an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

3'-phosphoadenylyl-sulfate

6-aminohexanoate cyclic dimer

6-oxohexanoate

adipate

1-deoxy-L-glycero-tetrulose 4-phosphate

N⁵-carboxyaminoimidazole ribonucleotide

7-epicholate

dialurate

2-amino-3-carboxymuconate-6-semialdehyde

quinolinate

2-oxopent-4-enoate

N²-succinyl-L-ornithine

N²-succinyl-L-arginine

4-maleyl-acetoacetate

homogentisate

(R)-1-amino-2-propanol O-2-phosphate

L-xylo-hex-3-ulono-1,4-lactone

γ-butyrobetaine

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

3-hydroxypropanoate

autoinducer 2

ammonia

(2Z)-2-(acetamidomethylene)succinate

3-hydroxy-2-methylpyridine-5-carboxylate

3-hydroxy-2-methylpyridine-4,5-dicarboxylate

5-formyl-3-hydroxy-2-methylpyridine-4-carboxylate

4-pyridoxolactone

tartronate semialdehyde

5-(methylsulfanyl)-α-D-ribose

S-methyl-5'-thioadenosine

S-methyl-5-thio-α-D-ribose 1-phosphate

5-deoxy-α-ribose 1-phosphate

S-ribosyl-L-homocysteine

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

benzoylsuccinyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

7,8-diaminopelargonate

pimeloyl-CoA

8-amino-7-oxononanoate

dethiobiotin

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

6-amino-2-oxohexanoate

D-erythritol 4-phosphate

creatinine

N-succinyl-L,L-2,6-diaminopimelate

(R)-4'-phosphopantothenoyl-L-cysteine

L-gulono-1,4-lactone

(4S)-4-hydroxy-2-oxoheptanedioate

2-hydroxy-5-carboxymethylmuconate semialdehyde

5-carboxymethyl-2-hydroxymuconate

2-maleylacetate

2-iminoacetate

methylamine

(S)-mandelate

(R)-mandelate

4-fumaryl-acetoacetate

H₂

carboxynorspermidine

norspermidine

(S)-2-amino-6-oxohexanoate

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

(L-threonylcarbamoyl)adenylate

4-amino-4-deoxychorismate

(S)-ureidoglycolate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

prephytoene diphosphate

arsenite

ethanolamine

salicyl alcohol

methylsalicylate

hydrogenobyrinate

chloramphenicol

DNA without lesion

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

formamide

α-ribazole

(E)-2-benzylidenesuccinyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

(L-aspartyl)adenylate

(2,3-dihydroxybenzoyl)adenylate

isochorismate

sym-homospermidine

lipid IV_A

4-aminobutanoate

acetyl phosphate

(S)-4-amino-5-oxopentanoate

3-oxopropanoate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

α-D-glucosamine 1-phosphate

4-methyl-3-oxoadipate-enol-lactone

4-methyl-3-oxoadipate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

5-oxo-L-proline

N-methylhydantoin

6-phospho D-glucono-1,5-lactone

D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

4-imidazolone-5-propanoate

urocanate

2-dehydro-3-deoxy-D-galactonate

2-dehydro-3-deoxy-D-galactonate 6-phosphate

6-aminohexanoate linear dimer

6-aminohexanoate

dimethylsulfoniopropanoate

4-acetamidobutanal

4-acetamidobutanoate

D-glucurono-6,3-lactone

prop-2-ynal

propynoate

3,4-dihydroxyphenylacetaldehyde

5-hydroxyindole acetate

imidazole acetaldehyde

4-imidazoleacetate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

propionamide

(indol-3-yl)acetamide

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

(2E,4Z)-2-hydroxymuconate

(2Z,4E)-2-hydroxy-5-methyl-6-oxohexa-2,4-dienoate

2-hydroxy-6-oxohepta-2,4-dienoate

(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate

(2E,4Z)-2-hydroxy-6-oxohepta-2,4-dienoate

carbon monoxide

3-deoxy-α-D-manno-2-octulosonate

O-ureido-L-homoserine

(S)-3-methyl-2-oxopentanoate

S-formylglutathione

N-acetyl-D-muramate 6-phosphate

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

2-amino-2-deoxy-D-gluconate 6-phosphate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

2-phenylethanol

2-methylbutanol

2-methylbutanal

3-methylbutanol

3-methylbutanal

isobutanol

indole-3-glycol

indole-3-glycol aldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

4-amino-2-methyl-5-pyrimidinemethanol

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

histidinal

histidinol

3-ureidopropanoate

2-dehydropantoate

hydroxypyruvate

5-enolpyruvoyl-shikimate 3-phosphate

5-phospho-β-D-ribosylamine

hydrogen peroxide

adenosine 3',5'-bisphosphate

(S)-dihydroorotate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

N¹-(5-phospho-β-D-ribosyl)glycinamide

L-selenocystathionine

5-methylsalicylate

4-methylsalicylate

5-aminolevulinate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

5-amino-6-(D-ribitylamino)uracil

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

2-phosphoglycolate

glycolate

glutathione disulfide

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

4-methylmuconolactone

xanthine

hydrogen selenide

4'-phosphopantetheine

2-C-methyl-D-erythritol 4-phosphate

dihydrolipoamide

S-acetyldihydrolipoamide

2-(α-hydroxyethyl)thiamine diphosphate

3-deoxy-D-manno-octulosonate 8-phosphate

citrate

lipid X

lipid A disaccharide (E. coli)

oxalosuccinate

O-acetyl-L-serine

hydrogenobyrinate a,c-diamide

urea

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

prenyl diphosphate

(E)-3-(methoxycarbonyl)pent-2-enedioate

carbamoyl phosphate

4-hydroxy-2-nonenal

3-methyl-2-oxobutanoate

anthranilate

dihydroxyacetone

glycerone phosphate

succinate semialdehyde

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

4-phosphooxy-L-threonine

3-phosphooxypyruvate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

thiamine diphosphate

isopentenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

acetoacetate

carbonic acid

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

γ-L-glutamyl 5-phosphate

3-demethylubiquinol-6

porphobilinogen

preuroporphyrinogen

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

canavaninosuccinate

L-canavanine

L-arginino-succinate

L-histidinol phosphate

prephenate

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

shikimate 3-phosphate

coproporphyrinogen III

shikimate

3-dehydroshikimate

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

(R)-pantothenate

(R)-4'-phosphopantothenate

oxaloacetate

phosphoenolpyruvate

N-(5-phosphoribosyl)-anthranilate

orotidine 5'-phosphate

pseudouridine 5'-phosphate

CO₂

2,3-didehydroadipyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

H₂O

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

enol-phenylpyruvate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-hydroxyindole thiazolidine carboxylate

bisorganyltrisulfane

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

(3E)-2-oxopent-3-enoate

(2E)-2-hydroxypenta-2,4-dienoate

4-oxoglutaramate

1-piperideine-2-carboxylate

1-piperideine 6-carboxylate

5-aminopentanoate

L-dehydro-ascorbate

α-D-galacturonate 1-phosphate

pseudouridine

protoanemonin

selenodiglutathione

glutathioselenol

3'-ketosucrose

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

phenylacetate

ethylphosphate

cobalt-factor III

cobalt-precorrin-3

cobalt-sirohydrochlorin

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-4

cobalt-precorrin-5A

cob(II)yrinate c-monoamide

cobyrinate

cobalt-precorrin-5B

cobalt-precorrin-6A

adenosyl-cobinamide phosphate

adenosylcobyrate

adenosylcobalamin 5'-phosphate

adenosylcobinamide-GDP

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)alamin

adenosylcobalamin

cob(I)inamide

adenosylcobinamide

cob(II)yrinate a,c-diamide

protoheme

N₂

nitrous oxide

hydrogen cyanide

protoporphyrin IX

protoporphyrinogen IX

uroporphyrinogen-III

uroporphyrinogen-I

coproporphyrinogen I

siroheme

hydrogen sulfide

oxygen

S⁰

sn-glycerol 3-phosphate

2,3-diphospho-D-glycerate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

1-oleoyl-2-lyso-glycerone phosphate

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

5,10-methenyltetrahydrofolate mono-L-glutamate

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

(S)-2-hydroxyglutarate

nitric oxide

superoxide

monodehydroascorbate radical

hydroxyl radical

chloramphenicol 3-acetate

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

2-iminosuccinate

2-iminopropanoate

2-iminobutanoate

dimethyl sulfide

3-dimethylsulfoniopropionaldehyde

methionol

3-(methylsulfanyl)propanal

S-(hydroxymethyl)glutathione

thiocyanate

methanethiol

glutathione

S-sulfanylglutathione

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

L-cysteate

3-sulfopyruvate

taurine

3-sulfocatechol

(R)-S-lactoylglutathione

Fe³⁺

ammonium

H⁺

Mg²⁺

Cd²⁺

Fe²⁺

Cu²⁺

Co²⁺

Ni²⁺

Zn²⁺

Mo²⁺

trimethyl sulfonium

nitrate

nitrite

hydrogensulfite

sulfite

selenate

thiosulfate

sulfate

hydrogencarbonate

molybdate

OH^-

selenite

phosphate

triphosphate

diphosphate

chloride

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

agmatine

cadaverine

spermidine

putrescine

glycine betaine

choline

betaine aldehyde

betaine aldehyde hydrate

sn-glycero-3-phosphocholine

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

(S)-2-chloropropanoate

3-chloro-cis,cis-muconate

2-chloro-5-methyl-dienelactone

3,5-dichloro-2-methyl-muconate

3,5-dichloro-2-methyl-muconolactone

2-chloro-5-methyl-maleylacetate

3-chloro-2-methyl-dienelactone

3-chloro-2-methyl-maleylacetate

5-chlorosalicylate

4-chlorosalicylate

4-chlorocatechol

2,4-dichlorotoluene

(1R,2S)-4,6-dichloro-3-methylcyclohexa-3,5-diene-1,2-diol

4,6-dichloro-3-methylcatechol

acetamide

6-caprolactam

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

nicotinamide

3α,7α,12β-trihydroxy-5β-cholan-24-oate

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

3-dehydrocholate

isocholate

glycocholate

cholate

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

γ-butyrobetainyl-CoA

phenylacetyl-CoA

3-hydroxypropanoyl-CoA

acryloyl-CoA

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

(3R)-hydroxy-5-trans-dodecenoyl-CoA

L-carnitinyl-CoA

crotonobetainyl-CoA

isobutanoyl-CoA

isovaleryl-CoA

3-methylcrotonyl-CoA

(E)-glutaconyl-CoA

(2E,5Z)-tetradecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

4-hydroxybenzoyl-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

2-methylacetoacetyl-CoA

dihomo γ-linolenoyl-CoA

succinyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

3'-dephospho-CoA

acetyl-CoA

malonyl-CoA

3-hydroxyisovaleryl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

methylacrylyl-CoA

2-methylbutanoyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

(2E)-octadec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(S)-malyl-CoA

(3Z)-dodec-3-enoyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

cerotoyl-CoA

2-carboxy-cerotoyl-CoA

butanoyl-CoA

propanoyl-CoA

hexanoyl-CoA

octanoyl-CoA

decanoyl-CoA

lauroyl-CoA

myristoyl-CoA

stearoyl-CoA

palmitoyl-CoA

icosanoyl-CoA

hexadecanedioyl-CoA

3-oxoadipyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

3-oxooctanoyl-CoA

3-oxododecanoyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

3-oxo-palmitoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

all-trans-retinyl palmitate

L-galactono-1,4-lactone

trans-dienelactone

cis-dienelactone

L-glucono-1,5-lactone

D-glucono-1,5-lactone

FADH₂

FMNH₂

FAD

FMN

(S)-NADHX

(R)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

caldariellaquinol

ubiquinol-10

ubiquinol-7

ubiquinol-6

ubiquinol-8

ubiquinol-9

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-10

3-demethylubiquinol-7

3-demethylubiquinol-8

3-demethylubiquinol-9

caldariellaquinone

coenzyme A

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

L-ascorbate

riboflavin

nicotinate

thiamine

4-pyridoxate

pyridoxal

pyridoxal 5'-phosphate

pyridoxamine

pyridoxamine 5'-phosphate

pyridoxine

pyridoxine 5'-phosphate

L-carnitine

all-trans-retinol

(S)-1-pyrroline-5-carboxylate

precorrin-7

precorrin-8x

precorrin-3A

precorrin-3B

precorrin-1

precorrin-2

precorrin-6B

precorrin-6A

precorrin-4

precorrin-5

sirohydrochlorin

hydantoin

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

7,8-dihydropterin

7,8-dihydromonapterin

7,8-dihydroneopterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydropteroate

adenine

guanine

2'-deoxyguanosine

2'-deoxyadenosine

adenosine

guanosine

xanthosine

hypoxanthine

dGMP

dAMP

dITP

dGTP

dATP

dIDP

dGDP

dADP

IDP

GDP

ADP

XMP

IMP

GMP

AMP

ITP

GTP

ATP

cytosine

5,6-dihydrothymine

5,6-dihydrouracil

orotate

dTDP

dUDP

dCDP

CDP

dTTP

dCTP

dCMP

UTP

CTP

dTMP

UDP

dUTP

dUMP

uracil

UDP-α-D-glucuronate

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-α-D-glucose

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-galacturonate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-4-dehydro-β-L-rhamnose

CDP-α-D-glucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

cytidine

uridine

thymidine

2'-deoxycytidine

2'-deoxyuridine

thymine

CMP

UMP

isoguanine

N¹-methyladenine

N3-methylcytosine

N¹-ethyladenine

preQ₁

acrylonitrile

(indole-3-yl)acetonitrile

preQ₀

3-hexaprenyl-4-hydroxybenzoate

4-hydroxybenzoate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

2-[(1R,6S)-1,6-dihydroxycyclohexa-2,4-dien-1-yl]acetyl-coA

4-tyrosol

urate

toluene

salicylaldehyde

vanillyl mandelate

3-methoxy-4-hydroxyphenylglycol

benzaldehyde

phenylacetaldehyde

(4-hydroxyphenyl)acetaldehyde

(indol-3-yl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

4-methylphenol

protocatechuate

2,3-dihydroxybenzoate

3,4-dihydroxyphenylacetate

3,4-dihydroxymandelate

3-methylcatechol

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

catechol

4-methylcatechol

enterobactin

salicylate

4-aminobenzoate

benzoate

3-methyl-cis,cis-muconate

chorismate

(4S)-4-hydroxy-2-oxoglutarate

succinate

L-aspartate

fumarate

(S)-malate

D-glucarate

3-(carbamoylamino)-2-methylpropanoate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

3-carboxy-cis,cis-muconate

cis-aconitate

trans-aconitate

D-threo-isocitrate

(R)-3-hydroxybutanoate

(S)-lactate

(R)-lactate

formate

propanoate

acetate

pyruvate

butanoate

octanoate

decanoate

laurate

(2E,6E)-farnesoate

3-oxoadipate

oleate

(3E,5Z)-tetradecadienoate

apo-4'-lycopenoate

di-homo-γ-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

phytenate

arachidate

myristate

stearate

palmitate

D-idonate

L-gluconate

5-dehydro-L-gluconate

D-gluconate

D-mannonate

(R)-pantoate

D-tagaturonate

aldehydo-D-galacturonate

aldehydo-D-glucuronate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

glyoxylate

2-oxobutanoate

2-oxoglutarate

L-α-amino-ε-keto-pimelate

L-serine

creatine

N-carbamoylsarcosine

β-alanine

(S)-3-amino-2-methylpropanoate

(R)-3-amino-2-methylpropanoate

L-proline

L-alanine

L-glutamine

L-leucine

glycine

D-glutamate

L-glutamate

L-histidine

L-arginine

L-lysine

L-tyrosine

L-threonine

L-asparagine

L-cysteine

L-tryptophan

L-phenylalanine

D-lysine

D-proline

cis-4-hydroxy-D-proline

D-aspartate

D-alanine

L-saccharopine

seleno-L-homocysteine

L-aspartyl-4-phosphate

sarcosine

N-carbamoylglycine

N-formyl-L-glutamate

formyl-L-isoglutamine

N-formimino-L-glutamate

N-acetyl-L-aspartate

N-acetyl-L-ornithine

N-acetyl-L-methionine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

3-phospho-L-serine

L-citrulline

L-isoleucine

L-valine

L-canaline

O-succinyl-L-homoserine

O-phospho-L-homoserine

S-sulfo-L-cysteine

L-homoserine

L-aspartate 4-semialdehyde

L-glutamate-5-semialdehyde

L-ornithine

L-homocysteine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-4-hydroxyglutamate semialdehyde

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-selenocysteine

L-methionine

L-cystathionine

L,L-diaminopimelate

L-isoglutamine

a coenzyme-A group

methylglyoxal

diacetyl

(2E,6E)-farnesal

glycolaldehyde

butan-1-al

1-octanal

isobutanal

1-propanal

acetaldehyde

formaldehyde

(S)-lactaldehyde

phytenal

D-glyceraldehyde

L-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

α-D-galactopyranose

β-D-galactopyranose

L-sorbosone

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

butan-1-ol

methanol

propan-1-ol

ethanol

phytol

glycerol

erythritol

D-ribitol

galactitol

(2E,6E)-farnesol

myo-inositol

scyllo-inosose

1D-myo-inositol 2-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 4-monophosphate

1D-myo-inositol 3-monophosphate

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-oleoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

apo-4'-lycopenal

15-cis-phytoene

all-trans-phytoene

geranyl diphosphate

trans,octacis-decaprenyl phosphate

(2E,6E)-farnesyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

3-nonaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-nonaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-decaprenyl diphosphate

geranylgeranyl diphosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

α-Kdo-(2→6)-lipid IV_A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

sucrose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

L-sorbosone 2,6-lactone

L-sorbosone 1,4-lactone

keto-L-sorbose

L-glucose

keto-D-fructose

β-D-fructofuranose

D-xylulose

D-ribulose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

3-dehydro-D-glucopyranose

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (mycobacteria)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

GDP-α-D-glucose

GDP-α-D-perosamine

GDP-4-dehydro-α-D-rhamnose

GDP-α-D-mannose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

4-phospho-D-erythronate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

β-D-fructose 1,6-bisphosphate

6-deoxy-5-ketofructose 1-phosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

β-D-galactose 6-phosphate

α-D-galactose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

aldehydo-D-arabinose 5-phosphate

α-D-ribose-1-phosphate

L-fuculose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

D-galactonate

D-altronate

L-gulonate

aldehydo-L-galactonate

5'-deoxyadenosine

adenylo-succinate

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

8-oxo-GTP

8-oxo-dGTP

2-hydroxy-dATP

5-hydroxy-CTP

5-hydroxy-CMP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cyclic di-3',5'-guanylate

hippurate