an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

(R)-4'-phosphopantothenoyl-L-cysteine

5-amino-6-(5-phospho-D-ribosylamino)uracil

5-amino-6-(5-phospho-D-ribitylamino)uracil

dialurate

(S)-4-amino-5-oxopentanoate

propan-2-ol

4-aminobutanoate

2-amino-3-carboxymuconate-6-semialdehyde

glutathioselenol

selenodiglutathione

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

7-epicholate

4-amino-2-methyl-5-pyrimidinemethanol

protoanemonin

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

4-maleyl-acetoacetate

creatinine

D-glycero-β-D-manno-heptose 1-phosphate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

2-dehydro-6-phospho-D-gluconate

2-keto-D-gluconate

L-xylo-hex-3-ulono-1,4-lactone

1,4-dihydroxy-2-naphthoate

N⁵-carboxyaminoimidazole ribonucleotide

core oligosaccharide-lipid A (E. coli K-12 core type)

(R)-1-amino-2-propanol O-2-phosphate

urocanate

4-imidazolone-5-propanoate

UDP-4-deoxy-4-formamido-β-L-arabinopyranose

4-deoxy-4-formamido-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

(3S,5S)-3,5-diaminohexanoate

(S)-5-amino-3-oxohexanoate

(salicyl)adenylate

crotonate

cyclohex-1,5-diene-1-carbonyl-CoA

6-hydroxycyclohex-1-ene-1-carbonyl-CoA

6-oxocyclohex-1-ene-1-carbonyl-CoA

3-hydroxypimeloyl-CoA

3-oxopimeloyl-CoA

cyclohexane-1-carboxylate

cyclohexane-1-carbonyl-CoA

2-hydroxy-6-oxocyclohexane-1-carbonyl-CoA

autoinducer 2

2-hydroxy-5-carboxymethylmuconate semialdehyde

5-carboxymethyl-2-hydroxymuconate

(4S)-4-hydroxy-2-oxoheptanedioate

N²-succinyl-L-arginine

N²-succinyl-L-ornithine

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

(S)-4-hydroxy-2-oxohexanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

pyruvic oxime

α-D-galacturonate 1-phosphate

L-dehydro-ascorbate

butanoyl phosphate

3-hydroxypropanoate

CO₂

coproporphyrinogen III

glycerone phosphate

dihydroxyacetone

phosphoenolpyruvate

H₂O

hydroxylamine

ammonia

oxaloacetate

4-hydroxy-2-nonenal

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

L-canavanine

canavaninosuccinate

L-arginino-succinate

(S)-dihydroorotate

orotidine 5'-phosphate

xanthine

L-histidinol phosphate

imidazole acetol-phosphate

L-arogenate

4-amino-4-deoxychorismate

2,3-didehydroadipyl-CoA

(E)-4-coumaroyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

(E)-2-benzylidenesuccinyl-CoA

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

acetoacetate

arsenite

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

D-erythro-imidazole-glycerol-phosphate

(R)-4'-phosphopantothenate

(R)-pantothenate

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

shikimate 3-phosphate

shikimate

hydrogen peroxide

citrate

propionamide

(indol-3-yl)acetamide

4-guanidinobutanoate

4-guanidinobutyramide

acrylate

acrylamide

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-galactonate 6-phosphate

2-dehydro-3-deoxy-D-galactonate

urea-1-carboxylate

urea

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

H₂

2-dehydropantoate

3-methyl-2-oxobutanoate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

4-phosphooxy-L-threonine

5-aminopentanoate

1-piperideine 6-carboxylate

1-piperideine-2-carboxylate

4-oxoglutaramate

(3E)-2-oxopent-3-enoate

2,6-dioxo-6-phenylhexa-3-enoate

cyclic-2,3-O-oxalyl-L-threonate

dehydroascorbate (bicyclic form)

bisorganyltrisulfane

5-hydroxyindole thiazolidine carboxylate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

enol-phenylpyruvate

histidinol

cyclic- 3,4-O-oxalyl-L-threonate

2,3-dioxo-L-gulonate

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2-carboxy-L-xylonolactone

2-carboxy-L-threo-pentonate

hydroxypyruvate

(4-hydroxyphenyl)acetate

4-acetamidobutanoate

4-acetamidobutanal

N²-succinylglutamate

N²-succinyl-L-glutamate 5-semialdehyde

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

N¹-(5-phospho-β-D-ribosyl)glycinamide

γ-L-glutamyl 5-phosphate

nicotinate adenine dinucleotide

β-nicotinate D-ribonucleotide

3-oxopropanoate

formamide

(2R,3S)-3-methylmalate

citraconate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropylmalate

N-acetyl-L-glutamate 5-semialdehyde

O-ureido-L-homoserine

carbamoyl phosphate

itaconate

4-methyl-2-oxopentanoate

(S)-3-methyl-2-oxopentanoate

DNA without lesion

succinate semialdehyde

hydrogenobyrinate a,c-diamide

hydrogenobyrinate

5-enolpyruvoyl-shikimate 3-phosphate

α-ribazole 5'-phosphate

5,6-dimethylbenzimidazole

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

5-methylcytosine

biuret

butyramide

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-ureidoglycolate

S-ribosyl-L-homocysteine

5-deoxy-α-ribose 1-phosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

S-methyl-5'-thioadenosine

5-(methylsulfanyl)-α-D-ribose

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

oxalate

D-gluconate 6-phosphate

6-phospho D-glucono-1,5-lactone

N-acetyl-D-muramate 6-phosphate

1,6-anhydro-N-acetyl-β-muramate

ethanolamine

2-iminoacetate

ethylamine

N-ethylglycine

methylamine

5-methylsalicylate

4-methylsalicylate

thiamine phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

tartronate semialdehyde

O-acetyl-L-serine

2-maleylacetate

prephenate

2-dehydro-3-deoxy-D-gluconate

3-deoxy-D-glycero-2,5-hexodiulosonate

3-dehydro-2-deoxy-D-gluconate

2-deoxygluconate

2-pyrone-4,6-dicarboxylate

iminodiacetate

nitrilotriacetate

histidinal

1-deoxy-L-glycero-tetrulose 4-phosphate

2-C-methyl-D-erythritol 4-phosphate

3-dehydroshikimate

3-deoxy-D-manno-octulosonate 8-phosphate

3-phosphooxypyruvate

N-acetyl-β-glucosaminylamine

N⁴-(β-N-acetyl-D-glucosaminyl)-L-asparagine

3-oxopristanoyl-CoA

4,8,12-trimethyltridecanoyl-CoA

benzoylsuccinyl-CoA

carbon monoxide

L-β-lysine

3-ureidopropanoate

α-ribazole

prephytoene diphosphate

4-fumaryl-acetoacetate

2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate

hydrogen selenide

carbonic acid

2-phosphoglycolate

N-carbamoyl-D-phenylglycine

D-phenylhydantoin

2,5-dioxopentanoate

5-dehydro-4-deoxy-D-glucarate

5-dehydro-D-gluconate

prenyl diphosphate

N-acetylglutamyl-phosphate

(5R)-5-benzyl-hydantoin

(5S)-5-benzyl-hydantoin

S-adenosyl 3-(methylsulfanyl)propylamine

quinolinate

3-maleylpyruvate

acetyl phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-phospho-β-D-ribosylamine

lipid IV_A

lipid A disaccharide (E. coli)

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

glycolate

4-methyl-3-oxoadipate-enol-lactone

3-methylmuconolactone

glutathione disulfide

4-amino-4-deoxy-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

(S)-4-hydroxy-2-oxopentanoate

2-oxopent-4-enoate

(2E)-2-hydroxypenta-2,4-dienoate

(4Z)-2-oxohept-4-enedioate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

ADP-L-glycero-β-D-manno-heptose

ADP-D-glycero-β-D-manno-heptose

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

anthranilate

N-(5-phosphoribosyl)-anthranilate

oxalosuccinate

3'-phosphoadenylyl-sulfate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

5-oxo-L-proline

N-methylhydantoin

S-acetyldihydrolipoamide

dihydrolipoamide

thiamine diphosphate

2-(α-hydroxyethyl)thiamine diphosphate

α-D-glucosamine 1-phosphate

lipid X

isopentenyl diphosphate

6-amino-2-oxohexanoate

L-selenocystathionine

L-gulono-1,4-lactone

porphobilinogen

5-aminolevulinate

macrocin

(2-hydroxyphenyl)acetate

homogentisate

4-methyl-3-oxoadipate

nicotine-1'-N-oxide

N,N-dimethylaniline-N-oxide

N,N-dimethylaniline

4'-phosphopantetheine

5-amino-6-(D-ribitylamino)uracil

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

selenophosphate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

cis,cis-muconate

(+)-muconolactone

muconolactone

(S)-2-amino-6-oxohexanoate

2-phenylethanol

2-methylbutanal

2-methylbutanol

3-methylbutanal

3-methylbutanol

isobutanol

indole-3-glycol aldehyde

indole-3-glycol

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxyindole acetaldehyde

5-hydroxytryptophol

cyanate

trans-O-hydroxybenzylidenepyruvate

(indol-3 yl)acetyl-CoA

(indol-3-yl)pyruvate

(2S,3S)-2,3-dihydroxy-5-oxohexanedioate

N-succinyl-L,L-2,6-diaminopimelate

isoquinolin-2(1H)-one

isoquinoline

(L-threonylcarbamoyl)adenylate

2-oxovalerate

3-ethylmalate

(2S)-2-isopropyl-3-oxosuccinate

sym-homospermidine

propane-1,3-diamine

preuroporphyrinogen

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

2'-hydroxypseudobaptigenin

(3R)-sophorol

2-hydroxyformononetin

β-D-fructose 2,6-bisphosphate

3-deoxy-α-D-manno-2-octulosonate

S-formylglutathione

4-methylphenol

L-homocysteine

hypoglycin B

L-α-amino-ε-keto-pimelate

carbamate

L-methionine

L-cysteine

L-phenylalanine

L-alanine

glycine

L-tryptophan

L-isoleucine

L-proline

L-valine

L-leucine

L-selenocysteine

L-glutamate

L-aspartate

L-arginine

L-lysine

L-tyrosine

L-glutamine

L-aspartyl-4-phosphate

L-asparagine

L-isoglutamine

L-histidine

L-ornithine

L-serine

L-threonine

L,L-diaminopimelate

L-cystathionine

N-carbamoyl-L-aspartate

N⁶-acetyl-N⁶-hydroxy-L-lysine

formyl-L-isoglutamine

N-formyl-L-glutamate

N-acetyl-L-ornithine

N-acetyl-L-citrulline

N-formimino-L-glutamate

L-citrulline

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-4-hydroxyglutamate semialdehyde

L-glutamate-5-semialdehyde

L-canaline

O-succinyl-L-homoserine

L-aspartate 4-semialdehyde

S-sulfo-L-cysteine

hypoglycin A

L-homoserine

O-phospho-L-homoserine

1-aminocyclopropane-1-carboxylate

L-allo-threonine

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

seleno-L-homocysteine

L-saccharopine

3-phospho-L-serine

O-acetyl-L-homoserine

N⁶-hydroxy-L-lysine

N-carbamoylglycine

N-acetyl-L-glutamate

sarcosine

D-alanine

D-glutamate

D-lysine

D-aspartate

N-carbamoylsarcosine

(R)-β-lysine

β-alanine

(S)-3-amino-2-methylpropanoate

(R)-3-amino-2-methylpropanoate

L-threo-3-phenylserine

2'-deoxyguanosine

dGMP

dAMP

ADP

ATP

IMP

GDP

adenylo-succinate

GTP

IDP

ITP

5'-deoxyadenosine

GMP

hypoxanthine

AMP

XMP

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

isoguanine

8-oxo-dGTP

8-oxo-GTP

dITP

dIDP

dGTP

dGDP

dATP

dADP

cyclic-AMP

2'-deoxyinosine

2'-deoxyadenosine

5,6-dihydrothymine

5,6-dihydrouracil

CDP-4-dehydro-6-deoxy-α-D-glucose

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

GDP-α-D-glucose

GDP-4-dehydro-α-D-rhamnose

GDP-α-D-perosamine

GDP-α-D-mannose

GDP-α-D-rhamnose

CDP-α-D-glucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-4-dehydro-β-L-rhamnose

dTDP-α-D-glucose

dTDP-β-L-rhamnose

UDP-β-L-threo-pentapyranos-4-ulose

UDP-4-amino-4-deoxy-β-L-arabinopyranose

UDP-α-D-galactofuranose

UDP-α-D-galacturonate

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-galactose

UDP-α-D-glucose

UDP-N-acetyl-α-D-mannosamine

UDP-β-L-iduronate

UDP-α-D-glucuronate

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

CMP-3-deoxy-β-D-manno-octulosonate

guanine

adenine

cytosine

thymine

uracil

preQ₁

N¹-ethyladenine

N3-methylcytosine

N¹-methyladenine

NADP⁺

NAD⁺

NADPH

NADH

cyclic di-3',5'-guanylate

dCMP

dTMP

dUMP

dUDP

dCDP

dTDP

dUTP

dCTP

dTTP

UDP

CDP

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

β-nicotinamide D-ribonucleotide

UTP

CTP

UMP

CMP

5-hydroxy-CTP

2-hydroxy-dATP

2'-deoxyuridine

2'-deoxycytidine

guanosine

adenosine

inosine

5-fluorouracil

5-fluorocytosine

L-idonate

aldehydo-L-galactonate

D-mannonate

D-altronate

D-gluconate

L-gulonate

5-dehydro-4-deoxy-D-glucuronate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

D-sedoheptulose 1,7-bisphosphate

4-phospho-D-erythronate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

α-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-ribose-1-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-glyceraldehyde 3-phosphate

sucrose 6^F-phosphate

α,α-trehalose 6-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

D-ribulose-1,5-bisphosphate

a peptidoglycan dimer (mycobacteria)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

β-D-fructofuranose

glycolaldehyde

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

β-D-galactopyranose

β-D-mannopyranose

β-D-glucopyranose

α-D-glucopyranose

aldehydo-D-mannose

D-glyceraldehyde

L-glyceraldehyde

keto-D-fructose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

glycerol

galactitol

D-mannitol

maltotriose

glucosyl-(heptosyl)₂-Kdo₂-lipid A

glucosyl-(heptosyl)₂-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₂-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₃-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

4'-α-L-Ara4N-α-Kdo-(2→4)-α-Kdo-(2→6)-[P4'-α-L-ara4N]-lipid A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

heptosyl-Kdo₂-lipid IV_A

heptosyl-Kdo₂-lipid A

(heptosyl)₂-Kdo₂-lipid A

sucrose

α,α-trehalose

maltopentaose

maltohexaose

maltotetraose

maltoheptaose

aldehydo-D-galacturonate

salicylaldehyde

all-trans-retinal

all-trans-retinoate

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

(2E,6E)-farnesyl diphosphate

geranial

apo-4'-lycopenal

all-trans-phytoene

15-cis-phytoene

apo-4'-lycopenoate

tylosin

aerobactin

N¹-citryl-N⁶-acetyl-N⁶-hydroxy-L-lysine

ferrichrome

ferric-enterobactin complex

(S)-nicotine

(3R)-hydroxy-nonanoyl-CoA

2-trans-nonenoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

(3R)-hydroxy-5-trans-dodecenoyl-CoA

(2E,5E)-dodeca-2,5-dienoyl-CoA

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

2-trans, 5-cis, 7-trans-tetradecatrienoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

(3E)-dec-3-enoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

4-trans-undecenoyl-CoA

4-cis-undecenoyl-CoA

3-decaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-hexaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

geranylgeranyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-nonaprenyl diphosphate

dioleoyl phosphatidate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-oleoyl-2-lyso-glycerone phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

myo-inositol

1D-myo-inositol 2-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 4-monophosphate

1D-myo-inositol 3-monophosphate

2,3-dihydroxybenzoate

3,4-dihydroxyphenylacetate

4-chlorocatechol

4-methylcatechol

catechol

biphenyl-2,3-diol

protocatechuate

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxyphenylglycol

butan-1-ol

ethanol

phytol

propan-1-ol

3-(N-morpholino)propanal

methylglyoxal

benzaldehyde

phenylacetaldehyde

(4-hydroxyphenyl)acetaldehyde

phytenal

(S)-lactaldehyde

acetaldehyde

formaldehyde

1-octanal

isobutanal

butan-1-al

1-heptanal

1-propanal

3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone

6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone

diacetyl

acetone

a coenzyme-A group

geranate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

(1E)-4-oxobut-1-ene-1,2,4-tricarboxylate

pyruvate

2-oxoglutarate

glyoxylate

2-oxobutanoate

5-chloro-4-hydroxy-2-oxopentanoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

salicylate

benzoate

4-aminobenzoate

orotate

acetate

allantoate

5-chloro-5-deoxy-D-ribonate

gentisate

(R)-pantoate

(S)-1-pyrroline-5-carboxylate

D-tagaturonate

aldehydo-D-glucuronate

pristanate

butanoate

stearate

palmitate

decanoate

octanoate

heptanoate

linoleate

oleate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

α-linolenate

(3E,5Z)-tetradecadienoate

di-homo-γ-linolenate

phytenate

(15Z)-tetracosenoate

3-oxoadipate

propanoate

formate

(R)-lactate

(S)-lactate

(2R,3S)-2-methylisocitrate

(1E,3E)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate

(R)-glycerate

(R)-3-hydroxybutanoate

cis-aconitate

cis-homoaconitate

(2R)-homocitrate

cis-2-methylaconitate

(2S,3S)-2-methylcitrate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

3-(carbamoylamino)-2-methylpropanoate

chorismate

(3E)-2-oxohex-3-enedioate

D-galactarate

fumarate

succinate

(S)-malate

(4S)-4-hydroxy-2-oxoglutarate

cyanuric acid

4-hydroxybenzoate

(2E,4E)-6-(2-aminophenyl)-2-hydroxy-6-oxohexa-2,4-dienoate

2'-aminobiphenyl-2,3-diol

2-[(1R,6S)-1,6-dihydroxycyclohexa-2,4-dien-1-yl]acetyl-coA

4-tyrosol

5-chlorosalicylate

4-chlorosalicylate

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

3-demethylubiquinol-9

3-demethylubiquinol-7

3-demethylubiquinol-10

3-demethylubiquinol-8

demethylmenaquinol-8

demethylmenaquinol-13

demethylmenaquinol-12

demethylmenaquinol-11

demethylmenaquinol-10

demethylmenaquinol-6

demethylmenaquinol-9

demethylmenaquinol-7

menaquinol-8

menaquinol-13

menaquinol-12

menaquinol-11

menaquinol-10

menaquinol-6

menaquinol-9

menaquinol-7

ubiquinol-9

ubiquinol-7

ubiquinol-10

ubiquinol-8

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

3-methoxy-4-hydroxyphenylglycol

(indole-3-yl)acetonitrile

propionitrile

acrylonitrile

3-cyanopyridine

preQ₀

n-butyronitrile

(3R)-vestitone

2-hydroxychromene-2-carboxylate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin 2',3'-cyclic phosphate

7,8-dihydroneopterin 3'-triphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydromonapterin

7,8-dihydroneopterin

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

FAD

FMN

riboflavin

FADH₂

FMNH₂

reduced riboflavin

6,7-dimethyl-8-(1-D-ribityl)lumazine

9H carbazole

hydantoin

sirohydrochlorin

cobyrinate

precorrin-1

cobalt-precorrin-5A

cobalt-precorrin-4

cobalt-precorrin-6B

cobalt-precorrin-8

cobalt-precorrin-7

cobalt-precorrin-3

cobalt-precorrin-6A

cobalt-precorrin-5B

precorrin-5

precorrin-4

precorrin-8x

precorrin-7

precorrin-6B

precorrin-6A

precorrin-3B

precorrin-3A

precorrin-2

adenosylcobalamin

cob(I)alamin

L-ascorbate

nicotinate

nicotinamide

thiamine

pyridoxine

pyridoxal

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxamine

coenzyme A

(R)-NADHX

(S)-NADHX

glycine betaine

D-glucono-1,5-lactone

L-galactono-1,4-lactone

trans-dienelactone

cis-dienelactone

3'-dephospho-CoA

acryloyl-CoA

(S)-3-aminobutanoyl-CoA

2-methylbutanoyl-CoA

3-hydroxypropanoyl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

methylacrylyl-CoA

isobutanoyl-CoA

acetyl-CoA

(E)-2-methylcrotonoyl-CoA

3-hydroxyisovaleryl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

(2E,5Z)-tetradecenoyl-CoA

phenylacetyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

2-methylacetoacetyl-CoA

malonyl-CoA

(+)-7-epi-jasmonoyl-CoA

dihomo γ-linolenoyl-CoA

itaconyl-CoA

succinyl-CoA

4-hydroxybenzoyl-CoA

oxalyl-CoA

formyl-CoA

glutaryl-CoA

(E)-glutaconyl-CoA

gentisyl-CoA

salicyl-CoA

3-methylcrotonyl-CoA

isovaleryl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

oleoyl-CoA

3-oxoadipyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxooctadecanoyl-CoA

3-oxo-palmitoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

3-oxooctanoyl-CoA

3-oxohexanoyl-CoA

3-oxodecanoyl-CoA

3-oxododecanoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

hexadecanedioyl-CoA

stearoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

decanoyl-CoA

octanoyl-CoA

hexanoyl-CoA

lauroyl-CoA

propanoyl-CoA

butanoyl-CoA

cerotoyl-CoA

(Z)-15-tetracosenoyl-CoA

2-carboxy-cerotoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(3R)-3-hydroxypentanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(3Z)-dodec-3-enoyl-CoA

(S)-malyl-CoA

phytenoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-octadec-2-enoyl-CoA

crotonyl-CoA

(R)-methylmalonyl-CoA

(S)-methylmalonyl-CoA

phenylacetate

(indol-3-yl)acetate

(+)-7-epi-jasmonate

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

3α,7α,12β-trihydroxy-5β-cholan-24-oate

3,24-dioxocholest-4-en-26-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oate

3,22-dioxochol-4-en-24-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

isocholate

3-dehydrocholate

cholate

glycocholate

androst-4-ene-3,17-dione

androsta-1,4-diene-3,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

(S)-(+)-allantoin

acetamide

3-chloro-cis,cis-muconate

sn-glycero-3-phosphoethanolamine

sn-glycero-3-phosphocholine

glycerophosphoserine

glycerophosphoglycerol

betaine aldehyde hydrate

betaine aldehyde

choline

agmatine

spermidine

putrescine

spermine

cadaverine

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

2-iminopropanoate

selenite

sulfate

hydrogencarbonate

hydrogensulfite

OH^-

molybdate

sulfite

superoxide

nitrite

selenide

thiosulfate

nitrate

selenate

chloride

phosphonate

phosphate

diphosphate

triphosphate

Fe³⁺

H⁺

ammonium

K⁺

Fe²⁺

Ni²⁺

Co²⁺

Mo²⁺

trimethyl sulfonium

dimethyl sulfide

S-(hydroxymethyl)glutathione

3-(methylsulfanyl)propanal

methionol

glutathione

(R)-S-lactoylglutathione

3-sulfopyruvate

L-cysteate

3-(N-morpholino)propanesulfonate

isethionate

1-butanesulfonate

methanesulfonate

5-(2-hydroxyethyl)-4-methylthiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

methanethiol

S-sulfanylglutathione

2,4-dinitrophenyl-S-glutathione

1-chloro-2,4-dinitrobenzene

hydroxyl radical

monodehydroascorbate radical

nitric oxide

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

N-acetyl-L-glutaminyl-L-glutamine amide

N-acetyl-L-glutaminyl-L-glutamine

L-cysteinylglycine

L-alanyl-L-glutamate

L-alanyl-D-glutamate

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

2-methoxy-6-(all-trans-octaprenyl)phenol

2-octaprenylphenol

(S)-3-hydroxy-isobutanoate

3-(all-trans-octaprenyl)benzene-1,2-diol

5,10-methenyltetrahydrofolate mono-L-glutamate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

(R)-citramalate

(S)-ureidoglycine

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(2R)-2,3-dihydroxy-3-methylbutanoate

2,3-diphospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 3-phosphate

oxygen

S⁰

hydrogen sulfide

uroporphyrinogen-III

coproporphyrinogen I

uroporphyrinogen-I

protoporphyrinogen IX

protoporphyrin IX

(Z,Z)-biliverdin-IX α

protoheme

N₂

cobalt-sirohydrochlorin

cobalt-factor III

cob(II)yrinate a,c-diamide

cob(II)yrinate c-monoamide

adenosylcobalamin 5'-phosphate

adenosylcobinamide-GDP

adenosylcobyrate

adenosyl-cob(III)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

adenosylcobinamide

cob(I)inamide

adenosyl-cobinamide phosphate

carboxyphosphinopyruvate

1-carboxyvinyl carboxyphosphonate

3-(hydroxyphosphinoyl)pyruvate

ethylphosphate

DNA with lesion

(glutathion-S-yl)-4-hydroxy-2-nonenal

2-iminobutanoate

2-iminosuccinate