an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

lipid X

O-ureido-L-homoserine

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

N-succinyl-L,L-2,6-diaminopimelate

L-arginino-succinate

canavaninosuccinate

L-canavanine

(R)-mevalonate diphosphate

ethanolamine

(7R)-7-(4-carboxybutanamido)cephalosporanate

glutarate

4-aminobutanoate

(R)-pantothenate

2-amino-3-carboxymuconate-6-semialdehyde

1-piperideine 6-carboxylate

(S)-2-amino-6-oxohexanoate

2-aminomalonate semialdehyde

carbonic acid

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-6-(D-ribitylamino)uracil

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

hydroxyacetone

(E)-2-benzylidenesuccinyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

(E)-4-coumaroyl-CoA

2,3-didehydroadipyl-CoA

5-aminolevulinate

porphobilinogen

preuroporphyrinogen

(S)-4-amino-5-oxopentanoate

aminoacetone

γ-L-glutamyl 5-phosphate

formamide

4-imidazolone-5-propanoate

urocanate

coproporphyrinogen III

4-maleyl-acetoacetate

homogentisate

(2-hydroxyphenyl)acetate

N⁴-(β-N-acetyl-D-glucosaminyl)-L-asparagine

N-acetyl-β-glucosaminylamine

H₂

3-amino-1-hydroxyacetone 1-phosphate

nigerose

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

adenosine 3',5'-bisphosphate

3'-phosphoadenylyl-sulfate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

(S)-2,3,4,5-tetrahydrodipicolinate

prephenate

nicotinate adenine dinucleotide

creatinine

3-hydroxyanthranilate

lipid A disaccharide (E. coli)

lipid IV_A

enol-phenylpyruvate

orotidine 5'-phosphate

oxaloacetate

isopentenyl diphosphate

4-fumaryl-acetoacetate

acetoacetate

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

(indol-3-yl)acetamide

propionamide

prephytoene diphosphate

shikimate

shikimate 3-phosphate

1,6-anhydro-N-acetyl-β-muramate

2-maleylacetate

3-dehydroshikimate

carbamoyl phosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

N-Formyl-L-kynurenine

tryptamine

hypotaurine

(S)-ureidoglycolate

urea

5-carboxymethyl-2-hydroxymuconate

ammonia

2-dehydro-3-deoxy-D-gluconate

4-methylumbelliferyl glucoside

4-hydroxybenzaldehyde

scopolin

cis-coumarinic acid-β-D-glucoside

3-methylbenzyl alcohol

3-methylbenzaldehyde

4-methylbenzyl alcohol

isoquinoline

isoquinolin-2(1H)-one

glycerone phosphate

quinolinate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

phosphoenolpyruvate

3-deoxy-D-manno-octulosonate 8-phosphate

3-deoxy-α-D-manno-2-octulosonate

isochorismate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

1,4-dihydroxy-2-naphthoate

(1R,2R)-cyclohexa-3,5-diene-1,2-diol

pimeloyl-CoA

8-amino-7-oxononanoate

salicyl alcohol

methylsalicylate

hydrogen peroxide

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

3-phosphooxypyruvate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

4-phosphooxy-L-threonine

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

itaconate

histidinal

histidinol

L-histidinol phosphate

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

hydrogen selenide

O-acetyl-L-serine

2-keto-L-gulonate

L-gulono-1,4-lactone

α-D-glucosamine 1-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

4-acetamidobutanal

4-acetamidobutanoate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

DNA without lesion

(L-threonylcarbamoyl)adenylate

2-isopropylmaleate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

urea-1-carboxylate

N-(5-phosphoribosyl)-anthranilate

anthranilate

2-oleoylglycerol

1-deoxy-L-glycero-tetrulose 4-phosphate

6-phospho D-glucono-1,5-lactone

D-gluconate 6-phosphate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

2-oxoglutaramate

citrate

2-C-methyl-D-erythritol 4-phosphate

xanthine

2-dehydropantoate

3-methyl-2-oxobutanoate

(2S)-2-isopropylmalate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

prenyl diphosphate

4'-phosphopantetheine

CO₂

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

β-nicotinate D-ribonucleotide

β-D-ribosylnicotinate

glycolate

H₂O

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

L-dehydro-ascorbate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

4-oxoglutaramate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

2-keto-D-gluconate

2-dehydro-6-phospho-D-gluconate

2-iminoacetate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

S-ribosyl-L-homocysteine

autoinducer 2

selenodiglutathione

glutathioselenol

glutathione disulfide

4-amino-2-methyl-5-pyrimidinemethanol

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

enolaldehyde

2-dehydro-3-deoxy-D-gluconate 6-phosphate

hydroxypyruvate

acetyl phosphate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

(R)-5-phosphomevalonate

(R)-mevalonate

carbon monoxide

N⁵-carboxyaminoimidazole ribonucleotide

4-amino-4-deoxychorismate

oxalosuccinate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

1,4-dihydroxy-2-naphthoyl-CoA

β-L-arabinose 1-phosphate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

benzoylsuccinyl-CoA

N-acetyl-D-muramate 6-phosphate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

N-succinyl-2-amino-6-ketopimelate

(S)-dihydroorotate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

3-keto-β-D-galactose

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

(2E,6E)-farnesyl diphosphate

pristanate

L-cysteinylglycine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

2-iminosuccinate

2-iminopropanoate

2-iminobutanoate

DNA with lesion

phenylacetate

adenosylcobalamin

cob(I)alamin

Mg-protoporphyrin

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

3,8-divinyl protochlorophyllide a

magnesium-protoporphyrin IX 13-monomethyl ester

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

chlorophyllide a

protochlorophyllide a

cobalt-factor III

cobalt-sirohydrochlorin

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-5A

cobalt-precorrin-3

cobalt-precorrin-4

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

protoheme

hydrogen cyanide

N₂

nitrous oxide

uroporphyrinogen-I

coproporphyrinogen I

uroporphyrinogen-III

protoporphyrinogen IX

protoporphyrin IX

siroheme

oxygen

hydrogen sulfide

2-chloroacetate

sn-glycerol 3-phosphate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

N-acetyl-D-mannosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

1-oleoyl-2-lyso-glycerone phosphate

(R)-citramalate

5,10-methenyltetrahydrofolate mono-L-glutamate

superoxide

nitric oxide

monodehydroascorbate radical

L-homocysteine

4-methylphenol

N-acetyl-β-neuraminate

S-(hydroxymethyl)glutathione

dimethyl sulfide

3-sulfino-L-alanine

glutathione

methanethiol

S-sulfanylglutathione

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

3-sulfopyruvate

L-cysteate

taurine

trimethyl sulfonium

sulfate

sulfite

selenite

selenate

selenide

thiosulfate

nitrite

nitrate

hydrogensulfite

hydrogencarbonate

chloride

phosphonate

phosphate

triphosphate

diphosphate

Fe³⁺

ammonium

H⁺

Co²⁺

Mg²⁺

Cd²⁺

Fe²⁺

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

agmatine

putrescine

dehydrospermidine

spermidine

2-phenylethylamine

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

serotonin

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

fluoroacetaldehyde

fluoroacetate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

3-chlorobenzyl alcohol

3-chlorobenzaldehyde

allantoate

acetamide

(7R)-7 aminocephalosporanate

(S)-(+)-allantoin

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

nicotinamide

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

methylacrylyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-hydroxyisovaleryl-CoA

(E)-2-methylcrotonoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

2-trans-nonenoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

(E)-glutaconyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

(5Z)-tetradecenoyl-CoA

(2E,5Z)-tetradecenoyl-CoA

6-cis-tridecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

4-cis-undecenoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

6-trans-tridecenoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

4-trans-undecenoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

5-cis, 7-trans-tetradecadienoyl-CoA

2-trans, 5-cis, 7-trans-tetradecatrienoyl-CoA

linoleoyl-CoA

γ-linolenoyl-CoA

trans-caffeoyl-CoA

trans-feruloyl-CoA

isovaleryl-CoA

malonyl-CoA

2-methylacetoacetyl-CoA

3-methylcrotonyl-CoA

3-methylglutaconyl-CoA

itaconyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

isobutanoyl-CoA

succinyl-CoA

acetyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

(3S)-hydroxyadipyl-CoA

3'-dephospho-CoA

4-hydroxybenzoyl-CoA

phenylacetyl-CoA

2-methylbutanoyl-CoA

α-linolenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3R)-hydroxy-5-trans-dodecenoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(R)-methylmalonyl-CoA

(S)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E)-octadec-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

(S)-malyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(Z)-15-tetracosenoyl-CoA

cerotoyl-CoA

2-carboxy-cerotoyl-CoA

propanoyl-CoA

butanoyl-CoA

octanoyl-CoA

decanoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

3-oxoadipyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

3-oxooctanoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-palmitoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

all-trans-retinyl palmitate

cis-dienelactone

trans-dienelactone

D-galactono-1,4-lactone

L-galactono-1,4-lactone

L-homoserine lactone

PAI-1

HAI-1

PAI-1-2

VAI-1

VAI-1-2

AAI-1

D-glucono-1,5-lactone

FAD

FADH₂

FMNH₂

FMN

(S)-NADHX

(R)-NADHX

NADH

NADPH

NADP⁺

NAD⁺

menaquinol-8

menaquinol-6

menaquinol-7

demethylmenaquinol-6

demethylmenaquinol-7

demethylmenaquinol-8

coenzyme A

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

nicotinate

L-ascorbate

riboflavin

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxamine

pyridoxal

pyridoxine

all-trans-retinol

(S)-1-pyrroline-5-carboxylate

precorrin-2

precorrin-1

sirohydrochlorin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin 2',3'-cyclic phosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydropteroate

guanine

adenine

2'-deoxyadenosine

2'-deoxyguanosine

2'-deoxyinosine

adenosine

xanthosine

inosine

guanosine

hypoxanthine

dAMP

dGMP

dATP

dGTP

dITP

dADP

dGDP

dIDP

IDP

GDP

ADP

XMP

IMP

GMP

AMP

ITP

GTP

ATP

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

dUTP

dUDP

dUMP

dTMP

dTTP

orotate

UTP

UDP

dCMP

dCDP

uracil

CDP

CTP

dTDP

dCTP

uridine 3'-monophosphate

cytidine-3'-monophosphate

UDP-α-D-glucose

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-α-D-glucuronate

UDP-α-D-galacturonate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-β-L-arabinopyranose

UDP-N-acetyl-α-D-glucosamine

UDP-α-D-xylose

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

dTDP-α-D-glucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

uridine

cytidine

thymidine

2'-deoxyuridine

2'-deoxycytidine

UMP

CMP

preQ₁

baicalein

6,7-dehydrobaicalein

scopoletin

coumarin

4-methylumbelliferone

taxiphyllin

linustatin

neolinustatin

linamarin

lotaustralin

(indole-3-yl)acetonitrile

preQ₀

2-hydroxy-2-methylpropanenitrile

(2R)-2-hydroxy-2-methylbutanenitrile

2-[(1R,6S)-1,6-dihydroxycyclohexa-2,4-dien-1-yl]acetyl-coA

benzyl alcohol

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

urate

4-hydroxybenzoate

salicylaldehyde

benzaldehyde

4-methylbenzaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

6-hydroxy-2-(6-oxo-1-oxaspiro[2.5]octa-4,7-dien-2-yl)-1-benzofuran-3-one

6-hydroxy-2-[hydroxy-(4-hydroxyphenyl)methyl]-1-benzofuran-3-one

2-[hydroperoxy(4-hydroxyphenyl)methyl]-6-hydroxy-1-benzofuran-3-one

L-dopa

dopamine

catechol

protocatechuate

coumarinate

salicylate

4-aminobenzoate

benzoate

4-methylbenzoate

3-oxo-dodecanoate

3-oxooctanoate

L-2-aminoadipate

L-kynurenine

L-α-amino-ε-keto-pimelate

D-serine

L-serine

creatine

β-alanine

L-leucine

L-proline

L-glutamine

L-alanine

glycine

D-glutamate

L-glutamate

L-arginine

L-histidine

L-lysine

L-aspartate

L-tyrosine

L-asparagine

L-threonine

L-cysteine

L-tryptophan

L-phenylalanine

D-alanine

cis-4-hydroxy-D-proline

L-saccharopine

L-2-amino-3-oxobutanoate

L-aspartyl-4-phosphate

3-phospho-L-serine

sarcosine

formyl-L-isoglutamine

N-formimino-L-glutamate

N-(3-oxooctanoyl)-L-homoserine

N-(3-hydroxybutanoyl)-L-homoserine

N-(3-oxododecanoyl)-L-homoserine

N-(butyryl)-L-homoserine

N-(3-oxohexanoyl)-L-homoserine

N-(octanoyl)-L-homoserine

N-acetyl-L-ornithine

N-acetyl-L-citrulline

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

3-hydroxy-L-kynurenine

5-hydroxy-L-tryptophan

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L-citrulline

L-isoleucine

L-valine

1-aminocyclopropane-1-carboxylate

L-canaline

L-ornithine

L-homoserine

L-glutamate-5-semialdehyde

S-sulfo-L-cysteine

hypoglycin A

O-phospho-L-homoserine

O-succinyl-L-homoserine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-4-hydroxyglutamate semialdehyde

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-selenocysteine

L-methionine

L,L-diaminopimelate

L-cystathionine

L-isoglutamine

crocetin

chorismate

fumarate

succinate

(S)-malate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

cis-aconitate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

(R)-3-hydroxybutanoate

(S)-lactate

(R)-lactate

pyruvate

acetate

formate

propanoate

butanoate

octanoate

decanoate

3-oxohexanoate

3-oxoadipate

leukotriene-E4

leukotriene-D4

(15Z)-tetracosenoate

oleate

(3E,5Z)-tetradecadienoate

apo-4'-lycopenoate

linoleate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

phytenate

palmitate

(R)-pantoate

D-mannonate

D-gluconate

D-tagaturonate

aldehydo-D-galacturonate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

glyoxylate

2-oxoglutarate

2-oxobutanoate

methylglyoxal

diacetyl

glycolaldehyde

crocetin dialdehyde

formaldehyde

1-octanal

acetaldehyde

1-propanal

(R)-lactaldehyde

(S)-lactaldehyde

phytenal

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

α-D-galactopyranose

β-D-galactopyranose

L-sorbosone

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

ethanol

methanol

glycerol

D-sorbitol

(S)-propane-1,2-diol

scyllo-inosose

1-amino-1-deoxy-scyllo-inositol

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

6-O-α-mycolyl-trehalose 6-phosphate

α, α'-trehalose 6-α-mycolate

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

trehalose-cis-methoxy-mono-mycolate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

trehalose-trans-methoxy-mono-mycolate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

trehalose-cis-keto-mono-mycolate

6-O-trans-keto-mycolyl-trehalose 6-phosphate

trehalose-trans-keto-mono-mycolate

1-oleoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

geranyl diphosphate

geranylgeranyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-heptaprenyl diphosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

apo-4'-lycopenal

all-trans-phytoene

all-trans phytofluene

15-cis-phytoene

3-octaprenyl-4-hydroxybenzoate

betanidin

betanidin quinone

betalamate

miraxanthin V

ferric-enterobactin complex

iron(III) dicitrate

1-(β-D ribofuranosyl)nicotinamide

XXLG xyloglucan oligosaccharide

XLXG xyloglucan oligosaccharide

XLLG xyloglucan oligosaccharide

XXXG xyloglucan oligosaccharide

maltotriose

selaginose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

α-maltose

sucrose

allolactose

α,α-trehalose

α-lactose

β-D-cellobiose

keto-L-sorbose

keto-D-fructose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-mannosamine

N-acetyl-β-D-glucosamine

L-sorbosone 1,4-lactone

L-sorbosone 2,6-lactone

β-D-fructofuranose

D-xylulose

D-ribulose

L-ribulose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

3'-ketolactose

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (E. faecium, tetrapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

sucrose 6^F-phosphate

α,α-trehalose 6-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

ADP-α-D-glucose

GDP-α-D-glucose

GDP-α-D-mannose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

4-phospho-D-erythronate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-fuculose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

D-galactonate

aldehydo-L-galactonate

L-gulonate

adenosine 2',3'-cyclic monophosphate

guanosine 2',3'-cyclic monophosphate

cyclic-AMP

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

ppGpp

pppGpp

adenylo-succinate

guanosine 3'-monophosphate

adenosine 3'-monophosphate

reduced β-nicotinamide D-ribonucleotide

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

hypoglycin B