an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

urea

urea-1-carboxylate

4-amino-4-deoxychorismate

3-keto-β-D-galactose

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

(L-threonylcarbamoyl)adenylate

2-dehydropantoate

(S)-2,3,4,5-tetrahydrodipicolinate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

1,4-dihydroxy-2-naphthoate

ethanolamine

O-phosphoethanolamine

phosphocholine

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

5-aminopentanoate

dihydrolipoate

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

indole-3-glycol

indole-3-glycol aldehyde

isobutanol

3-methylbutanol

3-methylbutanal

2-methylbutanol

2-methylbutanal

2-phenylethanol

2-C-methyl-D-erythritol 4-phosphate

4-fumaryl-acetoacetate

acetoacetate

(4-hydroxyphenyl)acetate

hydrogen peroxide

glycolate

vanillin

salicyl alcohol

methylsalicylate

D-gluconate 6-phosphate

6-phospho D-glucono-1,5-lactone

S-methyl-5'-thioadenosine

5-(methylsulfanyl)-α-D-ribose

2-isopropylmaleate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

4'-phosphopantetheine

α-D-galactosyl-diphosphoundecaprenol

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

(S)-dihydroorotate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

histidinal

histidinol

L-histidinol phosphate

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

isopentenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

citrate

prenyl diphosphate

N-(5-phosphoribosyl)-anthranilate

anthranilate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

shikimate 3-phosphate

xanthine

5-enolpyruvoyl-shikimate 3-phosphate

3-dehydroquinate

3-dehydroshikimate

4-methyl-2-oxopentanoate

oxalosuccinate

glycerone phosphate

orotidine 5'-phosphate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

S-ribosyl-L-homocysteine

autoinducer 2

(R)-pantothenate

(R)-4'-phosphopantothenate

CO₂

quinolinate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

4-phosphooxy-L-threonine

3-phosphooxypyruvate

propionamide

(indol-3-yl)acetamide

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

N-succinyl-2-amino-6-ketopimelate

phosphoenolpyruvate

3-deoxy-D-arabino-heptulosonate 7-phosphate

oxaloacetate

N-succinyl-L,L-2,6-diaminopimelate

prephenate

3-methyl-2-oxobutanoate

(2S)-2-isopropylmalate

α-D-glucosamine 1-phosphate

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

γ-L-glutamyl 5-phosphate

L-canavanine

O-ureido-L-homoserine

canavaninosuccinate

L-arginino-succinate

carbamoyl phosphate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

H₂O

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

(S)-ureidoglycolate

(R)-4'-phosphopantothenoyl-L-cysteine

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

5-amino-6-(D-ribitylamino)uracil

(2R,4S)-2, 4-diaminopentanoate

(2R)-2-amino-4-oxopentanoate

2-amino-3-carboxymuconate-6-semialdehyde

4-amino-2-methyl-5-pyrimidinemethanol

2-(α-hydroxyethyl)thiamine diphosphate

H₂

carbon monoxide

carbonic acid

2-iminoacetate

O-acetyl-L-serine

4-aminobutanoate

succinate semialdehyde

3-oxopropanoate

L-selenocystathionine

(indol-3-yl)pyruvate

thiamine diphosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

1-phosphatidyl-myo-inositol

1-phosphatidyl-myo-inositol 2-mannose

4-pyridoxolactone

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-hydroxyindole thiazolidine carboxylate

ammonia

1-deoxy-L-glycero-tetrulose 4-phosphate

acetyl phosphate

hydroxypyruvate

3-ureidopropanoate

(5S)-5-benzyl-hydantoin

(5R)-5-benzyl-hydantoin

coproporphyrinogen III

itaconate

shikimate

DNA without lesion

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

2-iminosuccinate

2-iminobutanoate

2-iminopropanoate

L-homocysteine

4-methylphenol

DNA with lesion

ethylphosphate

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobyrate

protoheme

protoporphyrin IX

uroporphyrinogen-III

protoporphyrinogen IX

hydrogen sulfide

oxygen

2-chloroacetate

sn-glycerol 3-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

5,10-methenyltetrahydrofolate mono-L-glutamate

methionol

3-(methylsulfanyl)propanal

dimethyl sulfide

methanethiol

glutathione

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

L-cysteate

3-sulfopyruvate

taurine

(R)-S-lactoylglutathione

Cr⁶⁺

Cr³⁺

Ca²⁺

Fe²⁺

H⁺

ammonium

trimethyl sulfonium

hydrogencarbonate

phosphate

diphosphate

chloride

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

cadaverine

choline

sn-glycero-3-phosphocholine

sn-glycero-3-phosphoethanolamine

allantoate

acetamide

(S)-(+)-allantoin

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

nicotinamide

(+)-7-epi-jasmonate

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

linoleoyl-CoA

dihomo γ-linolenoyl-CoA

(+)-7-epi-jasmonoyl-CoA

3'-dephospho-CoA

succinyl-CoA

acetyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

itaconyl-CoA

α-linolenoyl-CoA

phytenoyl-CoA

(S)-malyl-CoA

oleoyl-CoA

(Z)-15-tetracosenoyl-CoA

decanoyl-CoA

octanoyl-CoA

palmitoyl-CoA

stearoyl-CoA

pristanoyl-CoA

all-trans-retinyl palmitate

FAD

FMNH₂

FMN

(S)-NADHX

(R)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

demethylmenaquinol-8

(R)-lipoate

coenzyme A

7,8-dihydrofolate monoglutamate

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

riboflavin

nicotinate

thiamine

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxine

pyridoxamine

pyridoxal

all-trans-retinol

(S)-1-pyrroline-5-carboxylate

hydantoin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin

7,8-dihydropteroate

guanine

adenine

xanthosine

guanosine

adenosine

hypoxanthine

dIMP

dGTP

dATP

dITP

dGDP

dADP

GDP

ADP

IDP

XMP

IMP

GMP

AMP

GTP

ATP

ITP

XTP

dUDP

uracil

dTDP

dCTP

dUTP

UTP

CTP

dCMP

dCDP

UDP

CDP

orotate

dUMP

dTMP

CDP-choline

dTTP

5,6-dihydrouracil

5,6-dihydrothymine

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-muramate

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

dTDP-α-D-glucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2'-deoxycytidine

2'-deoxyuridine

thymidine

thymine

UMP

CMP

acrylonitrile

4-tyrosol

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

3-methoxy-4-hydroxyphenylglycol

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

benzaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

protocatechuate

salicylate

4-aminobenzoate

chorismate

succinate

fumarate

L-aspartate

(S)-malate

3-(carbamoylamino)-2-methylpropanoate

cis-aconitate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

(R)-lactate

(S)-lactate

pyruvate

formate

acetate

propanoate

decanoate

octanoate

3-oxoadipate

(15Z)-tetracosenoate

oleate

(3E,5Z)-tetradecadienoate

di-homo-γ-linolenate

linoleate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

α-linolenate

phytenate

pristanate

palmitate

stearate

(R)-pantoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

2-oxoglutarate

2-oxobutanoate

glyoxylate

4-(methylsulfanyl)-2-oxobutanoate

L-α-amino-ε-keto-pimelate

L-threo-3-phenylserine

L-serine

β-alanine

(R)-3-amino-2-methylpropanoate

glycine

L-alanine

L-proline

L-glutamine

L-leucine

D-glutamate

L-glutamate

L-histidine

L-lysine

L-arginine

L-asparagine

L-tyrosine

L-threonine

L-cysteine

L-tryptophan

L-phenylalanine

D-proline

D-alanine

D-aspartate

D-ornithine

L-aspartyl-4-phosphate

seleno-L-homocysteine

L-selenomethionine

3-phospho-L-serine

N-carbamoylglycine

N-formyl-L-methionine

N-acetyl-L-ornithine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

O-acetyl-L-homoserine

L-citrulline

L-isoleucine

L-valine

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-aspartate 4-semialdehyde

L-homoserine

O-succinyl-L-homoserine

L-glutamate-5-semialdehyde

O-phospho-L-homoserine

L-ornithine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-allo-threonine

L-methionine

L-cystathionine

L,L-diaminopimelate

methylglyoxal

diacetyl

glycolaldehyde

acetaldehyde

1-propanal

isobutanal

formaldehyde

(S)-lactaldehyde

phytenal

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

α-D-galactopyranose

β-D-galactopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

propan-1-ol

ethanol

methanol

phytol

(S)-propane-1,2-diol

myo-inositol

galactinol

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

(2E,6E)-farnesyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

vanillylamine

XXLG xyloglucan oligosaccharide

XLXG xyloglucan oligosaccharide

XLLG xyloglucan oligosaccharide

XXXG xyloglucan oligosaccharide

maltotriose

raffinose

maltotetraose

stachyose

maltoheptaose

maltohexaose

maltopentaose

α-maltose

allolactose

melibiose

sucrose

α-lactose

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose

3'-ketolactose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

GDP-α-D-mannose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

4-phospho-D-erythronate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose-1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

adenylo-succinate

pppGpp

ppGpp

5'-deoxyadenosine

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cyclic di-3',5'-guanylate