an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
(S)-2-acetolactate
(S)-2-aceto-2-hydroxybutanoate
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
orotidine 5'-phosphate
carbamoyl phosphate
(S)-dihydroorotate
3-phosphooxypyruvate
(R)-5-phosphomevalonate
(R)-mevalonate diphosphate
shikimate 3-phosphate
shikimate
3-dehydroquinate
3-deoxy-D-arabino-heptulosonate 7-phosphate
3-dehydroshikimate
5-(methylsulfanyl)-α-D-ribose
S-methyl-5'-thioadenosine
(R)-4'-phosphopantothenoyl-L-cysteine
(R)-4'-phosphopantothenate
N1-(5-phospho-β-D-ribosyl)glycinamide
5-phospho-β-D-ribosylamine
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
ethanolamine
3-methylbenzaldehyde
3-methylbenzyl alcohol
4-methylbenzyl alcohol
aminoacetone
O-D-alanyl-poly(ribitol phosphate)
poly(ribitol phosphate)
6-phospho D-glucono-1,5-lactone
5-hydroxyindole acetaldehyde
5-hydroxytryptophol
3-methoxy-4-hydroxyphenylglycolaldehyde
indole-3-glycol aldehyde
indole-3-glycol
isobutanol
3-methylbutanal
3-methylbutanol
2-methylbutanal
2-methylbutanol
2-phenylethanol
acetoacetate
carbon monoxide
3-methyl-2-oxobutanoate
4-amino-2-methyl-5-pyrimidinemethanol
3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate
7-epicholate
2-dehydro-3-deoxy-D-gluconate 6-phosphate
2-dehydro-3-deoxy-D-gluconate
N-succinyl-L,L-2,6-diaminopimelate
(R)-pantothenate
3-hydroxypropanal
1,3-propanediol
L-arginino-succinate
thiamine phosphate
2-dehydropantoate
(S)-3-methyl-2-oxopentanoate
(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate
isochorismate
3-[(4-amino-6-chloro-1,3,5-triazin-2-yl)amino]benzenesulfonate
2,2'-disulfonyl azobenzene
phthalate
glycolate
2-oleoylglycerol
methyl-1,4-benzoquinol
2-methyl-1,4-benzoquinone
(R)-2,3-dihydroxy-3-methylpentanoate
4-amino-4-deoxychorismate
DNA without lesion
4-coumaraldehyde
(E)-4-coumaroyl-CoA
coniferaldehyde
(lipoyl)adenylate
N5-carboxyaminoimidazole ribonucleotide
(2Z,4E)-2-hydroxyhexa-2,4-dienedioate
(indol-3-yl)pyruvate
N-carbamoylputrescine
5-enolpyruvoyl-shikimate 3-phosphate
2-iminoacetate
1,6-anhydro-N-acetyl-β-muramate
quinolinate
pseudouridine
H2
oxalosuccinate
2-amino-3-carboxymuconate-6-semialdehyde
ammonia
enol-phenylpyruvate
bisorganyltrisulfane
H2O
glutathione disulfide
hydrogen peroxide
CO2
acetyl phosphate
2-amino-2-deoxy-D-gluconate 6-phosphate
glycerone phosphate
N-acetyl-D-galactosamine 6-phosphate
D-galactosamine-6-phosphate
N-acetyl-D-muramate 6-phosphate
(4,5-dihydro-5-oxofuran-2-yl)-acetate
(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate
3-keto-β-D-galactose
α-D-glucosamine 1-phosphate
phosphoenolpyruvate
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
CDP-glycerol
ManNAc-GlcNAc-PP-undecaprenol
N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol
nicotinate adenine dinucleotide
xanthine
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
salicyl alcohol
(R)-mevalonate
pseudouridine 5'-phosphate
β-nicotinate D-ribonucleotide
D-gluconate 6-phosphate
prenyl diphosphate
isopentenyl diphosphate
coproporphyrinogen III
oxaloacetate
citrate
2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA
5-methylcytosine
4-methylumbelliferyl glucoside
4-hydroxybenzaldehyde
scopolin
cis-coumarinic acid-β-D-glucoside
thiamine diphosphate
2-(α-hydroxyethyl)thiamine diphosphate
S-acetyldihydrolipoamide
dihydrolipoamide
4'-phosphopantetheine
dADP
dGDP
5'-deoxyadenosine
2'-deoxyadenosine
2'-deoxyinosine
5-chloro-5-deoxyribose 1-phosphate
5'-chloro-5'-deoxyadenosine
ppGpp
pppGpp
dAMP
ADP
ATP
dGMP
2'-deoxyguanosine
AMP
hypoxanthine
GMP
IMP
XMP
adenylo-succinate
dATP
GTP
dGTP
GDP
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
GDP-α-D-glucose
GDP-α-D-mannose
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
dTDP-α-D-glucose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-N-acetyl-α-D-mannosamine
UDP-α-D-glucose
UDP-α-D-galactose
UDP-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-mannosaminuronate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
adenine
guanine
uracil
cytosine
thymine
preQ1
dCMP
dUMP
dTMP
dCDP
dUDP
dTDP
dTTP
dUTP
dCTP
CDP
UDP
β-nicotinamide D-ribonucleotide
UTP
CTP
CMP
UMP
NADP+
NAD+
NADPH
NADH
2'-deoxycytidine
2'-deoxyuridine
thymidine
xanthosine
guanosine
adenosine
inosine
cytidine
uridine
P1,P4-bis(5'-adenosyl) tetraphosphate
5-fluorouracil
5'-deoxy-5'-fluoroadenosine
5-fluorocytosine
D-altronate
D-gluconate
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
1-O-acetyl-α-maltose
3'-ketolactose
lotaustralin
arbutin-6-phosphate
salicin 6-phosphate
methyl β-D-glucoside 6-phosphate
taxiphyllin
linamarin
linustatin
neolinustatin
D-erythrose 4-phosphate
5-phospho-α-D-ribose 1-diphosphate
α-D-galactose 1-phosphate
α-D-mannose 1-phosphate
α-D-glucopyranose 1-phosphate
N-acetyl-α-D-glucosamine 1-phosphate
β-D-fructofuranose 1-phosphate
β-D-glucopyranose 1-phosphate
α-D-galactose 6-phosphate
β-D-galactose 6-phosphate
D-fructose 6-phosphate
β-D-fructofuranose 6-phosphate
β-D-fructose 1,6-bisphosphate
β-D-glucose 6-phosphate
α-D-glucose 6-phosphate
α-D-mannopyranose 6-phosphate
β-D-mannopyranose 6-phosphate
α-D-ribose-1-phosphate
5-fluoro-5-deoxy-D-ribose 1-phosphate
2-deoxy-α-D-ribose 1-phosphate
1-deoxy-D-xylulose 5-phosphate
D-xylulose 5-phosphate
aldehydo-D-ribose 5-phosphate
α-D-ribose 5-phosphate
β-D-ribose 5-phosphate
L-ribulose 5-phosphate
D-ribulose 5-phosphate
D-glyceraldehyde 3-phosphate
sucrose 6F-phosphate
N,N'-diacetylchitobiose 6'-phosphate
N-monoacetylchitobiose 6'-phosphate
β-D-cellobiose 6'-phosphate
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
a peptidoglycan dimer (S. aureus)
a peptidoglycan dimer (E. faeciums)
a peptidoglycan dimer (E. faecium, tetrapeptide)
a peptidoglycan dimer (mycobacteria)
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
a peptidoglycan dimer (meso-diaminopimelate containing)
a peptidoglycan with L,D cross-links (mycobacteria)
a peptidoglycan with D,D cross-links (mycobacteria)
a peptidoglycan with D,D cross-link (S. aureus)
a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)
a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)
β-D-fructofuranose
glycolaldehyde
aldehydo-D-ribose
β-D-ribopyranose
α-D-ribofuranose
β-D-ribofuranose
β-D-galactopyranose
α-D-galactopyranose
β-D-glucopyranose
α-D-glucopyranose
D-glyceraldehyde
L-glyceraldehyde
D-ribulose
L-ribulose
N-acetylmuramate
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetyl-β-neuraminate
N-acetyl-β-D-mannosamine
N-acetyl-β-D-glucosamine
glycerol
galactitol
XXXG xyloglucan oligosaccharide
β-D-cellobiose
melibiose
sucrose
α-lactose
stachyose
raffinose
XXLG xyloglucan oligosaccharide
XLXG xyloglucan oligosaccharide
XLLG xyloglucan oligosaccharide
aldehydo-D-galacturonate
4-methylumbelliferone
coumarin
scopoletin
trans,octacis-decaprenyl phosphate
mono-trans,octa-cis-decaprenyl diphosphate
(2E,6E)-farnesyl diphosphate
(3S)-linalool
(3R)-linalool
geranyl diphosphate
di-trans,octa-cis-undecaprenyl phosphate
di-trans,octa-cis-undecaprenyl diphosphate
3-octaprenyl-4-hydroxybenzoate
dioleoyl phosphatidate
1-oleoyl-2-lyso-glycerone phosphate
1-(oleoyl)-sn-glycero-3-phosphoethanolamine
1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate
1-oleoyl-sn-glycerol 3-phosphate
benzyl alcohol
myo-inositol
1D-myo-inositol 3-monophosphate
1D-myo-inositol 4-monophosphate
1D-myo-inositol 5-monophosphate
1D-myo-inositol 6-monophosphate
1D-myo-inositol 1-monophosphate
1D-myo-inositol 2-monophosphate
hydroquinone
3,4-dihydroxyphenylglycolaldehyde
3,4-dihydroxyphenylglycol
protocatechuate
2,3-dihydroxybenzoate
ethanol
propan-1-ol
phytol
butan-1-ol
methanol
cinnamaldehyde
methylglyoxal
benzaldehyde
4-methylbenzaldehyde
(4-hydroxyphenyl)acetaldehyde
phenylacetaldehyde
phytenal
1-propanal
isobutanal
butan-1-al
formaldehyde
acetaldehyde
(R)-acetoin
Reactive Blue 5
diacetyl
2-oxobutanoate
2-oxoglutarate
4-(methylsulfanyl)-2-oxobutanoate
glyoxylate
pyruvate
3-phenyl-2-oxopropanoate
4-aminobenzoate
butanoate
stearate
palmitate
oleate
orotate
L-carnitine
(R)-pantoate
acetate
D-tagaturonate
(S)-1-pyrroline-5-carboxylate
3-oxoadipate
formate
(R)-lactate
(S)-lactate
(R)-glycerate
3-carboxy-cis,cis-muconate
cis-aconitate
D-threo-isocitrate
chorismate
(3E)-2-oxohex-3-enedioate
succinate
L-aspartate
fumarate
(S)-malate
L-2-amino-3-oxobutanoate
N-carbamoyl-L-aspartate
3-phospho-L-serine
D-glutamate
D-aspartate
D-alanine
L-tyrosine
L-tryptophan
L-phenylalanine
L-cysteine
L-serine
L-asparagine
L-glutamine
L-threonine
glycine
L-glutamate
L-lysine
L-arginine
L-alanine
L-proline
L-leucine
β-alanine
L-valine
L-isoleucine
L-methionine
L-selenocysteine
L-ornithine
L,L-diaminopimelate
L-citrulline
S-adenosyl-L-methionine
S-adenosyl-L-homocysteine
L-homocysteine
L-glutamate-5-semialdehyde
meso-diaminopimelate
S-(4-hydroxy-nonenal-3-yl)-L-cysteine
Gro-P-ManNAc-GlcNAc-PP-undecaprenol
4-tyrosol
urate
coumarinate
3-chlorobenzaldehyde
3-chlorobenzyl alcohol
4-methylphenol
3-methoxy-4-hydroxyphenylglycol
preQ0
hydrogen cyanide
(2R)-2-hydroxy-2-methylbutanenitrile
2-hydroxy-2-methylpropanenitrile
7,8-dihydroneopterin 3'-phosphate
6-(hydroxymethyl)-7,8-dihydropterin
7,8-dihydroneopterin
7,8-dihydromonapterin
(7,8-dihydropterin-6-yl)methyl diphosphate
7,8-dihydroneopterin 3'-triphosphate
7,8-dihydropteroate
7,8-dihydrofolate monoglutamate
5,6,7,8-tetrahydrofolate
(6S)-5-formyl-tetrahydrofolate mono-L-glutamate
5-methyltetrahydropteroyl mono-L-glutamate
10-formyl-tetrahydrofolate mono-L-glutamate
5,10-methylenetetrahydropteroyl mono-L-glutamate
FMN
riboflavin
FAD
thiamine
nicotinate
nicotinamide
(R)-lipoate
coenzyme A
2-iminobutanoate
2-iminopropanoate
2-iminosuccinate
(R)-NADHX
(S)-NADHX
glycine betaine
D-glucono-1,5-lactone
(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA
(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA
(+)-7-epi-jasmonoyl-CoA
isobutanoyl-CoA
trans-feruloyl-CoA
acetyl-CoA
2-methylacetoacetyl-CoA
(S)-3-hydroxy-3-methylglutaryl-CoA
3'-dephospho-CoA
malonyl-CoA
oleoyl-CoA
acetoacetyl-CoA
3-oxopentanoyl-CoA
hexadecanedioyl-CoA
palmitoyl-CoA
stearoyl-CoA
butanoyl-CoA
propanoyl-CoA
(3R)-3-hydroxybutanoyl-CoA
(E)-cinnamoyl-CoA
crotonyl-CoA
(+)-7-epi-jasmonate
3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate
3α,7α,12β-trihydroxy-5β-cholan-24-oate
isocholate
3-dehydrocholate
cholate
glycocholate
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
5-amino-4-imidazolecarboxyamide
2-chloroacetate
trimethyl sulfonium
superoxide
sulfite
thiosulfate
hydrogensulfite
hydrogencarbonate
selenide
chloride
phosphate
diphosphate
Cr3+
Cr6+
Fe3+
Ca2+
Cu2+
Co2+
Zn2+
Cd2+
Mn2+
Fe2+
Mg2+
Na+
ammonium
H+
3-(methylsulfanyl)propanal
methionol
dimethyl sulfide
S-(hydroxymethyl)glutathione
glutathione
(R)-S-lactoylglutathione
3-sulfopyruvate
L-cysteate
4-methyl-5-(2-phosphooxyethyl)thiazole
5-(2-hydroxyethyl)-4-methylthiazole
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
thiocyanate
S-sulfanylglutathione
glycerophosphoglycerol
glycerophosphoserine
sn-glycero-3-phosphoethanolamine
sn-glycero-3-phosphocholine
(2Z)-2-aminobut-2-enoate
2-aminoprop-2-enoate
choline
agmatine
putrescine
spermidine
2-octaprenylphenol
5,10-methenyltetrahydrofolate mono-L-glutamate
S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine
N-acetyl-D-mannosamine 6-phosphate
α-D-glucosamine 6-phosphate
3-phospho-D-glyceroyl-phosphate
2,3-diphospho-D-glycerate
3-phospho-D-glycerate
2-phospho-D-glycerate
sn-glycerol 3-phosphate
hydrogen sulfide
oxygen
protochlorophyllide a
chlorophyllide a
3,8-divinyl protochlorophyllide a
protoporphyrin IX
Mg-protoporphyrin
uroporphyrinogen-III
magnesium-protoporphyrin IX 13-monomethyl ester
protoporphyrinogen IX
protoheme
131-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester
131-oxo-magnesium-protoporphyrin IX 13-monomethyl ester
phosphonoacetaldehyde
DNA with lesion
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
N-acetyl-L-glutaminyl-L-glutamine amide
N-acetyl-L-glutaminyl-L-glutamine
γ-L-glutamyl-L-cysteine
D-alanyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine