP

GTP

GMP

XMP

IMP

dATP

dADP

dGTP

dGDP

ITP

IDP

dITP

dIDP

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

2'-deoxyadenosine

2'-deoxyguanosine

hypoxanthine

2'-deoxyinosine

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

5'-deoxyadenosine

cyclic-AMP

dIMP

XTP

ppGpp

pppGpp

dGMP

dAMP

isoguanine

8-oxo-dGTP

8-oxo-GTP

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

ADP-α-D-glucose

GDP-4-dehydro-α-D-rhamnose

GDP-α-D-mannose

GDP-α-D-glucose

GDP-β-L-fucose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

CDP-α-D-glucose

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

dTDP-α-D-glucose

UDP-α-D-glucuronate

UDP-α-D-glucose

UDP-α-D-galactose

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-α-D-galacturonate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

guanine

adenine

uracil

thymine

cytosine

preQ₁

dTMP

dUMP

dCMP

dCDP

dTDP

dUDP

dUTP

dCTP

dTTP

CDP

UDP

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

β-nicotinamide D-ribonucleotide

reduced β-nicotinamide D-ribonucleotide

UTP

CTP

CMP

UMP

2-hydroxy-dATP

5-hydroxy-CTP

NADP⁺

NAD⁺

NADPH

NADH

2'-deoxyuridine

thymidine

2'-deoxycytidine

adenosine

inosine

guanosine

xanthosine

cytidine

uridine

5-fluorouracil

5'-deoxy-5'-fluoroadenosine

5-fluorocytosine

D-gluconate

L-gulonate

D-mannonate

D-altronate

L-idonate

aldehydo-L-galactonate

1-(β-D ribofuranosyl)nicotinamide

3'-ketolactose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

streptomycin

lotaustralin

taxiphyllin

linamarin

linustatin

neolinustatin

arbutin-6-phosphate

salicin 6-phosphate

methyl β-D-glucoside 6-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

4-phospho-D-erythronate

L-rhamnulose 1-phosphate

α-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

α-D-galactose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-galactose 6-phosphate

β-D-galactose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-tagatofuranose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-ribose-1-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

N,N'-diacetylchitobiose 6'-phosphate

N-monoacetylchitobiose 6'-phosphate

sucrose 6^F-phosphate

β-D-cellobiose 6'-phosphate

α,α-trehalose 6-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (mycobacteria)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

β-L-rhamnopyranose

α-L-rhamnopyranose

β-D-fructofuranose

glycolaldehyde

α-D-xylopyranose

aldehydo-D-ribose

β-D-ribopyranose

α-D-ribofuranose

β-D-ribofuranose

β-D-galactopyranose

α-D-galactopyranose

β-D-glucopyranose

α-D-glucopyranose

D-glyceraldehyde

L-glyceraldehyde

5-chloro-5-deoxy-D-ribono-γ-lactone

5-chloro-5-deoxy-D-ribose

D-xylulose

D-ribulose

L-ribulose

keto-L-rhamnulose

keto-D-fructose

keto-L-sorbose

N-acetyl-β-D-glucosamine

glycerol

D-mannitol 1-phosphate

galactitol

D-sorbitol

L-iditol

xylitol

XXXG xyloglucan oligosaccharide

6-kestotriose

6,6-kestotetraose

β-D-cellobiose

maltotriose

6_G-kestotriose

1,6-kestotetraose

1-kestotriose

1,1-kestotetraose

sucrose

melibiose

allolactose

α-maltose

α-lactose

α,α-trehalose

maltotetraose

maltopentaose

maltohexaose

maltoheptaose

stachyose

raffinose

XXLG xyloglucan oligosaccharide

XLXG xyloglucan oligosaccharide

XLLG xyloglucan oligosaccharide

aldehydo-D-galacturonate

phlorisovalerophenone

4-(3'-acetyl-5'-hydroxy-4'-oxo-1',4'-dihydronapthalen-2'-yl)-3-oxobutanoate

(S)-4-(3'-acetyl-5'-hydroxy-4'-oxo-1',4'-dihydronapthalen-2'-yl)-3-hydroxybutanoate

2-((1R,3S),-1',9'-dihydroxy-1'-methyl-10'-oxo-3',4',5',10'-tetrahydro-1H-benzo[g]isochromen-3'-yl)acetate

(S)-DNPA

5-deoxy-dihydrokalafungin

salicylaldehyde

4-methylumbelliferone

scopoletin

coumarin

all-trans-retinal

all-trans-retinol

all-trans-retinoate

all-trans-retinyl palmitate

(2E,6E)-farnesyl diphosphate

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

geranial

(2E,6E)-farnesol

(3S)-linalool

(3R)-linalool

geranyl diphosphate

apo-4'-lycopenal

all-trans-phytoene

15-cis-phytoene

all-trans phytofluene

apo-4'-lycopenoate

dihydrokalafungin

actinorhodin

actinorhodin intermediate

deoxycohumulone

4-prenylphlorisovalerophenone

deoxyhumulone

(3E)-dec-3-enoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

2-trans-nonenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

4-trans-undecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(3R)-hydroxy-5-trans-dodecenoyl-CoA

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

2-trans, 5-cis, 7-trans-tetradecatrienoyl-CoA

5-cis, 7-trans-tetradecadienoyl-CoA

6-trans-tridecenoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

6-cis-tridecenoyl-CoA

(5Z)-tetradecenoyl-CoA

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-octaprenyl diphosphate

geranylgeranyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-undecaprenyl diphosphate

dioleoyl phosphatidate

1-oleoyl-2-lyso-glycerone phosphate

1-oleoyl-sn-glycerol 3-phosphate

α, α'-trehalose 6-α-mycolate

6-O-α-mycolyl-trehalose 6-phosphate

trehalose-cis-methoxy-mono-mycolate

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

trehalose-trans-methoxy-mono-mycolate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

trehalose-cis-keto-mono-mycolate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

trehalose-trans-keto-mono-mycolate

6-O-trans-keto-mycolyl-trehalose 6-phosphate

myo-inositol

scyllo-inosose

1-amino-1-deoxy-scyllo-inositol

1-guanidino-1-deoxy-scyllo-inositol

D-1-guanidino-1-deoxy-3-dehydro-scyllo-inositol

D-1-guanidino-3-amino-1,3-dideoxy-scyllo-inositol

1-amino-1-deoxy-scyllo-inositol 4-phosphate

1-guanidino-1-deoxy-scyllo-inositol 4-phosphate

1D-myo-inositol 3-monophosphate

1D-myo-inositol 4-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 2-monophosphate

hydroquinone

protocatechuate

3,4-dihydroxymandelate

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxyphenylacetate

3,4-dihydroxyphenylglycol

catechol

dopamine

(R)-adrenaline

(R)-noradrenaline

2,3-dihydroxybenzoate

ethylene glycol

ethanol

propan-1-ol

phytol

butan-1-ol

methanol

(2E,6E)-farnesal

L-2-aminopropionaldehyde

fluoroacetaldehyde

methylglyoxal

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

benzaldehyde

phytenal

(S)-lactaldehyde

1-octanal

acetaldehyde

formaldehyde

1-propanal

isobutanal

1-heptanal

butan-1-al

3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone

6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone

caldariellaquinone

diacetyl

isoliquiritigenin

2',4,4',6'-tetrahydroxychalcone

a coenzyme-A group

geranate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

glyoxylate

pyruvate

2-oxoglutarate

2-oxobutanoate

5-chloro-4-hydroxy-2-oxopentanoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

salicylate

vanillate

4-aminobenzoate

benzoate

acetate

allantoate

orotate

(R)-pantoate

gentisate

fluoroacetate

5-chloro-5-deoxy-D-ribonate

(S)-1-pyrroline-5-carboxylate

D-tagaturonate

aldehydo-D-glucuronate

β-D-glucuronate

pristanate

octanoate

palmitate

decanoate

heptanoate

stearate

(9Z,15Z)-12,13-epoxy-octadeca-9,15-dienoate

(12Z,15Z)-9,10-epoxyoctadeca-12,15-dienoate

(9Z,12Z)-15,16-epoxyoctadeca-9,12-dienoate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

(3E,5Z)-tetradecadienoate

linoleate

oleate

α-linolenate

(9Z,15Z)-12,13-dihydroxyoctadeca-9,15-dienoate

(12Z,15Z)-9,10-dihydroxyoctadeca-12,15-dienoate

(9Z,12Z)-15,16-dihydroxyoctadeca-9,12-dienoate

γ-linolenate

di-homo-γ-linolenate

phytenate

(15Z)-tetracosenoate

(2E,6E)-farnesoate

3-oxoadipate

formate

propanoate

(S)-lactate

(R)-lactate

(2R,3S)-2-methylisocitrate

(R)-glycerate

(S)-2-hydroxyglutarate

(R)-3-hydroxybutanoate

3-carboxy-cis,cis-muconate

trans-aconitate

cis-aconitate

(2S,3S)-2-methylcitrate

cis-2-methylaconitate

D-threo-isocitrate

chorismate

D-glucarate

D-galactarate

succinate

L-aspartate

fumarate

(S)-malate

(4S)-4-hydroxy-2-oxoglutarate

L-kynurenine

L-α-amino-ε-keto-pimelate

L-aspartyl-4-phosphate

L-2-amino-3-oxobutanoate

L-selenomethionine

seleno-L-homocysteine

L-saccharopine

O-acetyl-L-homoserine

3-hydroxy-L-kynurenine

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

N-acetyl-L-glutamate

N-acetyl-L-methionine

formyl-L-isoglutamine

N-formimino-L-glutamate

sarcosine

S-methyl-L-methionine

3-phospho-L-serine

D-alanine

D-glutamate

D-aspartate

L-phenylalanine

L-histidine

L-tryptophan

L-tyrosine

L-cysteine

glycine

L-serine

L-asparagine

L-threonine

L-glutamine

L-glutamate

L-arginine

L-lysine

L-alanine

L-proline

L-leucine

creatine

β-alanine

(S)-3-amino-2-methylpropanoate

L-isoleucine

L-valine

L-selenocysteine

L-methionine

L-cystathionine

L,L-diaminopimelate

L-ornithine

L-isoglutamine

L-citrulline

O-succinyl-L-homoserine

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

hypoglycin A

L-homocysteine

L-aspartate 4-semialdehyde

L-homoserine

O-phospho-L-homoserine

S-sulfo-L-cysteine

L-glutamate-5-semialdehyde

L-canaline

L-4-hydroxyglutamate semialdehyde

L-allo-threonine

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

4-hydroxybenzoate

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

4-tyrosol

cyanuric acid

2-[(1R,6S)-1,6-dihydroxycyclohexa-2,4-dien-1-yl]acetyl-coA

urate

benzene

coumarinate

luteolin

2-phenylethylamine

tyramine

serotonin

phenol

4-methylphenol

caldariellaquinol

3-demethylubiquinol-8

demethylmenaquinol-13

demethylmenaquinol-12

demethylmenaquinol-11

demethylmenaquinol-10

demethylmenaquinol-6

demethylmenaquinol-9

demethylmenaquinol-7

demethylmenaquinol-8

menaquinol-13

menaquinol-12

menaquinol-11

menaquinol-10

menaquinol-6

menaquinol-9

menaquinol-7

menaquinol-8

ubiquinol-8

(indol-3-yl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

vanillyl mandelate

3-methoxy-4-hydroxyphenylglycol

metanephrine

normetanephrine

6-isobutyl-4-hydroxy-2-pyrone

atrazine

hydrogen cyanide

acrylonitrile

3-cyanopyridine

propionitrile

(indole-3-yl)acetonitrile

preQ₀

n-butyronitrile

(2R)-2-hydroxy-2-methylbutanenitrile

2-hydroxy-2-methylpropanenitrile

7,8-dihydrolumazine

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin

7,8-dihydromonapterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydropteroate

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

riboflavin

FMN

FAD

FMNH₂

reduced riboflavin

FADH₂

6,7-dimethyl-8-(1-D-ribityl)lumazine

sirohydrochlorin

cobyrinate

precorrin-2

precorrin-1

cobalt-precorrin-2

cobalt-precorrin-5A

cobalt-precorrin-4

cobalt-precorrin-6A

cobalt-precorrin-5B

cobalt-precorrin-6B

cobalt-precorrin-8

cobalt-precorrin-7

cobalt-precorrin-3

salinosporamide A

L-ascorbate

nicotinate

nicotinamide

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxamine

pyridoxine

pyridoxal

coenzyme A

(R)-lipoate

(R)-NADHX

(S)-NADHX

glycine betaine

D-glucono-1,5-lactone

trans-dienelactone

cis-dienelactone

L-galactono-1,4-lactone

succinyl-CoA

acetyl-CoA

phenylacetyl-CoA

2-methylacetoacetyl-CoA

3'-dephospho-CoA

malonyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

methylacrylyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

(3S)-hydroxyadipyl-CoA

(E)-2-methylcrotonoyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-hydroxyisovaleryl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

4-hydroxybenzoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

dihomo γ-linolenoyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

(2E,5Z)-tetradecenoyl-CoA

glutaryl-CoA

(E)-glutaconyl-CoA

isovaleryl-CoA

dihydro-4-coumaroyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoyl-CoA

isobutanoyl-CoA

2-methylbutanoyl-CoA

4-chloro-3-hydroxybutyryl-CoA

4-chloro-crotonyl-CoA

chloroethylmalonyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

oleoyl-CoA

3-oxoadipyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

3-oxo-palmitoyl-CoA

3-oxooctanoyl-CoA

3-oxododecanoyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

palmitoyl-CoA

stearoyl-CoA

pristanoyl-CoA

hexanoyl-CoA

decanoyl-CoA

lauroyl-CoA

octanoyl-CoA

propanoyl-CoA

butanoyl-CoA

cerotoyl-CoA

2-carboxy-cerotoyl-CoA

(Z)-15-tetracosenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(3Z)-dodec-3-enoyl-CoA

(S)-malyl-CoA

phytenoyl-CoA

(E)-cinnamoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-octadec-2-enoyl-CoA

crotonyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

estrone

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

phenylacetate

(+)-7-epi-jasmonate

3,22-dioxochol-4-en-24-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

(25S)-3-oxocholest-4-en-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oate

3,24-dioxocholest-4-en-26-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3-β-hydroxyandrost-5-en-17-one

androst-4-ene-3,17-dione

androsta-1,4-diene-3,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

(S)-(+)-allantoin

6-caprolactam

acetamide

2-chloroacetate

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

betaine aldehyde

choline

betaine aldehyde hydrate

agmatine

putrescine

spermidine

cadaverine

N-acetylputrescine

4-aminobutanal

2-aminoprop-2-enoate

2-iminopropanoate

(2Z)-2-aminobut-2-enoate

4-[(E)-2-(methylamino)ethenyl]phenol

4-[(Z)-2-aminoethenyl]phenol

sulfate

nitrite

sulfite

selenate

thiosulfate

hydrogencarbonate

superoxide

nitrate

perchlorate

selenite

hydrogensulfite

OH^-

chloride

phosphate

diphosphate

triphosphate

Fe³⁺

Cu²⁺

Fe²⁺

Hg²⁺

Co²⁺

Cd²⁺

ammonium

H⁺

trimethyl sulfonium

3-dimethylsulfoniopropionaldehyde

3-(methylsulfanyl)propanal

methionol

S-(hydroxymethyl)glutathione

dimethyl sulfide

glutathione

(R)-S-lactoylglutathione

3-sulfopyruvate

L-cysteate

taurine

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

5-(2-hydroxyethyl)-4-methylthiazole

thiocyanate

methanethiol

mycothiol

S-sulfanylglutathione

2,4-dinitrophenyl-S-glutathione

1-chloro-2,4-dinitrobenzene

hydroxyl radical

monodehydroascorbate radical

(S)-3-hydroxy-isobutanoate

5,10-methenyltetrahydrofolate mono-L-glutamate

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

N-acetyl-D-mannosamine 6-phosphate

α-D-glucosamine 6-phosphate

(2R)-2,3-dihydroxy-3-methylbutanoate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

sn-glycerol 1-phosphate

oxygen

hydrogen sulfide

Hg⁰

S⁰

uroporphyrinogen-III

coproporphyrinogen I

uroporphyrinogen-I

protoporphyrin IX

protoporphyrinogen IX

protoheme

cobalt-sirohydrochlorin

adenosylcobyrate

adenosyl-cob(III)yrinate a,c-diamide

cob(II)yrinate a,c-diamide

cobalt-factor III

cob(II)yrinate c-monoamide

phosphonoacetaldehyde

ethylphosphate

DNA with lesion

(glutathion-S-yl)-4-hydroxy-2-nonenal

2-iminobutanoate

2-iminosuccinate

4-[(2Z)-2-(methylimino)ethyl]phenol

4-(2-iminoethyl)phenol

L-cysteinylglycine

N-acetyl-L-glutaminyl-L-glutamine amide

N-acetyl-L-glutaminyl-L-glutamine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

(R)-4-hydroxymandelate

(S)-4-hydroxymandelate

hypoglycin B