an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

S-ribosyl-L-homocysteine

autoinducer 2

2-oxopent-4-enoate

glutathione disulfide

3-maleylpyruvate

(salicyl)adenylate

5-aminopentanoate

(2R,4S)-2, 4-diaminopentanoate

(2R)-2-amino-4-oxopentanoate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

enol-phenylpyruvate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

picolinate

5,6-dihydroxyindole

(3E)-2-oxopent-3-enoate

(2E)-2-hydroxypenta-2,4-dienoate

4-oxoglutaramate

1-piperideine-2-carboxylate

1-deoxy-L-glycero-tetrulose 4-phosphate

1,4-dihydroxy-2-naphthoate

(R)-synephrine

octopamine

L-3-cyclohex-2'-enylalanine

3-[(1S)-cyclohex-3-en-1-yl)]-2-oxopropanoate

3-(cyclohexa-1,3-dien-1-yl)-2-oxopropanoate

dehydroprephenate

chlorate

dialurate

acetyl phosphate

2-maleylacetate

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

chlorite

(2S)-lactyl-2-diphospho-5'-guanosine

7,8-didemethyl-8-hydroxy-5-deazariboflavin

N-succinyl-L,L-2,6-diaminopimelate

salicyl alcohol

methylsalicylate

2-oleoylglycerol

glycolate

3-hydroxypropanoate

mercuriphenyl acetate

(4-hydroxyphenyl)acetate

carbon monoxide

(E)-2-benzylidenesuccinyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

nigerose

DNA without lesion

4-fumaryl-acetoacetate

carbonic acid

5-dehydro-4-deoxy-D-glucarate

2-dehydro-3-deoxy-D-gluconate

H₂

4-prenylphlorisobutyrophenone

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

2-succinylbenzoate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

isochorismate

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

(S)-2-amino-6-oxohexanoate

1-piperideine 6-carboxylate

(S)-5-amino-3-oxohexanoate

creatinine

coproporphyrinogen III

6-phospho D-glucono-1,5-lactone

D-gluconate 6-phosphate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

quinolinate

isopropylamine

ethanolamine

oxalate

2-iminoacetate

N-ethylglycine

methylamine

6-amino-2-oxohexanoate

dimethylsulfoniopropanoate

4-acetamidobutanal

4-acetamidobutanoate

D-glucurono-6,3-lactone

prop-2-ynal

propynoate

3,4-dihydroxyphenylacetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxyindole acetaldehyde

5-hydroxyindole acetate

imidazole acetaldehyde

4-imidazoleacetate

4-imidazolone-5-propanoate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

5,6-dimethylbenzimidazole

α-ribazole

α-ribazole 5'-phosphate

(R)-1-aminopropan-2-ol

(R)-1-amino-2-propanol O-2-phosphate

L-histidinol phosphate

4-amino-4-deoxychorismate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

3-phosphooxypyruvate

prephytoene diphosphate

adenosine 5'-phosphoselenate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-phospho-β-D-ribosylamine

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(4Z)-2-oxohept-4-enedioate

tryptamine

histidinal

histidinol

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

meso-tartrate

L-tartrate

2-hydroxy-3-oxosuccinate

prephenate

L-canavanine

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

5-amino-6-(D-ribitylamino)uracil

3-deoxy-D-arabino-heptulosonate 7-phosphate

shikimate

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

4'-phosphopantetheine

(R)-4'-phosphopantothenoyl-L-cysteine

(S)-dihydroorotate

4-methyl-3-oxoadipate-enol-lactone

4-methyl-3-oxoadipate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(E)-glutaconate

3-dehydroquinate

3-dehydroshikimate

2-isopropylmaleate

acetoacetate

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

N-acetyl-D-muramate 6-phosphate

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

dihydroxyacetone

2-amino-2-deoxy-D-gluconate 6-phosphate

urocanate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-aminolevulinate

porphobilinogen

preuroporphyrinogen

(S)-4-amino-5-oxopentanoate

selenophosphate

cis-coumarinic acid-β-D-glucoside

scopolin

4-hydroxybenzaldehyde

4-methylumbelliferyl glucoside

oxalosuccinate

N-(5-phosphoribosyl)-anthranilate

anthranilate

α-D-glucosamine 1-phosphate

pseudouridine 5'-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2-C-methyl-D-erythritol 4-phosphate

(R)-4'-phosphopantothenate

prenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-amino-3-carboxymuconate-6-semialdehyde

(2Z,4E)-2-amino-6-oxohexa-2,4-dienoate

(2E,4Z)-2-hydroxymuconate

(2Z,4E)-2-hydroxy-5-methyl-6-oxohexa-2,4-dienoate

2-hydroxy-6-oxohepta-2,4-dienoate

(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate

(2E,4Z)-2-hydroxy-6-oxohepta-2,4-dienoate

orotidine 5'-phosphate

β-nicotinate D-ribonucleotide

β-D-ribosylnicotinate

(indol-3-yl)acetamide

butyramide

propionamide

acrylamide

5-dehydro-D-gluconate

adenosine 5'-phosphosulfate

3'-phosphoadenylyl-sulfate

5-carboxymethyl-2-hydroxymuconate

(2R,3S)-2,3-dimethylmalate

5-oxo-L-proline

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

2,3-didehydroadipyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

(R)-pantothenate

glycerone phosphate

1-phosphatidyl-myo-inositol

1-phosphatidyl-myo-inositol 2-mannose

formamide

α-D-galactosyl-diphosphoundecaprenol

3-ureidopropanoate

isopentenyl diphosphate

nicotinate adenine dinucleotide

thiamine phosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

citrate

oxaloacetate

hydroxyatrazine

N-isopropylammelide

ethylamine

xanthine

(S)-5-hydroxyisourate

hydroxypyruvate

tartronate semialdehyde

arsenite

O-ureido-L-homoserine

canavaninosuccinate

L-arginino-succinate

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

carbamoyl phosphate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

1,4-dihydroxy-2-naphthoyl-CoA

3-oxopropanoate

4-aminobutanoate

urea

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

2-dehydropantoate

(+)-muconolactone

muconolactone

cis,cis-muconate

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

phosphoenolpyruvate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

(S)-3-methyl-2-oxopentanoate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

3-methyl-2-oxobutanoate

(2S)-2-isopropylmalate

hydrogen peroxide

succinate semialdehyde

CO₂

hydrogen selenide

O-acetyl-L-serine

H₂O

L-dopachrome

ammonia

(S)-ureidoglycolate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

4-amino-2-methyl-5-pyrimidinemethanol

N-methylhydantoin

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

pseudouridine

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

N⁵-carboxyaminoimidazole ribonucleotide

selenodiglutathione

glutathioselenol

(2E,6E)-farnesol

(2E,6E)-farnesyl diphosphate

hippurate

L-homocysteine

4-methylphenol

DNA with lesion

phenylacetate

ethylphosphate

adenosylcobalamin

cob(I)alamin

cob(II)yrinate c-monoamide

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-4

cobalt-precorrin-5A

cobyrinate

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

3,8-divinyl protochlorophyllide a

magnesium-protoporphyrin IX 13-monomethyl ester

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

chlorophyllide a

protochlorophyllide a

cobalt-precorrin-5B

cobalt-precorrin-6A

Mg-protoporphyrin

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

cobalt-precorrin-2

cobalt-precorrin-3

cobalt-sirohydrochlorin

cobalt-factor III

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

adenosylcobyrate

adenosylcobinamide

adenosyl-cobinamide phosphate

cob(I)yrinate a,c-diamide

cob(II)yrinate a,c-diamide

protoheme

hydrogen cyanide

uroporphyrinogen-I

protoporphyrinogen IX

protoporphyrin IX

uroporphyrinogen-III

siroheme

Hg⁰

oxygen

hydrogen sulfide

2-chloroacetate

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

2-O-(α-D-glucopyranosyl)-D-glycerate

2-[2-O-(α-D-mannopyranosyl)-(1→2)-α-D-glucopyranosyl]-3-phospho-D-glycerate

2-[2-O-(α-D-mannopyranosyl)-(1→2)-α-D-glucopyranosyl]-D-glycerate

2,3-diphospho-D-glycerate

2-O-(α-D-glucopyranosyl)-3-phospho-D-glycerate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2S)-2-phospholactate

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

(R)-citramalate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

5,10-methenyltetrahydrofolate mono-L-glutamate

3-(all-trans-octaprenyl)benzene-1,2-diol

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

(R)-2-hydroxyglutarate

superoxide

nitric oxide

2-iminopropanoate

4-(2-iminoethyl)phenol

4-[(2Z)-2-(methylimino)ethyl]phenol

2-iminosuccinate

2-iminobutanoate

S-(hydroxymethyl)glutathione

dimethyl sulfide

3-dimethylsulfoniopropionaldehyde

S-methyl-L-methionine

glutathione

thiocyanate

S-sulfanylglutathione

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

L-cysteate

3-sulfopyruvate

(2R)-3-sulfolactate

3-(N-morpholino)propanesulfonate

isethionate

1-butanesulfonate

(2R)-phospho-3-sulfolactate

3-sulfocatechol

trimethyl sulfonium

sulfate

sulfite

selenite

selenate

selenide

thiosulfate

nitrite

nitrate

hydrogensulfite

hydrogencarbonate

perchlorate

molybdate

chloride

phosphate

triphosphate

diphosphate

H⁺

Na⁺

ammonium

Mg²⁺

Co²⁺

Cu²⁺

Hg²⁺

Fe²⁺

glycine betaine

betaine aldehyde

2-aminoprop-2-enoate

4-[(Z)-2-aminoethenyl]phenol

4-[(E)-2-(methylamino)ethenyl]phenol

(2Z)-2-aminobut-2-enoate

agmatine

putrescine

tyramine

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

serotonin

sn-glycero-3-phosphoethanolamine

glycerophosphoserine

glycerophosphoglycerol

fluoroacetaldehyde

fluoroacetate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

chloroethylmalonyl-CoA

4-chloro-crotonyl-CoA

4-chloro-3-hydroxybutyryl-CoA

5-chloro-5-deoxy-D-ribose

5-chloro-5-deoxy-D-ribono-γ-lactone

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

allantoate

acetamide

(S)-(+)-allantoin

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

nicotinamide

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

androsta-1,4-diene-3,17-dione

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

acryloyl-CoA

3-hydroxypropanoyl-CoA

(2E,5Z)-tetradecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

salicyl-CoA

gentisyl-CoA

(S)-3-aminobutanoyl-CoA

formyl-CoA

oxalyl-CoA

(R)-2-hydroxyglutaryl-CoA

(E)-glutaconyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3-methylcrotonyl-CoA

3-methylglutaconyl-CoA

benzoyl-CoA

phenylacetyl-CoA

3'-dephospho-CoA

malonyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

3-hydroxyisovaleryl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

methylacrylyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

4-hydroxybenzoyl-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

isovaleryl-CoA

isobutanoyl-CoA

2-methylbutanoyl-CoA

2-methylacetoacetyl-CoA

succinyl-CoA

(3S)-citryl-CoA

acetyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(S)-malyl-CoA

(3R)-citramalyl-CoA

(3Z)-dodec-3-enoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

cerotoyl-CoA

2-carboxy-cerotoyl-CoA

butanoyl-CoA

propanoyl-CoA

hexanoyl-CoA

decanoyl-CoA

lauroyl-CoA

octanoyl-CoA

3-oxoadipyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

3-oxooctanoyl-CoA

3-oxododecanoyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

all-trans-retinyl palmitate

cis-dienelactone

trans-dienelactone

FADH₂

FAD

FMNH₂

FMN

(S)-NADHX

(R)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

caldariellaquinol

menaquinol-8

menaquinol-7

menaquinol-9

menaquinol-6

menaquinol-10

menaquinol-11

menaquinol-12

menaquinol-13

demethylmenaquinol-8

demethylmenaquinol-7

demethylmenaquinol-9

demethylmenaquinol-6

demethylmenaquinol-10

demethylmenaquinol-11

demethylmenaquinol-12

demethylmenaquinol-13

caldariellaquinone

molybdopterin

coenzyme A

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

oxidized coenzyme F₄₂₀-0

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

thiamine

nicotinate

riboflavin

pyridoxal

pyridoxamine

pyridoxine

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

menadione

all-trans-retinol

(S)-1-pyrroline-5-carboxylate

salinosporamide A

precorrin-6A

precorrin-3A

precorrin-5

precorrin-7

precorrin-8x

precorrin-6B

precorrin-3B

precorrin-4

precorrin-1

precorrin-2

sirohydrochlorin

hydantoin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

molybdopterin adenine dinucleotide

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin 2',3'-cyclic phosphate

cyclic pyranopterin phosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin 3'-triphosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

adenine

guanine

2'-deoxyinosine

2'-deoxyguanosine

2'-deoxyadenosine

inosine

xanthosine

adenosine

guanosine

hypoxanthine

dAMP

dGMP

dITP

dGTP

dATP

dIDP

dGDP

dADP

IDP

GDP

ADP

XMP

IMP

GMP

AMP

ITP

GTP

ATP

dCMP

UTP

dCTP

dTDP

uracil

CTP

orotate

uridine 3'-monophosphate

cytidine-3'-monophosphate

dUTP

5,6-dihydrothymine

5,6-dihydrouracil

dTMP

dUMP

dUDP

dCDP

CDP

UDP

dTTP

UDP-α-D-sulfoquinovopyranose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-galactose

UDP-α-D-glucose

UDP-α-D-glucuronate

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

dTDP-α-D-glucose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

uridine

cytidine

2'-deoxycytidine

thymidine

2'-deoxyuridine

thymine

CMP

UMP

preQ₁

coumarin

scopoletin

4-methylumbelliferone

preQ₀

neolinustatin

lotaustralin

linustatin

linamarin

taxiphyllin

(indole-3-yl)acetonitrile

propionitrile

3-cyanopyridine

acrylonitrile

2-hydroxy-2-methylpropanenitrile

(2R)-2-hydroxy-2-methylbutanenitrile

n-butyronitrile

actinorhodin intermediate

actinorhodin

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

benzene

2-[(1R,6S)-1,6-dihydroxycyclohexa-2,4-dien-1-yl]acetyl-coA

cyanuric acid

4-hydroxybenzoate

urate

salicylaldehyde

atrazine

vanillyl mandelate

(4-hydroxyphenyl)acetaldehyde

benzaldehyde

(indol-3-yl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

menadiol

phenol

3,4-dihydroxyphenylacetate

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxymandelate

L-dopa

dopamine

protocatechuate

4-methylcatechol

catechol

3-methylcatechol

coumarinate

salicylate

4-aminobenzoate

benzoate

L-α-amino-ε-keto-pimelate

L-2-aminoadipate

L-serine

creatine

N-carbamoylsarcosine

β-alanine

(R)-3-amino-2-methylpropanoate

(S)-3-amino-2-methylpropanoate

L-alanine

L-proline

glycine

L-glutamine

L-leucine

D-glutamate

L-glutamate

N^ω-hydroxy-L-arginine

L-arginine

L-histidine

L-lysine

L-aspartate

L-tyrosine

L-cysteine

L-asparagine

L-threonine

L-phenylalanine

L-tryptophan

D-ornithine

D-proline

D-lysine

D-alanine

D-aspartate

seleno-L-homocysteine

L-selenomethionine

L-aspartyl-4-phosphate

L-threonine 3-O-phosphate

3-phospho-L-serine

sarcosine

N-carbamoylglycine

formyl-L-isoglutamine

N-formyl-L-glutamate

N-formimino-L-glutamate

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-acetyl-L-methionine

N-acetyl-L-glutamate

N⁶-hydroxy-L-lysine

N-carbamoyl-L-aspartate

5-hydroxy-L-tryptophan

O-acetyl-L-homoserine

L-citrulline

L-valine

L-isoleucine

L-4-hydroxyglutamate semialdehyde

L-glutamate-5-semialdehyde

L-aspartate 4-semialdehyde

hypoglycin A

L-canaline

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

O-succinyl-L-homoserine

L-ornithine

L-homoserine

O-phospho-L-homoserine

S-sulfo-L-cysteine

meso-diaminopimelate

L-selenocysteine

L-methionine

L-isoglutamine

L-2,4-diaminobutanoate

L,L-diaminopimelate

L-cystathionine

crocetin

chorismate

fumarate

succinate

(S)-malate

D-galactarate

D-glucarate

3-(carbamoylamino)-2-methylpropanoate

(2R,3S)-2-methylisocitrate

3-carboxy-cis,cis-muconate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

(2S,3S)-2-methylcitrate

cis-2-methylaconitate

cis-aconitate

D-threo-isocitrate

gentisate

(R)-3-hydroxybutanoate

(S)-lactate

(R)-lactate

pyruvate

acetate

formate

propanoate

butanoate

octanoate

(2E,6E)-farnesoate

3-oxoadipate

(3E,5Z)-tetradecadienoate

apo-4'-lycopenoate

phytenate

palmitate

D-mannonate

D-gluconate

(R)-pantoate

D-tagaturonate

aldehydo-D-galacturonate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

glyoxylate

2-oxobutanoate

2-oxoglutarate

a coenzyme-A group

methylglyoxal

diacetyl

acetone

dopaquinone

6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone

3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone

(2E,6E)-farnesal

crocetin dialdehyde

3-(N-morpholino)propanal

glycolaldehyde

1-octanal

acetaldehyde

butan-1-al

formaldehyde

1-propanal

(S)-lactaldehyde

(R)-lactaldehyde

phytenal

D-glyceraldehyde

L-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

β-D-ribopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

butan-1-ol

methanol

ethanol

phytol

glycerol

(3R)-linalool

(3S)-linalool

myo-inositol

scyllo-inosose

1D-myo-inositol 2-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 4-monophosphate

1D-myo-inositol 3-monophosphate

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

1-oleoyl-sn-glycerol 3-phosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

geranyl diphosphate

all-trans-undecaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-octaprenyl diphosphate

geranylgeranyl diphosphate

all-trans-heptaprenyl diphosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

apo-4'-lycopenal

15-cis-phytoene

phytyl diphosphate

3-octaprenyl-4-hydroxybenzoate

5-deoxy-dihydrokalafungin

(S)-DNPA

2-((1R,3S),-1',9'-dihydroxy-1'-methyl-10'-oxo-3',4',5',10'-tetrahydro-1H-benzo[g]isochromen-3'-yl)acetate

(S)-4-(3'-acetyl-5'-hydroxy-4'-oxo-1',4'-dihydronapthalen-2'-yl)-3-hydroxybutanoate

4-(3'-acetyl-5'-hydroxy-4'-oxo-1',4'-dihydronapthalen-2'-yl)-3-oxobutanoate

phlorisovalerophenone

deoxyhumulone

4-prenylphlorisovalerophenone

deoxycohumulone

leucodopachrome

betalamate

miraxanthin V

dihydrokalafungin

1-(β-D ribofuranosyl)nicotinamide

maltotriose

maltotetraose

maltoheptaose

maltohexaose

maltopentaose

α-maltose

sucrose

α,α-trehalose

β-D-cellobiose

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

β-L-fucopyranose

α-L-fucopyranose

β-D-fructofuranose

L-fuculose

D-xylulose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

α,α-trehalose 6-phosphate

GDP-α-D-glucose

GDP-4-dehydro-α-D-rhamnose

GDP-α-D-mannose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

4-phospho-D-erythronate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

α-D-galactose 6-phosphate

β-D-galactose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-fuculose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

D-altronate

L-idonate

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

L-cysteinylglycine

D-alanyl-D-alanine

5'-deoxyadenosine

adenylo-succinate

pppGpp

ppGpp

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

adenosine 3'-monophosphate

guanosine 3'-monophosphate

reduced β-nicotinamide D-ribonucleotide

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cyclic di-3',5'-guanylate

hypoglycin B