an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

2-amino-3-carboxymuconate-6-semialdehyde

autoinducer 2

D-gluconate 6-phosphate

(R)-synephrine

(4-hydroxyphenyl)acetate

octopamine

3-hydroxypropanoate

acetyl phosphate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

core oligosaccharide-lipid A (E. coli K-12 core type)

mercuriphenyl acetate

geranylgeranyl bacteriochlorophyllide a

urea

pyruvic oxime

4-aminobutanoate

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinyl-L-ornithine

N²-succinyl-L-arginine

dialurate

2-hydroxy-6-oxocyclohexane-1-carbonyl-CoA

cyclohexane-1-carbonyl-CoA

cyclohexane-1-carboxylate

3-oxopimeloyl-CoA

3-hydroxypimeloyl-CoA

6-oxocyclohex-1-ene-1-carbonyl-CoA

6-hydroxycyclohex-1-ene-1-carbonyl-CoA

cyclohex-1,5-diene-1-carbonyl-CoA

crotonate

hydrogenobyrinate

N6,N6,O-tridemethylpuromycin

N-acetyl-N6,N6,O-tridemethylpuromycin

4,8,12-trimethyltridecanoyl-CoA

3-oxopristanoyl-CoA

4-amino-4-deoxychorismate

N²-succinylglutamate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

2-oleoylglycerol

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

4-(γ-L-glutamylamino)butanal

4-(γ-L-glutamylamino)butanoate

vanillin

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

ammonia

hydroxylamine

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

DNA without lesion

glutathionylspermidine

trans-O-hydroxybenzylidenepyruvate

prephytoene diphosphate

mucus glycoprotein

O-palmitoylglycoprotein

benzoylsuccinyl-CoA

L-thyroxine phenolic β-D-glucuronide

L-thyroxine acyl β-D-glucuronide

5-hydroxytryptophol glucuronide

N-acetyl-serotonin glucuronide

cotinine

cotinine-glucuronide

nicotine-glucuronide

α-D-galactosyl-diphosphoundecaprenol

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

(S)-mandelate

(R)-mandelate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(E)-2-benzylidenesuccinyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

3-ureidopropanoate

creatinine

5-methoxytryptamine

5-methoxyindoleacetaldehyde

tryptamine

nigerose

1-phosphatidyl-myo-inositol

1-phosphatidyl-myo-inositol 2-mannose

3-deoxy-D-manno-octulosonate 8-phosphate

2-(α-hydroxyethyl)thiamine diphosphate

dihydrolipoamide

S-acetyldihydrolipoamide

(R)-pantothenate

S-ribosyl-L-homocysteine

pimeloyl-CoA

8-amino-7-oxononanoate

oxalosuccinate

cis-stilbene oxide

(1R,2R)-1,2-diphenylethane-1,2-diol

cis-coumarinic acid-β-D-glucoside

scopolin

4-hydroxybenzaldehyde

4-methylumbelliferyl glucoside

carbon monoxide

L-selenocystathionine

3-mercaptopyruvate

2-C-methyl-D-erythritol 4-phosphate

thiamine diphosphate

5-amino-6-(D-ribitylamino)uracil

2-phenylethanol

2-methylbutanol

2-methylbutanal

3-methylbutanol

3-methylbutanal

isobutanol

indole-3-glycol

indole-3-glycol aldehyde

5-hydroxytryptophol

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

N-carbamoylputrescine

γ-glutamyl-L-putrescine

3-oxopropanoate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

succinate semialdehyde

histidinal

histidinol

sym-homospermidine

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

4-phosphooxy-L-threonine

3-phosphooxypyruvate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

α-D-glucosamine 1-phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

acetoacetate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

(S)-3-methyl-2-oxopentanoate

ADP-D-glycero-β-D-manno-heptose

ADP-L-glycero-β-D-manno-heptose

γ-L-glutamyl 5-phosphate

nicotinate adenine dinucleotide

lipid X

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

5-aminolevulinate

hydroxypyruvate

adenosine 3',5'-bisphosphate

3'-phosphoadenylyl-sulfate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

(E)-3-(methoxycarbonyl)pent-2-enedioate

N-acetylglutamyl-phosphate

β-D-ribosylnicotinate

(S)-2,3,4,5-tetrahydrodipicolinate

porphobilinogen

preuroporphyrinogen

α-ribazole

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

carbamoyl phosphate

N-acetyl-L-glutamate 5-semialdehyde

5-enolpyruvoyl-shikimate 3-phosphate

4-methyl-3-oxoadipate

L-β-lysine

4-fumaryl-acetoacetate

4-maleyl-acetoacetate

5-oxo-L-proline

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

3-demethylubiquinol-6

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

shikimate 3-phosphate

anthranilate

3-hydroxyanthranilate

N-Formyl-L-kynurenine

N-succinyl-L,L-2,6-diaminopimelate

N-succinyl-2-amino-6-ketopimelate

shikimate

3-dehydroshikimate

2-maleylacetate

O-ureido-L-homoserine

pseudouridine 5'-phosphate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

ethanolamine

β-nicotinate D-ribonucleotide

quinolinate

5-(methylsulfanyl)-α-D-ribose

S-methyl-5-thio-α-D-ribose 1-phosphate

4'-phosphopantetheine

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

hydrogen selenide

O-acetyl-L-serine

xanthine

hydrogenobyrinate a,c-diamide

2-iminoacetate

N-ethylglycine

ethylamine

methylamine

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

4-imidazolone-5-propanoate

urocanate

coniferaldehyde

(25S)-3α,7α-dihydroxy-5β-cholestanoyl-CoA

4-hydroxy-2-nonenal

D-erythro-imidazole-glycerol-phosphate

(2-hydroxyphenyl)acetate

homogentisate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

N-(5-phosphoribosyl)-anthranilate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

3-deoxy-α-D-manno-2-octulosonate

enol-phenylpyruvate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

3-methyl-2-oxobutanoate

2-dehydropantoate

2,3-didehydroadipyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

methylsalicylate

salicyl alcohol

orotidine 5'-phosphate

(S)-dihydroorotate

L-gulono-1,4-lactone

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

lipid A disaccharide (E. coli)

lipid IV_A

prenyl diphosphate

isopentenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

H₂

N-methylhydantoin

dimethylsulfoniopropanoate

4-acetamidobutanal

4-acetamidobutanoate

D-glucurono-6,3-lactone

prop-2-ynal

propynoate

3,4-dihydroxyphenylacetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxyindole acetaldehyde

5-hydroxyindole acetate

imidazole acetaldehyde

4-imidazoleacetate

phosphoenolpyruvate

carbonic acid

coproporphyrinogen III

(R)-1-amino-2-propanol O-2-phosphate

citrate

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

hydrogen peroxide

glutathione disulfide

glycerone phosphate

2-phosphoglycolate

glycolate

oxaloacetate

imidazole acetol-phosphate

L-histidinol phosphate

prephenate

H₂O

CO₂

canavaninosuccinate

L-canavanine

L-arginino-succinate

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

L-dehydro-ascorbate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-hydroxyindole thiazolidine carboxylate

bisorganyltrisulfane

4-oxoglutaramate

α-D-galacturonate 1-phosphate

2-keto-D-gluconate

2-dehydro-6-phospho-D-gluconate

L-xylo-hex-3-ulono-1,4-lactone

formamide

S-methyl-5'-thioadenosine

pseudouridine

(S)-5-amino-3-oxohexanoate

(3S,5S)-3,5-diaminohexanoate

N⁵-carboxyaminoimidazole ribonucleotide

selenodiglutathione

glutathioselenol

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

(S)-4-amino-5-oxopentanoate

4-amino-2-methyl-5-pyrimidinemethanol

(2E,6E)-farnesyl diphosphate

pristanate

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

phenylacetate

ethylphosphate

adenosylcobalamin

cob(I)alamin

3-deacetyl-3-vinylbacteriochlorophyllide a

phyta-2,14-dienyl bacteriochlorophyllide a

bacteriochlorophyll a

phyta-2,10,14-trienyl bacteriochlorophyllide a

3-devinyl-3-(1-hydroxyethyl)chlorophyllide a

cobalt-factor III

cobalt-precorrin-3

cobalt-sirohydrochlorin

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-5A

cob(II)yrinate c-monoamide

cobyrinate

3-deacetyl-3-(1-hydroxyethyl)bacteriochlorophyllide a

bacteriochlorophyllide a

chlorophyllide a

protochlorophyllide a

cob(I)inamide

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobyrate

adenosylcobinamide

adenosyl-cobinamide phosphate

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

3,8-divinyl protochlorophyllide a

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

magnesium-protoporphyrin IX 13-monomethyl ester

Mg-protoporphyrin

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

cob(I)yrinate a,c-diamide

cob(II)yrinate a,c-diamide

protoheme

hydrogen cyanide

N₂

uroporphyrinogen-III

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrin IX

protoporphyrinogen IX

siroheme

(Z,Z)-biliverdin-IX α

S⁰

Hg⁰

hydrogen sulfide

oxygen

sn-glycerol 3-phosphate

2,3-diphospho-D-glycerate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

N-acetyl-D-mannosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

N-acetyl-β-neuraminate 9-phosphate

1-oleoyl-2-lyso-glycerone phosphate

CMP-N-acetyl-β-neuraminate

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

5,10-methenyltetrahydrofolate mono-L-glutamate

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

4-(2-iminoethyl)phenol

4-[(2Z)-2-(methylimino)ethyl]phenol

2-iminopropanoate

2-iminosuccinate

2-iminobutanoate

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

superoxide

monodehydroascorbate radical

hydroxyl radical

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

N-acetyl-β-neuraminate

S-(hydroxymethyl)glutathione

dimethyl sulfide

methionol

3-(methylsulfanyl)propanal

3-dimethylsulfoniopropionaldehyde

glutathione

thiocyanate

methanethiol

S-sulfanylglutathione

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

L-cysteate

3-sulfopyruvate

(R)-S-lactoylglutathione

trimethyl sulfonium

sulfate

sulfite

selenite

selenate

selenide

thiosulfate

OH^-

nitrite

nitrate

hydrogensulfite

hydrogencarbonate

molybdate

chloride

phosphate

triphosphate

diphosphate

Fe³⁺

H⁺

ammonium

K⁺

Fe²⁺

Co²⁺

Mg²⁺

Hg²⁺

glycine betaine

betaine aldehyde hydrate

betaine aldehyde

choline

4-[(Z)-2-aminoethenyl]phenol

4-[(E)-2-(methylamino)ethenyl]phenol

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

agmatine

N-acetylputrescine

spermidine

putrescine

cadaverine

3-acetylamino-4-hydroxybenzoate

3-acetylamino-4-hydroxybenzaldehyde

2-phenylethylamine

tyramine

3-amino-4-hydroxybenzoate

3-amino-4-hydroxybenzaldehyde

N-acetyl-serotonin

serotonin

glycerophosphoserine

glycerophosphoglycerol

sn-glycero-3-phosphoethanolamine

sn-glycero-3-phosphocholine

3,5,3'-triiodo-L-thyronine phenolic β-D-glucuronide

3,5,3'-triiodo-L-thyronine

3,5,3'-triiodo-L-thyronine acyl β-D-glucuronide

tetraiodothyroacetate ether glucuronide

tetraiodothyroacetate

tetraiodothyroacetate ester glucuronide

triiodothyroacetate ester glucuronide

3,3',5-triiodothyroacetate

triiodothyroacetate ether glucuronide

L-thyroxine

isopenicillin N

penicillin N

5-amino-4-imidazolecarboxyamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

nicotinamide

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

phenylacetyl-CoA

3-hydroxypropanoyl-CoA

acryloyl-CoA

isobutanoyl-CoA

(E)-glutaconyl-CoA

glutaryl-CoA

isovaleryl-CoA

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

(3R)-hydroxy-5-trans-dodecenoyl-CoA

(2E,5Z)-tetradecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3-methylcrotonyl-CoA

3-methylglutaconyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

(3E)-undec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

4-hydroxybenzoyl-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3'-dephospho-CoA

malonyl-CoA

succinyl-CoA

(25R)-3α,7α,12α-trihydroxy-5β-cholestanoyl-CoA

(25S)-3α,7α,12α-trihydroxy-5β-cholestanoyl-CoA

(25R)-3α,7α-dihydroxy-5β-cholestanoyl-CoA

3-hydroxyisovaleryl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

methylacrylyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

(3S)-citryl-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

(S)-3-aminobutanoyl-CoA

2-methylbutanoyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E)-octadec-2-enoyl-CoA

(2E)-dodec-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

phytanoyl-CoA

(S)-malyl-CoA

(3Z)-dodec-3-enoyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxypentanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

cerotoyl-CoA

2-carboxy-cerotoyl-CoA

(Z)-15-tetracosenoyl-CoA

butanoyl-CoA

propanoyl-CoA

hexanoyl-CoA

lauroyl-CoA

decanoyl-CoA

octanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

hexadecanedioyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxoadipyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

3-oxooctanoyl-CoA

3-oxododecanoyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

3-oxo-palmitoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

3-oxooctadecanoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

all-trans-retinyl palmitate

trans-dienelactone

cis-dienelactone

L-galactono-1,4-lactone

D-glucono-1,5-lactone

mycophenolic acid O-acyl-glucuronide

mycophenolic acid phenolic glucuronide

FADH₂

FAD

FMN

FMNH₂

(S)-NADHX

(R)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

ubiquinol-10

ubiquinol-7

ubiquinol-6

ubiquinol-8

ubiquinol-9

3-demethylubiquinol-10

3-demethylubiquinol-7

3-demethylubiquinol-8

3-demethylubiquinol-9

coenzyme A

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

thiamine

nicotinate

riboflavin

L-ascorbate

pyridoxal

pyridoxal 5'-phosphate

pyridoxamine

pyridoxamine 5'-phosphate

pyridoxine

pyridoxine 5'-phosphate

menadione

all-trans-retinol

(S)-1-pyrroline-5-carboxylate

precorrin-7

precorrin-8x

precorrin-6B

precorrin-6A

precorrin-5

precorrin-4

precorrin-3B

precorrin-3A

precorrin-1

precorrin-2

sirohydrochlorin

hydantoin

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydromonapterin

7,8-dihydroneopterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin 3'-phosphate

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

guanine

adenine

2'-deoxyguanosine

2'-deoxyadenosine

2'-deoxyinosine

guanosine

xanthosine

adenosine

inosine

hypoxanthine

dAMP

dGMP

dITP

dGTP

dATP

dIDP

dGDP

dADP

IDP

GDP

ADP

IMP

XMP

GMP

AMP

ITP

GTP

ATP

uridine 2'3'-cyclic monophosphate

cytidine 2',3'-cyclic monophosphate

cytosine

5,6-dihydrouracil

5,6-dihydrothymine

uridine 3'-monophosphate

cytidine-3'-monophosphate

dTTP

dCTP

dCMP

UTP

dTMP

dTDP

dUTP

dUMP

uracil

orotate

CTP

dUDP

UDP

dCDP

CDP

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-glucuronate

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-α-D-sulfoquinovopyranose

UDP-α-D-glucose

UDP-α-D-galactose

UDP-α-D-galacturonate

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-α-D-glucose

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

CDP-α-D-paratose

CDP-α-tyvelose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

CDP-4-dehydro-6-deoxy-α-D-glucose

CDP-α-D-glucose

cytidine

uridine

2'-deoxycytidine

2'-deoxyuridine

thymidine

thymine

CMP

UMP

isoguanine

N¹-methyladenine

N3-methylcytosine

N¹-ethyladenine

preQ₁

2-hydroxychromene-2-carboxylate

2',4,4',6'-tetrahydroxychalcone

scopoletin

coumarin

4-methylumbelliferone

neolinustatin

lotaustralin

linustatin

linamarin

taxiphyllin

preQ₀

2-hydroxy-2-methylpropanenitrile

(2R)-2-hydroxy-2-methylbutanenitrile

benzene

salicylaldehyde

3-hexaprenyl-4-hydroxybenzoate

4-hydroxybenzoate

4-tyrosol

urate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

normetanephrine

metanephrine

3-methoxy-4-hydroxyphenylglycol

vanillyl mandelate

benzaldehyde

phenylacetaldehyde

(4-hydroxyphenyl)acetaldehyde

indole

(indol-3-yl)acetaldehyde

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

menadiol

4-methylphenol

2,3-dihydroxybenzoate

(R)-noradrenaline

(R)-adrenaline

dopamine

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylacetate

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxymandelate

coumarinate

ferulate

salicylate

4-aminobenzoate

benzoate

L-kynurenine

L-α-amino-ε-keto-pimelate

L-serine

creatine

N-carbamoylsarcosine

β-alanine

(R)-3-amino-2-methylpropanoate

(S)-3-amino-2-methylpropanoate

L-proline

L-leucine

L-alanine

glycine

L-glutamine

D-glutamate

L-glutamate

L-histidine

L-lysine

L-arginine

L-aspartate

L-tyrosine

L-threonine

L-asparagine

L-cysteine

L-tryptophan

L-phenylalanine

D-aspartate

D-alanine

seleno-L-homocysteine

L-aspartyl-4-phosphate

sarcosine

N-carbamoylglycine

N-formyl-L-glutamate

formyl-L-isoglutamine

N-formyl-L-methionine

N-formimino-L-glutamate

N-acetyl-L-aspartate

N-acetyl-L-ornithine

N-acetyl-L-methionine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

3-hydroxy-L-kynurenine

O-acetyl-L-homoserine

L-threonine 3-O-phosphate

3-phospho-L-serine

L-citrulline

L-valine

L-isoleucine

L-glutamate-5-semialdehyde

O-succinyl-L-homoserine

L-homocysteine

L-ornithine

S-sulfo-L-cysteine

hypoglycin A

S-adenosyl-L-homocysteine

O-phospho-L-homoserine

S-adenosyl-L-methionine

L-aspartate 4-semialdehyde

L-homoserine

L-4-hydroxyglutamate semialdehyde

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-selenocysteine

L-allo-threonine

L-methionine

L-cystathionine

L,L-diaminopimelate

L-isoglutamine

chorismate

succinate

fumarate

(S)-malate

D-glucarate

3-(carbamoylamino)-2-methylpropanoate

trans-aconitate

cis-aconitate

(2R)-homocitrate

(2R,3S)-2-methylisocitrate

(2S,3S)-2-methylcitrate

cis-2-methylaconitate

cis-homoaconitate

D-threo-isocitrate

(R)-3-hydroxybutanoate

(R)-lactate

(S)-lactate

pyruvate

acetate

formate

propanoate

butanoate

decanoate

octanoate

(2E,6E)-farnesoate

3-oxoadipate

(15Z)-tetracosenoate

oleate

(3E,5Z)-tetradecadienoate

γ-linolenate

linoleate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

α-linolenate

phytenate

palmitate

mycophenolate

(R)-pantoate

D-gluconate

aldehydo-D-glucuronate

aldehydo-D-galacturonate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

glyoxylate

2-oxobutanoate

2-oxoglutarate

a coenzyme-A group

methylglyoxal

diacetyl

glycolaldehyde

(2E,6E)-farnesal

butan-1-al

isobutanal

1-propanal

formaldehyde

acetaldehyde

1-octanal

(S)-lactaldehyde

phytenal

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

butan-1-ol

propan-1-ol

methanol

ethanol

1-octanol

phytol

glycerol

myo-inositol

phytate

D-myo-inositol (1,2,4,5,6)-pentakisphosphate

1D-myo-inositol 2-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 4-monophosphate

1D-myo-inositol 3-monophosphate

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

6-O-trans-keto-mycolyl-trehalose 6-phosphate

trehalose-trans-keto-mono-mycolate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

trehalose-cis-keto-mono-mycolate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

trehalose-trans-methoxy-mono-mycolate

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

trehalose-cis-methoxy-mono-mycolate

6-O-α-mycolyl-trehalose 6-phosphate

α, α'-trehalose 6-α-mycolate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-oleoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

geranyl diphosphate

geranylgeranyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-decaprenyl diphosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

spheroidene

spheroiden-2-one

demethylspheroidene

all-trans neurosporene

15-cis-phytoene

all-trans-phytoene

1-hydroxyneurosporene

methoxyneurosporene

oleanolate

oleanolate 3 β-D-glucuronoside

phytyl diphosphate

di-trans,octa-cis-undecaprenol

3-nonaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

galactosyl-glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₃-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₂-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₂-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₂-Kdo₂-lipid A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

glucosyl-(heptosyl)₃-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₃-glucosyluronate-Kdo₂-lipid A-phosphate

heptosyl-Kdo₂-lipid A

(heptosyl)₂-Kdo₂-lipid A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

α-Kdo-(2→6)-lipid IV_A

trans-3'-hydroxycotinine

trans-3-hydroxycotinine-glucuronide

vanillylamine

(S)-nicotine

1-(β-D ribofuranosyl)nicotinamide

maltotriose

maltotetraose

maltoheptaose

maltohexaose

maltopentaose

α-maltose

sucrose

α,α-trehalose

β-D-cellobiose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

β-D-fructofuranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-ribulose-1,5-bisphosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

α,α-trehalose 6-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

ADP-α-D-glucose

GDP-α-D-mannose

GDP-4-dehydro-α-D-rhamnose

GDP-β-L-fucose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

D-sedoheptulose 1,7-bisphosphate

4-phospho-D-erythronate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-fuculose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

L-gulonate

aldehydo-L-galactonate

guanosine 2',3'-cyclic monophosphate

adenosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

guanosine 3'-monophosphate

pppGpp

ppGpp

cyclic-AMP

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

adenylo-succinate

5'-deoxyadenosine

8-oxo-GTP

8-oxo-dGTP

5-hydroxy-CTP

2-hydroxy-dATP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cyclic di-3',5'-guanylate

hypoglycin B