an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
aminoacrylate
2-dehydropantolactone
4-methyl-2-oxopentanoate
3-phenylpropanoate
α-ribazole
lipid A disaccharide (E. coli)
3-dehydro-2-deoxy-D-gluconate
3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate
dihydrolipoamide
enol-phenylpyruvate
7-carboxy-7-deazaguanine
cyclic-2,3-O-oxalyl-L-threonate
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
(2Z,4E)-2-hydroxy-6-oxonona-2,4-diene-1,9-dioate
3-deoxy-α-D-manno-2-octulosonate
(lipoyl)adenylate
N-succinyl-L,L-2,6-diaminopimelate
4-(2-aminophenyl)-2,4-dioxobutanoate
propanoyl phosphate
S-ribosyl-L-homocysteine
S-carboxymethyl-D-cysteine
2-phosphoglycolate
N-(2,3-dihydroxybenzoyl)-L-serine trimer
(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate
5-dehydro-4-deoxy-D-glucarate
m7GTP
8-amino-7-oxononanoate
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
2-dehydro-3-deoxy-L-rhamnonate
coproporphyrinogen III
dihydroxyacetone
ethyl-2-methylacetoacetate
(S)-4-amino-5-oxopentanoate
prenyl phosphate
preuroporphyrinogen
kynurenate
1,3-propanediol
β-nicotinate D-ribonucleotide
N-acetyl-DL-methionine
(R)-pantolactone
2-aminomalonate semialdehyde
N6-(D-psicosyl)-L-lysine
cyanate
N2-succinyl-L-glutamate 5-semialdehyde
3-dehydroshikimate
2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA
4-deoxy-4-formamido-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate
(enterobacterial common antigen)-undecaprenyl diphosphate
(S)-2,3,4,5-tetrahydrodipicolinate
glycolate
syringaldazine
L-dehydro-ascorbate
3-keto-L-gulonate 6-phosphate
hydroxypyruvate
(R)-1-aminopropan-2-ol
D-phenylhydantoin
L-quinate
selenophosphate
thiamine diphosphate
(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate
2-oxepin-2(3H)-ylideneacetyl-CoA
2-mercaptoethanol
5-phospho-α-D-ribose 1,2-cyclic phosphate
3-hydroxypropanoate
6-(glutathion-S-yl)-2-methylhydroquinone
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
acetyl phosphate
anthranilate
D-glycero-β-D-manno-heptose 1,7-bisphosphate
carbamoyl phosphate
dethiobiotin
(4S)-4-hydroxy-5-phosphooxypentane-2,3-dione
5,6-dimethylbenzimidazole
5-nitro benzisoxazole
L-histidinol phosphate
N-(5-phosphoribosyl)-anthranilate
oxalate
N2-succinyl-L-arginine
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
α-D-ribose 1,5-bisphosphate
thiamine triphosphate
shikimate 3-phosphate
(2R,3S)-3-isopropylmalate
3-hydroxy-5-phosphooxypentane-2,4-dione
3-keto-L-gulonate
4-phosphooxy-L-threonine
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
ADP-D-glycero-β-D-manno-heptose
D-tartrate
3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate
7,8-diaminopelargonate
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
2-iminoacetate
selenodiglutathione
histidinol
N-(2,3-dihydroxybenzoyl)-L-serine dimer
L-rhamnonate
glutathione disulfide
pimeloyl-CoA
S-acetyldihydrolipoamide
succinate semialdehyde
urea
MLPS
methyl-1,4-benzoquinol
(Z)-3-ureidoacrylate peracid
2-dehydropantoate
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
3-phosphooxypyruvate
core oligosaccharide-lipid A (E. coli K-12 core type)
2-deoxygluconate
(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2E)-3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)prop-2-enoate
γ-glutamyl-L-putrescine
2-carboxy-L-xylonolactone
hydrogen peroxide
2-hydroxyethyldisulfide
D-gluconate 6-phosphate
N-succinyl-2-amino-6-ketopimelate
cysteamine S-phosphate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
(S)-2-aceto-2-hydroxybutanoate
prephenate
S-adenosyl 3-(methylsulfanyl)propylamine
2-hydroxy-3-oxosuccinate
tartronate semialdehyde
2-deoxy-D-glucose 6-phosphate
α-D-ribose-1-methylphosphonate 5-phosphate
3,4-dihydroxyphenylacetyl-CoA
N7-methylguanosine 5'-phosphate
aminoacetone
1-deoxy-L-glycero-tetrulose 4-phosphate
(S)-ureidoglycolate
ethanolamine
(Z)-2-methyl-peroxyaminoacrylate
carboxyphosphate
3-oxopropanoate
3-deoxy-D-glycero-2,5-hexodiulosonate
N2-succinyl-L-ornithine
(R)-pantothenate
(2S)-2-amino-3-oxo-4-phosphooxybutanoate
pseudouridine
pseudouridine 5'-phosphate
tetrahydrothiophene 1-oxide
2-dehydro-3-deoxy-D-gluconate 6-phosphate
(2S)-2-isopropylmalate
4-aminobutanoate
1,6-anhydro-N-acetyl-β-muramate
5-amino-6-(D-ribitylamino)uracil
N-acetyl-β-D-mannosaminuronyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol
3-dehydroquinate
autoinducer 2
glutathionylspermidine
salicyl alcohol
L-arginino-succinate
2-succinylbenzoate
2-carboxymuconate
5-amino-6-(5-phospho-D-ribosylamino)uracil
4-(2'-carboxyphenyl)-4-oxobutyryl-CoA
thiamine phosphate
DNA without lesion
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA
5-enolpyruvoyl-shikimate 3-phosphate
5-phospho-β-D-ribosylamine
N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol
N-ethylsuccinimide
D-glycero-β-D-manno-heptose 1-phosphate
2-aminoacetaldehyde
γ-L-glutamyl 5-phosphate
N5-carboxyaminoimidazole ribonucleotide
N-(2,3-dihydroxybenzoyl)-L-serine
oxaloacetate
(R)-2,3-dihydroxy-3-methylpentanoate
N-carbamoyl-2-oxoglycine
phosphoenolpyruvate
(R)-4'-phosphopantothenoyl-L-cysteine
shikimate
1,4-dihydroxy-2-naphthoyl-CoA
lipid A-core 1-diphosphate
3-ureidoacrylate
2,3-didehydroadipyl-CoA
2-protocatechuoylphloroglucinolcarboxylate
(R)-4'-phosphopantothenate
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
carbon monoxide
2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
dehydroascorbate (bicyclic form)
histidinal
oxamate
O-phosphoethanolamine
(2,3-dihydroxybenzoyl)adenylate
UDP-4-deoxy-4-formamido-β-L-arabinopyranose
2-methyl-1,4-benzoquinone
2-dehydro-3-deoxy-D-gluconate
S-(acet-2-yl)-glutathione
2,5-didehydro-D-gluconate
3-mercaptopyruvate
(acetamidomethyl)phosphonate
5-aminolevulinate
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
4-(γ-L-glutamylamino)butanal
2-carboxy-L-threo-pentonate
H2
(L-threonylcarbamoyl)adenylate
lipoamide
2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA
N-acetyl-L-glutamate 5-semialdehyde
porphobilinogen
S-adenosyl-4-methylsulfanyl-2-oxobutanoate
L-tartrate
xanthine
4-(γ-L-glutamylamino)butanoate
(Z)-3-peroxyaminoacrylate
2-deoxy-D-glucose
methanetelluronate
adenosine 3',5'-bisphosphate
α-D-ribose-1-(methyl)phosphonate-5-triphosphate
5-dehydro-D-gluconate
(3R)-3,4-dihydroxybutanal
α-ribazole 5'-phosphate
lipid X
nicotinate adenine dinucleotide
citrate
glycerone phosphate
5-amino-6-(5-phospho-D-ribitylamino)uracil
2-keto-L-gulonate
α-D-glucosamine 1-phosphate
(Z)-2-methylureidoacrylate peracid
hydroxylamine
3-deoxy-D-manno-octulosonate 8-phosphate
1,2-dihydro-β-NADP
2,3-dioxo-L-gulonate
N2-succinylglutamate
4'-phosphopantetheine
2-(α-hydroxyethyl)thiamine diphosphate
(2E)-2-hydroxypenta-2,4-dienoate
tetrahydrothiophene
4-amino-4-deoxy-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate
2-dehydro-3-deoxy-D-arabinonate
4-amino-4-deoxychorismate
S-methyl-5'-thioadenosine
N-acetyl-D-muramate 6-phosphate
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
3-oxo-5,6-didehydrosuberyl-CoA semialdehyde
2-dehydro-3-deoxy-D-galactonate 6-phosphate
1,4-dihydroxy-2-naphthoate
ethyl-(2R)-methyl-(3S)-hydroxybutanoate
(3E)-2-oxopent-3-enoate
3-hydroxypropanal
4-pregnen-20,21-diol-3-one
3'-phosphoadenylyl-sulfate
2-C-methyl-D-erythritol 4-phosphate
pyrazine-2-carboxylate
N-carbamoyl-D-phenylglycine
2-isopropylmaleate
(S)-3-methyl-2-oxopentanoate
3-deoxy-D-arabino-heptulosonate 7-phosphate
(S)-4-hydroxy-2-oxopentanoate
2-hydroxycyclohepta-1,4,6-triene-1-carboxylate
hydroxyacetone
N-(4-aminobenzoyl)-L-glutamate
ammonia
6-phospho D-glucono-1,5-lactone
isopentenyl diphosphate
bisorganyltrisulfane
GMP-N-ε-(N-α-acetyl lysine methyl ester) 5'-phosphoramidate
imidazole acetol-phosphate
tetramethoxy azobismethylene quinine
5'-phosphoguanylyl(3'→5')guanosine
(E)-3-(methoxycarbonyl)pent-2-enedioate
orotidine 5'-phosphate
3-amino-1-hydroxyacetone 1-phosphate
2-keto-D-gluconate
glycerol 2-phosphate
quinolinate
(L-seryl)adenylate
(2S)-2-isopropyl-3-oxosuccinate
thioglycolate
2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
N,N-dimethyl-1,4-phenylenediamine
3-oxo-5,6-didehydrosuberyl-CoA
3-(3-hydroxyphenyl)propanoate
methyl-p-hydroquinone
N1-(5-phospho-β-D-ribosyl)glycinamide
O-acetyl-L-serine
adenosine 5'-phosphosulfate
D-erythro-imidazole-glycerol-phosphate
CO2
(S)-dihydroorotate
2-cyano-4-nitrophenol
N-acetylglutamyl-phosphate
oxalosuccinate
11-deoxycorticosterone
prenyl diphosphate
phosphocholine
S-formylglutathione
1-pyrroline
adenosine thiamine triphosphate
2-dehydro-3-deoxy-D-galactonate
3,4,4-trihydroxy-5-phosphooxypentan-2-one
acetoacetate
ADP-L-glycero-β-D-manno-heptose
D-xylonate
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
α-D-glucopyranosyl-diphosphoundecaprenol
γ-butyrobetaine
cyclic- 3,4-O-oxalyl-L-threonate
4-amino-2-methyl-5-pyrimidinemethanol
(O-carbamoyl)adenylate
isochorismate
lipid IVA
N-ethylmaleimide
2-oxopent-4-enoate
3-(2,3-dihydroxyphenyl)propanoate
tellurite
5-(methylsulfanyl)-α-D-ribose
H2O
α-D-glucosamine 6-phosphate
uroporphyrinogen-I
protoporphyrinogen IX
protoporphyrin IX
uroporphyrinogen-III
siroheme
protoheme
D-mannonate
D-gluconate
aldehydo-L-galactonate
D-altronate
D-galactonate
L-idonate
1-(β-D ribofuranosyl)nicotinamide
5-dehydro-4-deoxy-D-glucuronate
1-deoxy-D-xylulose
6-O-acetyl-α-D-glucopyranosyl-(1→4)-D-glucose
α-D-glucopyranose 1-phosphate
D-glyceraldehyde 3-phosphate
L-glyceraldehyde 3-phosphate
methyl β-D-glucoside 6-phosphate
N-monoacetylchitobiose 6'-phosphate
N,N'-diacetylchitobiose 6'-phosphate
α,α-trehalose 6-phosphate
UDP-α-D-galactose
methyl-β-D-galactoside
arbutin-6-phosphate
salicin 6-phosphate
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
UDP-α-D-glucose
ADP-α-D-glucose
dTDP-α-D-glucose
GDP-4-dehydro-α-D-rhamnose
GDP-α-D-mannose
GDP-β-L-fucose
ADP-D-ribose
dTDP-4-dehydro-β-L-rhamnose
dTDP-β-L-rhamnose
dTDP-4-acetamido-4,6-dideoxy-α-D-galactose
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
UDP-β-L-threo-pentapyranos-4-ulose
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine
UDP-4-amino-4-deoxy-β-L-arabinopyranose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-α-D-galactofuranose
UDP-α-D-glucuronate
UDP-N-acetyl-α-D-mannosamine
UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
UDP-N-acetyl-α-D-muramate
UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine
UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine
UDP-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-mannosaminuronate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
CMP-3-deoxy-β-D-manno-octulosonate
a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide
a mature peptidoglycan(n) (meso-DAP containing)
a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide
a mature peptidoglycan with L,D cross-links (meso-diaminopimelate containing)
a nascent peptidoglycan with L,D cross links (meso-diaminopimelate containing)
a mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)
a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)
a mature peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
D-sedoheptulose 1,7-bisphosphate
D-sedoheptulose 7-phosphate
4-phospho-D-erythronate
D-erythrose 4-phosphate
N6-(6-phospho-D-fructosyl)-L-lysine
5-phospho-α-D-ribose 1-diphosphate
α-D-galactose 1-phosphate
aldehydo-D-allose 6-phosphate
L-ascorbate 6-phosphate
keto-L-tagatose 6-phosphate
β-D-fructofuranose 6-phosphate
D-tagatofuranose 6-phosphate
D-fructose 6-phosphate
β-D-fructose 1,6-bisphosphate
D-tagatofuranose 1,6-bisphosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
β-D-mannopyranose 6-phosphate
α-D-mannopyranose 6-phosphate
6-deoxy-6-sulfo-D-fructose 1-phosphate
L-rhamnulose 1-phosphate
L-fuculose 1-phosphate
β-D-fructofuranose 1-phosphate
α-D-mannose 1-phosphate
N-acetyl-α-D-glucosamine 1-phosphate
β-D-glucopyranose 1-phosphate
D-ribulose 1-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
L-xylulose 5-phosphate
1-deoxy-D-xylulose 5-phosphate
D-xylulose 5-phosphate
aldehydo-D-ribose 5-phosphate
α-D-ribose 5-phosphate
β-D-ribose 5-phosphate
aldehydo-D-arabinose 5-phosphate
D-arabinofuranose 5-phosphate
L-ribulose 5-phosphate
D-ribulose 5-phosphate
D-allulose 6-phosphate
aldehydo-D-galacturonate
allolactose
α-lactose
α,α-trehalose
maltotetraose
maltoheptaose
maltopentaose
maltohexaose
maltotriose
colanic acid
α-Kdo-(2->4)-α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IVA
glucosyl-(heptosyl)3-glucosyluronate-Kdo2-lipid A-phosphate
α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A 1-diphosphate
heptosyl-Kdo2-lipid A
(heptosyl)2-Kdo2-lipid A
glucosyl-(heptosyl)2-Kdo2-lipid A
glucosyl-(heptosyl)2-Kdo2-lipid A-phosphate
glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate
glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate
galactosyl-glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate
galactosyl-(glucosyl)2-(heptosyl)3-Kdo2-lipid A-bisphosphate
galactosyl-(glucosyl)3-(heptosyl)3-Kdo2-lipid A-bisphosphate
heptosyl-Kdo2-lipid IVA
α-Kdo-(2→6)-lipid IVA
α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A
α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IVA
4'-α-L-Ara4N-α-Kdo-(2→4)-α-Kdo-(2→6)-[P4'-α-L-ara4N]-lipid A
octyl α-D-glucopyranoside
octyl β-1,6-D-galactofuranosyl-α-D-glucopyranoside
1,3,4-butanetriol
glycerol
D-sorbitol 6-phosphate
galactitol 1-phosphate
D-mannitol 1-phosphate
4-deoxy-L-threo-hex-4-enopyranuronate
β-L-rhamnopyranose
α-L-rhamnopyranose
β-L-fucopyranose
α-L-fucopyranose
β-D-fructofuranose
α-D-galactopyranose
β-D-galactopyranose
β-D-galactofuranose
α-D-galactofuranose
β-D-glucopyranose
α-D-glucopyranose
aldehydo-D-mannose
β-D-mannopyranose
β-D-ribopyranose
glycolaldehyde
aldehydo-D-ribose
α-D-ribofuranose
β-D-ribofuranose
D-glyceraldehyde
N-acetyl-β-D-mannosamine
N-acetyl-β-D-glucosamine
N-acetyl-α-neuraminate
N-acetyl-β-neuraminate
keto-D-fructose
6-deoxy-6-sulfo-D-fructose
L-fuculose
keto-L-rhamnulose
5-deoxy-D-ribose
D-xylulose
D-ribulose
L-xylulose
L-ribulose
β-L-lyxopyranose
D-glucono-1,5-lactone
D-galactono-1,4-lactone
(3S)-hydroxyadipyl-CoA
acetyl-CoA
acryloyl-CoA
phenylacetyl-CoA
3-hydroxybenzoyl-CoA
(2E,5Z)-tetradecenoyl-CoA
crotonobetainyl-CoA
3'-dephospho-CoA
formyl-CoA
γ-butyrobetainyl-CoA
L-carnitinyl-CoA
malonyl-CoA
oxalyl-CoA
succinyl-CoA
3-oxoadipyl-CoA
acetoacetyl-CoA
3-oxo-(5Z)-tetradecenoyl-CoA
(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA
propanoyl-CoA
palmitoleoyl-CoA
myristoyl-CoA
cis-vaccenoyl-CoA
(3Z)-dodec-3-enoyl-CoA
(2E)-dec-2-enoyl-CoA
trans-Δ2, cis-Δ4-decadienoyl-CoA
(2E)-dodec-2-enoyl-CoA
(S)-methylmalonyl-CoA
(R)-methylmalonyl-CoA
bromoacetate
3-chloro-D-alanine
3-(all-trans-octaprenyl)benzene-1,2-diol
hydrogen sulfide
oxygen
[FeO(OH)] monomer
L-homocysteine
4-methylphenol
(2E,6E)-farnesyl diphosphate
geranyl diphosphate
enterobactin
ferric-[N-(2,3-dihydroxybenzoyl)-L-serine trimer] complex
iron(III) dicitrate
ferric-enterobactin complex
(S)-ureidoglycine
hydrogen cyanide
(S)-2-hydroxyglutarate
(R)-2-hydroxyglutarate
sn-glycerol 3-phosphate
superoxide
hydroxyl radical
monodehydroascorbate radical
nitric oxide
3-(N-morpholino)propanal
benzaldehyde
phenylacetaldehyde
4-nitrobenzaldehyde
methylglyoxal
(R)-lactaldehyde
(S)-lactaldehyde
acetaldehyde
formaldehyde
menadione
diacetyl
methane
ethene
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
L-alanyl-glycine
glycyl-L-proline
glycyl-L-methionine
glycyl-L-glutamine
glycyl-L-asparagine
L-alanyl-L-threonine
L-alanyl-L-leucine
L-alanyl-L-histidine
L-alanyl-L-glutamine
L-alanyl-L-aspartate
glycyl-L-aspartate
glycyl-L-glutamate
L-alanyl-L-glutamate
L-alanyl-D-glutamate
L-cysteinylglycine
γ-L-glutamyl-L-cysteine
D-alanyl-D-alanine
L-methionyl-L-alanine dipeptide
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
2-octaprenylphenol
carbamate
L-kynurenine
L-α-amino-ε-keto-pimelate
L-citrulline
L-arginine
L-asparagine
L-cysteine
L-glutamine
L-glutamate
L-histidine
L-isoleucine
L-alanine
L-aspartate
L-leucine
L-lysine
L-methionine
L-phenylalanine
L-proline
L-serine
L-threonine
L-tryptophan
L-tyrosine
L-valine
glycine
3-sulfino-L-alanine
S-adenosyl-L-homocysteine
S-adenosyl-S-carboxymethyl-L-homocystein
D-cystine
L-cystine
N6-(D-fructosyl)-L-lysine
L-homoserine
L-aspartate 4-semialdehyde
L-glutamate-5-semialdehyde
L-ornithine
O-phospho-L-homoserine
O-succinyl-L-homoserine
S-adenosyl-L-methionine
L-allo-threonine
L-selenocysteine
meso-diaminopimelate
L-threo-3-phenylserine
D-methionine
D-alanine
D-cysteine
D-glutamate
D-serine
L-aspartyl-4-phosphate
L-cystathionine
L,L-diaminopimelate
N-carbamoyl-L-aspartate
N-acetyl-L-ornithine
N-methyl-L-tryptophan
L-2-amino-3-oxobutanoate
N-α-acetyl lysine methyl ester
4-hydroxy-L-threonine
S-methyl-L-methionine
N-acetyl-L-glutamate
N-acetyl-L-methionine
O-phospho-L-tyrosine
L-threonine 3-O-phosphate
3-phospho-L-serine
β-alanine
(R)-β-lysine
N-acetyl-D-mannosamine 6-phosphate
6-carboxy-5,6,7,8-tetrahydropterin
5,6,7,8-tetrahydromonapterin
FAD
FMN
riboflavin
FADH2
FMNH2
reduced riboflavin
prenylated FMNH2
6,7-dimethyl-8-(1-D-ribityl)lumazine
molybdopterin
6-(hydroxymethyl)-7,8-dihydropterin
7,8-dihydromonapterin
molybdopterin adenine dinucleotide
7,8-dihydroneopterin
7,8-dihydromonapterin triphosphate
7,8-dihydroneopterin 3'-phosphate
7,8-dihydroneopterin 3'-triphosphate
(7,8-dihydropterin-6-yl)methyl diphosphate
cyclic pyranopterin phosphate
bis(guanylyl molybdopterin) cofactor
bis(molybdenum cofactor)
guanylyl molybdenum cofactor
MoO2-molybdopterin cofactor
cytidylyl molybdenum cofactor
7,8-dihydropteroate
7,8-dihydrofolate monoglutamate
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
adenine
guanine
XMP
GMP
IMP
AMP
IDP
ADP
XDP
GDP
ITP
ATP
XTP
GTP
2'-deoxyguanosine 3'-monophosphate
2'-deoxyadenosine 3'-monophosphate
dGMP
dIMP
dAMP
dADP
dGDP
dITP
dATP
dGTP
hypoxanthine
2'-deoxyguanosine
2'-deoxyadenosine
2'-deoxyinosine
adenosine
guanosine
inosine
xanthosine
quercetin
(S)-1-pyrroline-5-carboxylate
preQ1
isoguanine
N1-ethyladenine
N1-methyladenine
N3-methylcytosine
thymine
uracil
cytosine
5,6-dihydrouracil
5,6-dihydrothymine
dUDP
CDP
orotate
cytidine 2',3'-cyclic monophosphate
dTMP
uridine 2'3'-cyclic monophosphate
CTP
dCMP
dUTP
cytidine-3'-monophosphate
dTDP
uridine 3'-monophosphate
UDP
dCDP
dUMP
cytidine 2'-monophosphate
uridine 2'-monophosphate
dTTP
UTP
dCTP
CMP
UMP
thymidine 3'-monophosphate
2'-deoxycytidine 3'-monophosphate
2'-deoxyuridine 3'-monophosphate
2'-deoxycytidine
2'-deoxyuridine
thymidine
cytidine
uridine
adenosylcobalamin
cob(I)alamin
sirohydrochlorin
precorrin-1
precorrin-2
phenylacetate
allantoate
nicotinamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
phosphoribulosylformimino-AICAR-phosphate
pyrazinamide
(S)-(+)-allantoin
(methyl)phosphonate
(aminomethyl)phosphonate
1-chloro-2,4-dinitrobenzene
4-nitrophenyl phosphate
4-nitrobenzyl alcohol
4-nitrophenol
2,4-dinitrophenyl-S-glutathione
(1E)-4-oxobut-1-ene-1,2,4-tricarboxylate
pyruvate
2-oxoglutarate
2-oxobutanoate
4-(methylsulfanyl)-2-oxobutanoate
glyoxylate
3-(4-hydroxyphenyl)pyruvate
3-phenyl-2-oxopropanoate
2,3-dihydroxybenzoate
3-hydroxybenzoate
4-aminobenzoate
1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate
1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
1,2-dicis-vaccenoyl-phosphatidate
1-palmitoyl-2-cis-vaccenoyl phosphatidate
(3E,5Z)-tetradecadienoate
(1E,3E)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate
(1Z,3Z)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate
(2R,3S)-2-methylisocitrate
(R)-glycerate
(S)-lactate
(R)-lactate
(S)-3-hydroxybutanoate
(R)-3-hydroxybutanoate
acetate
L-carnitine
(R)-pantoate
D-tagaturonate
formate
propanoate
cis-aconitate
cis-2-methylaconitate
trans-aconitate
(2S,3S)-2-methylcitrate
D-threo-isocitrate
chorismate
(2Z,4E,7E)-2-hydroxy-6-oxonona-2,4,7-triene-1,9-dioate
L-idarate
D-galactarate
D-glucarate
enol-oxaloacetate
fumarate
succinate
(R)-malate
(S)-malate
(4S)-4-hydroxy-2-oxoglutarate
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
2-methoxy-6-(all-trans-octaprenyl)phenol
myo-inositol
1D-myo-inositol 1-monophosphate
phytate
D-myo-inositol (1,2,4,5,6)-pentakisphosphate
D-myo-inositol (1,2,3,4,5)-pentakisphosphate
hydroquinone
3,4-dihydroxyphenylacetate
ethylene glycol
(R)-propane-1,2-diol
(S)-propane-1,2-diol
1-dodecanol
ethanol
methanol
L-ascorbate
nicotinate
thiamine
pyridoxal
pyridoxal 5'-phosphate
pyridoxamine
pyridoxamine 5'-phosphate
pyridoxine
pyridoxine 5'-phosphate
agmatine
cadaverine
aminopropylcadaverine
putrescine
spermidine
N1-acetylspermidine
4-aminobutanal
2-phenylethylamine
2-aminoprop-2-enoate
(2Z)-2-aminobut-2-enoate
2-iminopropanoate
glycine betaine
betaine aldehyde hydrate
betaine aldehyde
choline
dTDP-4-amino-4,6-dideoxy-α-D-galactose
methyl red
S-(hydroxymethyl)glutathione
glutathione
(R)-S-lactoylglutathione
dodecyl sulfate
sulfoquinovose
(2R)-3-sulfolactaldehyde
taurine
isethionate
3-(N-morpholino)propanesulfonate
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
5-(2-hydroxyethyl)-4-methylthiazole
4-methyl-5-(2-phosphooxyethyl)thiazole
cysteamine
methanethiol
thiocyanate
S-sulfanylglutathione
adenosine 2'-monophosphate
adenylo-succinate
guanosine 3'-monophosphate
5'-deoxyadenosine
8-oxo-GMP
8-oxo-GDP
adenosine 2',3'-cyclic monophosphate
1-(5-phospho-β-D-ribosyl)-ATP
cyclic-GMP
8-oxo-dGTP
pppGpp
8-oxo-GTP
ppGpp
8-oxo-dGDP
adenosine 3'-monophosphate
1-(5-phospho-β-D-ribosyl)-AMP
guanosine 2',3'-cyclic monophosphate
cyclic-AMP
8-oxo-dGMP
guanosine 2'-monophosphate
2-oxo-2'-deoxyadenosine
P1,P3-bis(5'-adenosyl) triphosphate
P1,P4-bis(5'-adenosyl) tetraphosphate
NAD+
NADP+
NADH
NADPH
(R)-NADPHX
(S)-NADPHX
cyclic di-3',5'-guanylate
5-hydroxy-CTP
2-hydroxy-dATP
2-hydroxy-dAMP
5-hydroxy-CMP
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
β-nicotinamide D-ribonucleotide
reduced β-nicotinamide D-ribonucleotide
2-iminobutanoate
2-iminosuccinate
adenosylcobalamin 5'-phosphate
adenosylcobinamide
adenosylcobinamide-GDP
adenosyl-cobinamide phosphate
cob(I)inamide
4-hydroxybenzoate
urate
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
2,3-dihydroxy-trans-cinnamate
3-hydroxy-trans-cinnamate
menadiol
3-demethylubiquinol-8
demethylmenaquinol-8
menaquinol-8
ubiquinol-8
2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol
6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol
coenzyme A
(R)-lipoate
molybdate
hydrogencarbonate
hydrogensulfite
nitrate
nitrite
OH-
thiosulfate
selenide
selenate
selenite
sulfite
sulfate
bromide
chloride
phosphate
triphosphate
diphosphate
Cr3+
Cr6+
Fe3+
Cu2+
Fe2+
Mg2+
Ni2+
Zn2+
Ag+
ammonium
Cu+
K+
H+
preQ0
DNA with lesion
DNA with lesion resolved through Rec-mediated pathway
a mismatched DNA base pair
a properly matched DNA base pair
cholate
(S)-NADHX
(R)-NADHX
(3E,5Z)-tetradeca-3,5-dienoyl-CoA
1-palmitoyl-sn-glycerol 3-phosphate
1-cis-vaccenoyl-sn-glycerol-3-phosphate
1-myristoyl-sn-glycerol 3-phosphate
1-palmitoyl-2-myristoyl phosphatidate
1,2-dimyristoyl-sn-glycerol 3-phosphate
3-octaprenyl-4-hydroxybenzoate
di-trans,octa-cis-undecaprenyl phosphate
di-trans,octa-cis-undecaprenyl diphosphate
all-trans-octaprenyl diphosphate
glycerophosphoserine
glycerophosphoglycerol
sn-glycero-3-phosphoethanolamine
S-methylglutathione
a mature peptidoglycan (meso-diaminopimelate containing)
a mature peptidoglycan strand with GlcNAc terminus
a mature peptidoglycan strand with 1,6-anhydro-MurNAc terminus
trans-2,3-dehydroadipyl-coA
keto-D-tagatose 6-phosphate
D-myo-inositol (2,3,4,5) tetrakisphosphate
D-myo-inositol (2,4,5) trisphosphate
D-myo-inositol (2,5) bisphosphate
1D-myo-inositol 2-monophosphate
1-methyl-dAMP
M-antigen (variant) monomer undecaprenyl diphosphate
core oligosaccharide-lipid A (E. coli K-12 core type) (no GlcNAc)
a peptidoglycan dimer (meso-diaminopimelate containing)
a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
maltose
2-O-(α-D-glucopyranosyl)-D-glycerate
1-(6-sulfo-α-D-quinovosyl)glycerol
6-sulfo-α-D-quinovose
ferroheme o
melibionate
(7Z)-hexadecenoyl-CoA
3-oxo-(9Z)-octadecenoyl-CoA
(S)-3-hydroxy-(9Z)-octadecenoyl-CoA
(2E,9Z)-octadecenoyl-CoA
(2E,9Z)-hexadecenoyl-CoA
(S)-3-hydroxy-(9Z)-hexadecenoyl-CoA
3-oxo-(11Z)-octadecenoyl-CoA
(S)-3-hydroxy-(11Z)-octadecenoyl-CoA
(2E,11Z)-octadecenoyl-CoA
(5Z)-tetradecenoyl-CoA
3-oxo-(7Z)-hexadecenoyl-CoA
(S)-3-hydroxy-(7Z)-hexadecenoyl-CoA
(2E,7Z)-hexadecenoyl-CoA
(3Z)-dec-3-enoyl-CoA
3-oxo-(5Z)-dodecenoyl-CoA
(S)-3-hydroxy-(5Z)-dodecenoyl-CoA
(2E,5Z)-dodecenoyl-CoA
(5Z)-dodecenoyl-CoA
3-oxo-(7Z)-tetradecenoyl-CoA
(S)-3-hydroxy-(7Z)-tetradecenoyl-CoA
(2E,7Z)-tetradecenoyl-CoA
(7Z)-tetradecenoyl-CoA
3-oxo-(9Z)-hexadecenoyl-CoA
(8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate
(2E,6E)-farnesyl phosphate
2,6-dimethoxyphenol
3,3',5,5'-tetramethoxydiphenoquinone
α-D-ribose-1-(2-N-acetamidomethylphosphonate) 5-phosphate
N-methylacetamide
α-D-ribose 1-(acetamidomethylphosphonate) 5-triphosphate
(2-aminoethyl)phosphonate
(2-acetamidoethyl)phosphonate
[(R)-1-aminoethyl]phosphonate
[(1R)-1-acetamidoethyl]phosphonate
[(S)-1-aminoethyl]phosphonate
[(1S)-1-acetamidoethyl]phosphonate
L,L-homocystine
N-acetyl-D-glucosamine-6-phosphate
lanthionine
L-djenkolate
5-oxo-L-proline
Fe3+-[N-(2,3-dihydroxybenzoyl)-L-serine] complex
S-sulfo-L-cysteine
biotin
biotinyl-5'-adenylate
4,5-seco-dopa
glyoxal
N8-acetylspermidine
Nω-phosphocreatine
creatine
Nα,Nε-diacetyl-lysyl-D-alanyl-D-alanine
Nα,Nε-diacetyl-lysyl-D-alanine
L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
2''-O-acetyl-ADP-ribose
N-acetyl-muramoyl-(L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine)
N-acetyl-muramoyl-(L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine)
toluquinol
2-oxoglutaramate
(S)-5-hydroxyisourate
(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline
glycyl-glycine
γ-glutamyl-p-nitroanilide
4-nitroaniline
γ-L-glutamyl-glycylglycine
prenol
pGp
D-homoserine
1-methyl-dATP
L-glyceraldehyde
palmitoleate
cis-vaccenate
oleate
oleoyl-CoA
L-malic semialdehyde
trimethylamine
CDP-glycerol
peptidylproline (ω = 180)
peptidylproline (ω = 0)
a partially deacetylated poly-β-1,6-N-acetyl-D-glucosamine I
a partially deacetylated poly-β-1,6-N-acetyl-D-glucosamine (fragment 1)
a partially deacetylated poly-β-1,6-N-acetyl-D-glucosamine (fragment 2)
6-decylubiquinol
6-decylubiquinone
cefoperazone
β-D-glucosyl-1-phosphoundecaprenol
ferrichrome
ferric coprogen
(S)-2-acetolactate
3-methyl-2-oxobutanoate
(2R)-2,3-dihydroxy-3-methylbutanoate