an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

3-methylbutanal

(R)-pantothenate

4-phosphooxy-L-threonine

isochorismate

glycolate

(R)-2,3-dihydroxy-3-methylpentanoate

carbon monoxide

5-phospho-β-D-ribosylamine

nigerose

CO₂

prephytoene diphosphate

5-methoxyindoleacetaldehyde

5-hydroxytryptophol

indole-3-glyoxal

N-methylhydantoin

6-phospho D-glucono-1,5-lactone

N-acetyl-L-glutamate 5-semialdehyde

5-aminolevulinate

quinolinate

D-gluconate 6-phosphate

(2S)-2-isopropyl-3-oxosuccinate

isobutanol

1,4-dihydroxy-2-naphthoyl-CoA

lipid A disaccharide (E. coli)

2'-hydroxygenistein

2-maleylacetate

3-methoxy-4-hydroxyphenylglycolaldehyde

3-methylbutanol

formamide

3-demethylubiquinol-6

L-β-lysine

2,3-dehydrokievitone

5-amino-6-(5-phospho-D-ribitylamino)uracil

imidazole acetol-phosphate

tryptamine

H₂O

adenosine 5'-phosphosulfate

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

5-amino-6-(D-ribitylamino)uracil

porphobilinogen

(E)-2-benzylidenesuccinyl-CoA

O-acetyl-L-serine

γ-L-glutamyl 5-phosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

shikimate

5-amino-6-(5-phospho-D-ribosylamino)uracil

ammonia

N²acetyl-L-2-aminoadipate 6-phosphate

carbonic acid

mercuriphenyl acetate

lipoamide

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

shikimate 3-phosphate

imidazole acetaldehyde

4-fumaryl-acetoacetate

D-erythro-imidazole-glycerol-phosphate

4-imidazoleacetate

2-methylbutanal

7,8-diaminopelargonate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

N²-acetyl-L-2-aminoadipate semialdehyde

(S)-3-methyl-2-oxopentanoate

S-ribosyl-L-homocysteine

5-hydroxyindole acetate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(R)-mevalonate diphosphate

(+)-exo-5-hydroxycamphor

3-dehydroshikimate

α-D-glucosamine 1-phosphate

β-nicotinate D-ribonucleotide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N-(5-phosphoribosyl)-anthranilate

phosphoenolpyruvate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

3,4-dihydroxyphenylacetaldehyde

canavaninosuccinate

autoinducer 2

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

dimethylsulfoniopropanoate

3-amino-1-hydroxyacetone 1-phosphate

succinate semialdehyde

hydrogen peroxide

oxaloacetate

prenyl diphosphate

4-acetamidobutanal

3-dehydroquinate

H₂

3-oxo-5,6-didehydrosuberyl-CoA

4-acetamidobutanoate

(+)-bornane-2,5-dione

3-phosphooxypyruvate

nicotinate adenine dinucleotide

indole-3-glycol

(S)-2,3-dihydrodipicolinate

4-methyl-2-oxopentanoate

pimelate

pseudouridine

4-aminobutanoate

acetyl phosphate

(R)-5-phosphomevalonate

anthranilate

3-aminopropanal

glycerone phosphate

(R)-mevalonate

hydrogen selenide

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

histidinal

5-methoxytryptamine

dethiobiotin

(R)-4'-phosphopantothenoyl-L-cysteine

(4Z)-2-oxohept-4-enedioate

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

L-arginino-succinate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

(S)-2-aceto-2-hydroxybutanoate

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

pimeloyl-CoA

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-(methylsulfanyl)-ribulose 1-phosphate

(S)-2,3,4,5-tetrahydrodipicolinate

adenosine 3',5'-bisphosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

S-methyl-5'-thioadenosine

N-ethylglycine

N-succinyl-2-amino-6-ketopimelate

L-canavanine

xanthine

(2R,3S)-3-isopropylmalate

(S)-2-amino-6-oxohexanoate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

enol-phenylpyruvate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-hydroxyindole thiazolidine carboxylate

N-benzylformamide

4-oxoglutaramate

1-piperideine 6-carboxylate

aminoacetone

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

N⁵-carboxyaminoimidazole ribonucleotide

2-oxoadipate

(R)-synephrine

(4-hydroxyphenyl)acetate

octopamine

2-amino-3-carboxymuconate-6-semialdehyde

N-acetyl-D-muramate 6-phosphate

1,6-anhydro-N-acetyl-β-muramate

3'-phosphoadenylyl-sulfate

oxalosuccinate

4-amino-2-methyl-5-pyrimidinemethanol

2-phosphoglycolate

dihydrolipoamide

carbamoyl phosphate

N¹-(5-phospho-β-D-ribosyl)glycinamide

N-succinyl-L,L-2,6-diaminopimelate

L-histidinol phosphate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

pseudouridine 5'-phosphate

8-amino-7-oxononanoate

N²-succinylglutamate

4-imidazolone-5-propanoate

2,3-didehydroadipyl-CoA

indole-3-ketol

3-methyl-2-oxobutanoate

(S)-dihydroorotate

(S)-2-acetolactate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

creatinine

(lipoyl)adenylate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

indole-3-glycol aldehyde

acrylate

methylamine

S-acetyldihydrolipoamide

dihydroxyacetone

hydroxypyruvate

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

N-acetylglutamyl-phosphate

citrate

2-dehydropantoate

4'-phosphopantetheine

5-enolpyruvoyl-shikimate 3-phosphate

urocanate

(2S)-2-isopropylmalate

lipid IV_A

leukotriene-E4

lipid X

3-amino-3-deoxy-D-fructose 6-phosphate

cis-coumarinic acid-β-D-glucoside

(S)-4-amino-5-oxopentanoate

isopentenyl diphosphate

2-C-methyl-D-erythritol 4-phosphate

orotidine 5'-phosphate

1-deoxy-1-imino-D-erythrose 4-phosphate

homogentisate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

2-phenylethanol

histidinol

3-(4-hydroxyphenyl)-3-oxo-propionyl-CoA

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

(S)-5-amino-3-oxohexanoate

1,4-dihydroxy-2-naphthoate

1-deoxy-L-glycero-tetrulose 4-phosphate

preuroporphyrinogen

O-ureido-L-homoserine

2-succinylbenzoate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

prephenate

(E)-4-coumaroyl-CoA

acrylamide

(2-hydroxyphenyl)acetate

2-isopropylmaleate

ethylamine

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

acetoacetate

2-methylbutanol

(R)-4'-phosphopantothenate

5-hydroxyindole acetaldehyde

thiamine phosphate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

5-oxo-L-proline

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

thiamine diphosphate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

4-amino-4-deoxychorismate

(3S,5S)-3,5-diaminohexanoate

coproporphyrinogen III

3-sulfinopyruvate

propane-1,3-diamine

(2E,6E)-farnesyl diphosphate

2-methoxy-6-(all-trans-octaprenyl)phenol

glycolaldehyde

(Z)-3-hexanal

(2E,6E)-farnesal

fluoroacetaldehyde

aldehydo-D-mannose

β-D-mannopyranose

β-D-galactopyranose

α-D-galactopyranose

β-D-glucopyranose

α-D-glucopyranose

α-D-xylopyranose

D-glyceraldehyde

butan-1-al

1-octanal

acetaldehyde

formaldehyde

isobutanal

(E)-2-hexenal

methylglyoxal

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

2',4,4',6'-tetrahydroxychalcone

(S)-acetoin

(R)-acetoin

menadione

ubiquinone-8

diacetyl

an iron chelate

Hg⁰

oxygen

hydrogen sulfide

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

hypoglycin B

L-α-amino-ε-keto-pimelate

L-2-aminoadipate

L-tyrosine

L-phenylalanine

L-tryptophan

L-histidine

D-glutamate

D-alanine

L-arginine

L-lysine

L-ornithine

L-glutamine

L-proline

L-aspartate

L-cysteine

L-asparagine

L-methionine

L-selenocysteine

L-alanine

L-valine

L-cystathionine

L-glutamate

L-isoglutamine

L-threonine

L-2,4-diaminobutanoate

L,L-diaminopimelate

L-isoleucine

L-serine

L-leucine

L-aspartyl-4-phosphate

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-formimino-L-glutamate

N-acetyl-L-citrulline

N-acetyl-L-ornithine

L-citrulline

S-sulfo-L-cysteine

L-aspartate 4-semialdehyde

L-homoserine

O-phospho-L-homoserine

L-homocysteine

L-canaline

hypoglycin A

L-glutamate-5-semialdehyde

S-adenosyl-L-methionine

O-succinyl-L-homoserine

3-sulfino-L-alanine

S-adenosyl-L-homocysteine

meso-diaminopimelate

glycine

N-carbamoylsarcosine

(R)-β-lysine

β-alanine

L-2-amino-3-oxobutanoate

L-saccharopine

O-acetyl-L-homoserine

4-fluorothreonine

3-phospho-L-serine

N-acetyl-L-glutamate

N,N-dihydroxy-L-phenylalanine

N-hydroxy-L-phenylalanine

sarcosine

(3R)-3-hydroxy-L-aspartate

erythro-4-hydroxy-L-glutamate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

lotaustralin

preQ₀

linamarin

hydrogen cyanide

2-hydroxy-2-methylpropanenitrile

(2R)-2-hydroxy-2-methylbutanenitrile

chorismate

fumarate

succinate

(S)-malate

4-coumarate

4-aminobenzoate

pyruvate

2-oxoglutarate

2-oxobutanoate

4-(methylsulfanyl)-2-oxobutanoate

glyoxylate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

(R)-lactate

(S)-lactate

acetate

orotate

D-gluconate

fluoroacetate

(R)-pantoate

(S)-1-pyrroline-5-carboxylate

cis-aconitate

(1R,2S)-homoisocitrate

cis-homoaconitate

(2R)-homocitrate

D-threo-isocitrate

3-oxoadipate

leukotriene-D4

linoleate

(3E,5Z)-tetradecadienoate

oleate

palmitate

butanoate

apo-4'-lycopenoate

neurosporaxanthin

octanoate

(2E,6E)-farnesoate

formate

propanoate

5,10-methenyltetrahydrofolate mono-L-glutamate

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

torulene

all-trans phytofluene

15-cis-phytoene

all-trans-phytoene

all-trans-lycopene

all-trans-3,4-didehydrolycopene

all-trans-ζ-carotene

all-trans neurosporene

(3R)-linalool

(3S)-linalool

geranyl diphosphate

coumarin

(E)-phenylacetaldehyde oxime

(Z)-phenylacetaldehyde oxime

3-(all-trans-octaprenyl)benzene-1,2-diol

1-oleoyl-2-lyso-glycerone phosphate

superoxide

hydroxyl radical

coenzyme A

(R)-lipoate

molybdopterin

MoO₂-molybdopterin cofactor

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

7,8-dihydrofolate monoglutamate

chlorophyllide a

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

protochlorophyllide a

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

3,8-divinyl protochlorophyllide a

magnesium-protoporphyrin IX 13-monomethyl ester

hemin

Mg-protoporphyrin

protoheme

trimethyl sulfonium

sulfate

sulfite

thiosulfate

OH^-

hydrogensulfite

hydrogencarbonate

molybdate

fluoride

chloride

phosphate

diphosphate

triphosphate

Fe³⁺

Mg²⁺

Cu²⁺

Cd²⁺

Fe²⁺

Hg²⁺

Na⁺

ammonium

H⁺

ATP

GMP

ADP

dAMP

pppGpp

ppGpp

5'-chloro-5'-deoxyadenosine

2'-deoxyinosine

dGTP

GTP

adenylo-succinate

IMP

5-chloro-5-deoxyribose 1-phosphate

hypoxanthine

GDP

8-oxo-GTP

8-oxo-dGTP

isoguanine

2'-deoxyguanosine

AMP

dGDP

dATP

dADP

1-(5-phospho-β-D-ribosyl)-AMP

XMP

2'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-ATP

5'-deoxyadenosine

dGMP

adenine

guanine

uracil

cytosine

preQ₁

NAD⁺

NADP⁺

NADH

NADPH

GDP-4-dehydro-α-D-rhamnose

GDP-α-D-mannose

GDP-α-D-perosamine

2-thiouridine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

dTDP-α-D-glucose

ADP-α-D-glucose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

ADP-D-ribose

N^ω-(ADP-D-ribosyl)-L-arginine

UDP-N-acetyl-α-D-muramate

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-D-galactose

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-β-L-iduronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-galactofuranose

UDP-α-D-xylose

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

5'-deoxy-5'-fluoroadenosine

adenosine

xanthosine

guanosine

inosine

uridine

cytidine

2'-deoxycytidine

2'-deoxyuridine

thymidine

dTMP

dCMP

dUMP

CMP

UMP

UTP

CTP

CDP

UDP

dTTP

dUTP

dCTP

dTDP

dCDP

dUDP

β-nicotinamide D-ribonucleotide

2-hydroxy-dATP

5-hydroxy-CTP

urate

4-hydroxybenzoate

4-tyrosol

benzene

menadiol

demethylmenaquinol-8

3-demethylubiquinol-10

3-demethylubiquinol-7

3-demethylubiquinol-9

3-demethylubiquinol-8

ubiquinol-6

ubiquinol-10

ubiquinol-7

ubiquinol-9

ubiquinol-8

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

indole

(indol-3-yl)acetaldehyde

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

phenol

3-chlorocatechol

serotonin

2-phenylethylamine

tyramine

coumarinate

vanillyl mandelate

normetanephrine

metanephrine

3-methoxy-4-hydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

dopamine

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylacetate

3,4-dihydroxymandelate

catechol

(R)-noradrenaline

(R)-adrenaline

ethene

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

nicotinamide

2-chloroacetate

phenylacetate

sn-glycerol 3-phosphate

S-(hydroxymethyl)glutathione

3-dimethylsulfoniopropionaldehyde

3-(methylsulfanyl)propanal

methionol

dimethyl sulfide

glutathione

(R)-S-lactoylglutathione

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

L-cysteate

3-sulfopyruvate

(2R)-3-sulfolactate

(2R)-phospho-3-sulfolactate

thiocyanate

methanethiol

glycine betaine

betaine aldehyde

choline

betaine aldehyde hydrate

putrescine

spermine

spermidine

N-acetylputrescine

N¹-acetylspermine

N¹-acetylspermidine

2-iminopropanoate

4-[(Z)-2-aminoethenyl]phenol

4-[(E)-2-(methylamino)ethenyl]phenol

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

(indol-3-yl)acetate

FADH₂

FAD

riboflavin

FMN

(7,8-dihydropterin-6-yl)methyl diphosphate

cyclic pyranopterin phosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydromonapterin

molybdopterin adenine dinucleotide

7,8-dihydroneopterin 3'-phosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydroneopterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

6,7-dimethyl-8-(1-D-ribityl)lumazine

2-iminosuccinate

4-(2-iminoethyl)phenol

4-[(2Z)-2-(methylimino)ethyl]phenol

2-iminobutanoate

2-octaprenylphenol

3'-dephospho-CoA

(E)-2-methylcrotonoyl-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

linoleoyl-CoA

malonyl-CoA methyl ester

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

(+)-7-epi-jasmonoyl-CoA

(S)-3-aminobutanoyl-CoA

4-hydroxybenzoyl-CoA

glutaryl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

succinyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

phenylacetyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

methylacrylyl-CoA

malonyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(E)-glutaconyl-CoA

(2E,5Z)-tetradecenoyl-CoA

2-methylbutanoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

crotonyl-CoA

oleoyl-CoA

2-carboxy-cerotoyl-CoA

cerotoyl-CoA

3-oxoadipyl-CoA

acetoacetyl-CoA

palmitoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

octanoyl-CoA

butanoyl-CoA

propanoyl-CoA

(S)-malyl-CoA

(R)-methylmalonyl-CoA

(S)-methylmalonyl-CoA

D-glucono-1,5-lactone

trans-dienelactone

cis-dienelactone

(+)-5-chloromuconolactone

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

dioleoyl phosphatidate

1-oleoyl-sn-glycerol 3-phosphate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

trehalose-trans-methoxy-mono-mycolate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

α, α'-trehalose 6-α-mycolate

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

6-O-trans-keto-mycolyl-trehalose 6-phosphate

trehalose-cis-methoxy-mono-mycolate

6-O-α-mycolyl-trehalose 6-phosphate

trehalose-trans-keto-mono-mycolate

trehalose-cis-keto-mono-mycolate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-octaprenyl diphosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

3-octaprenyl-4-hydroxybenzoate

ethylphosphate

β-D-cellobiose

α,α-trehalose

maltotriose

maltoheptaose

maltohexaose

maltotetraose

cellotetraose

glycerol

galactitol

D-mannitol

D-xylulose

N-acetyl-β-D-glucosamine

N-acetyl-β-D-mannosamine

N-acetyl-α-D-glucosamine 1-phosphate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (E. faeciums)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (S. aureus)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

4-phospho-D-erythronate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

α-D-galactose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

β-D-glucopyranose 1-phosphate

D-tagatofuranose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

5-fluoro-5-deoxy-D-ribulose 1-phosphate

D-glyceraldehyde 3-phosphate

N,N'-diacetylchitobiose 6'-phosphate

α,α-trehalose 6-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

(3Z)-hex-3-en-1-ol

ethanol

butan-1-ol

myo-inositol

1D-myo-inositol 4-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 2-monophosphate

1D-myo-inositol 3-monophosphate

ethylene glycol

(R,R)-2,3-butanediol

(R,S)-2,3-butanediol

(S,S)-2,3-butanediol

nicotinate

thiamine

pyridoxal 5'-phosphate

pyridoxal

pyridoxamine 5'-phosphate

pyridoxamine

pyridoxine

pyridoxine 5'-phosphate

(S)-NADHX

(R)-NADHX

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrin IX

uroporphyrinogen-III

protoporphyrinogen IX

2-chloro-cis,cis-muconate