an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

thiamine phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

arsenite

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

homogentisate

(2-hydroxyphenyl)acetate

hydrogenobyrinate a,c-diamide

hydrogenobyrinate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

S-methyl-5'-thioadenosine

S-adenosyl 3-(methylsulfanyl)propylamine

urea

(L-threonylcarbamoyl)adenylate

DNA without lesion

methylsalicylate

carbonic acid

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

benzoylsuccinyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

β-D-ribosylnicotinate

1,4-dihydroxy-2-naphthoate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

1,4-dihydroxy-2-naphthoyl-CoA

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

2-succinylbenzoate

2-oleoylglycerol

carbon monoxide

oxalosuccinate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

2,3-didehydroadipyl-CoA

(E)-4-coumaroyl-CoA

(E)-2-benzylidenesuccinyl-CoA

4-amino-4-deoxychorismate

2-phenylethanol

2-methylbutanal

2-methylbutanol

3-methylbutanal

3-methylbutanol

isobutanol

indole-3-glycol aldehyde

indole-3-glycol

5-hydroxytryptophol

(S)-2-amino-6-oxohexanoate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

xanthine

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

(indol-3-yl)pyruvate

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

itaconate

(S)-2,3-dihydrodipicolinate

nigerose

formamide

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

N²-succinylglutamate

N²-succinyl-L-glutamate 5-semialdehyde

3-oxopropanoate

hydroxylamine

3-deoxy-D-arabino-heptulosonate 7-phosphate

L-histidinol phosphate

methylamine

3-hydroxyanthranilate

N-Formyl-L-kynurenine

1,6-anhydro-N-acetyl-β-muramate

succinate semialdehyde

4-aminobutanoate

(L-aspartyl)adenylate

(2,3-dihydroxybenzoyl)adenylate

3-hydroxypropanoate

propionamide

(indol-3-yl)acetamide

4-guanidinobutanoate

4-guanidinobutyramide

acrylate

acrylamide

glutathionylspermidine

(2R,3S)-3-methylmalate

citraconate

O-D-alanyl-poly(ribitol phosphate)

poly(ribitol phosphate)

1-pyrroline

glycolate

macrocin

(lipoyl)adenylate

2-maleylacetate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

2-iminoacetate

ethylamine

N-ethylglycine

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

4-maleyl-acetoacetate

4-fumaryl-acetoacetate

α-D-glucosamine 1-phosphate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

N⁵-carboxyaminoimidazole ribonucleotide

(2R)-2-amino-4-oxopentanoate

(2R,4S)-2, 4-diaminopentanoate

5-aminopentanoate

5-ureidoimidazole-4-carboxylate

5-aminoimidazole-4-carboxylate

4-aminoimidazole

3,5-dihydro-4H-imidazol-4-one

H₂

N-succinyl-L,L-2,6-diaminopimelate

2-amino-3-carboxymuconate-6-semialdehyde

ammonia

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

(S)-4-hydroxy-2-oxohexanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

1-deoxy-L-glycero-tetrulose 4-phosphate

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

gallate

1,2,3,5-tetrahydroxybenzene

pyrogallol

phloroglucinol

dihydrophloroglucinol

3-hydroxy-5-oxohexanoate

3-hydroxy-5- oxohexanoyl-CoA

crotonate

cyclohex-1,5-diene-1-carbonyl-CoA

6-hydroxycyclohex-1-ene-1-carbonyl-CoA

6-oxocyclohex-1-ene-1-carbonyl-CoA

3-hydroxypimeloyl-CoA

3-oxopimeloyl-CoA

cyclohexane-1-carboxylate

cyclohexane-1-carbonyl-CoA

2-hydroxy-6-oxocyclohexane-1-carbonyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

(3S,5S)-3,5-diaminohexanoate

(S)-5-amino-3-oxohexanoate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

glutathioselenol

selenodiglutathione

adipate

6-oxohexanoate

6-aminohexanoate cyclic dimer

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

7-epicholate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

CDP-glycerol

L-gulono-1,4-lactone

L-xylo-hex-3-ulono-1,4-lactone

α-D-galacturonate 1-phosphate

1-piperideine 6-carboxylate

4-oxoglutaramate

pyruvic oxime

aminoacetone

5-hydroxyindole thiazolidine carboxylate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

L-dehydro-ascorbate

cyclic-2,3-O-oxalyl-L-threonate

dehydroascorbate (bicyclic form)

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

cyclic- 3,4-O-oxalyl-L-threonate

2,3-dioxo-L-gulonate

2-carboxy-L-xylonolactone

2-carboxy-L-threo-pentonate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

H₂O

hydrogen peroxide

ManNAc-GlcNAc-PP-undecaprenol

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

O-acetyl-L-serine

hydrogen selenide

acetyl phosphate

ethanolamine

glycerone phosphate

2-amino-2-deoxy-D-gluconate 6-phosphate

dihydroxyacetone

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

N-acetyl-D-muramate 6-phosphate

salicyl alcohol

phosphoenolpyruvate

CO₂

cyanate

2,5-didehydro-D-gluconate

2-keto-D-gluconate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

autoinducer 2

S-ribosyl-L-homocysteine

oxaloacetate

L-arginino-succinate

canavaninosuccinate

O-ureido-L-homoserine

citrate

isopropylamine

N-isopropylammelide

(S)-4-amino-5-oxopentanoate

preuroporphyrinogen

porphobilinogen

5-aminolevulinate

enol-phenylpyruvate

prephenate

quinolinate

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

coproporphyrinogen III

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

isopentenyl diphosphate

prenyl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

shikimate 3-phosphate

shikimate

3-dehydroshikimate

3-dehydroquinate

butanoyl phosphate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

4-methyl-2-oxopentanoate

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

dethiobiotin

7,8-diaminopelargonate

8-amino-7-oxononanoate

pimeloyl-CoA

5-amino-6-(D-ribitylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribosylamino)uracil

5-amino-6-(5-phospho-D-ribitylamino)uracil

S-methyl-5-thio-α-D-ribose 1-phosphate

5-(methylsulfanyl)-α-D-ribose

5-(methylsulfanyl)-ribulose 1-phosphate

thiamine diphosphate

2-(α-hydroxyethyl)thiamine diphosphate

4'-phosphopantetheine

2-dehydropantoate

(S)-dihydroorotate

orotidine 5'-phosphate

(R)-4'-phosphopantothenoyl-L-cysteine

(R)-4'-phosphopantothenate

2-C-methyl-D-erythritol 4-phosphate

4-methylumbelliferyl glucoside

4-hydroxybenzaldehyde

scopolin

cis-coumarinic acid-β-D-glucoside

D-gluconate 6-phosphate

6-phospho D-glucono-1,5-lactone

urocanate

4-imidazolone-5-propanoate

4-imidazoleacetate

imidazole acetaldehyde

5-hydroxyindole acetate

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

3,4-dihydroxyphenylacetaldehyde

propynoate

prop-2-ynal

D-glucurono-6,3-lactone

4-acetamidobutanoate

4-acetamidobutanal

dimethylsulfoniopropanoate

L-canavanine

N-carbamoylputrescine

6-aminohexanoate

6-aminohexanoate linear dimer

3-phosphooxypyruvate

4-phosphooxy-L-threonine

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

urea-1-carboxylate

γ-L-glutamyl 5-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

4-amino-2-methyl-5-pyrimidinemethanol

chloramphenicol

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

L-β-lysine

acetoacetate

N,N-dimethyl-1,4-phenylenediamine

glutathione disulfide

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

(R)-pantothenate

3'-phosphoadenylyl-sulfate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

histidinol

histidinal

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(2S)-2-isopropylmalate

2-oxovalerate

3-ethylmalate

(2S)-2-isopropyl-3-oxosuccinate

carbamoyl phosphate

N-(5-phosphoribosyl)-anthranilate

anthranilate

5-carboxymethyl-2-hydroxymuconate

L-kynurenine

L-α-amino-ε-keto-pimelate

carbamate

L-methionine

L-cysteine

L-alanine

L-selenocysteine

glycine

L-phenylalanine

L-proline

L-tryptophan

L-isoleucine

L-leucine

L-valine

L-threonine

L-isoglutamine

L-glutamate

L-glutamine

L-asparagine

L-aspartate

L-serine

L-arginine

N^ω-hydroxy-L-arginine

L-tyrosine

L,L-diaminopimelate

L-cystathionine

L-histidine

L-aspartyl-4-phosphate

L-lysine

L-ornithine

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-acetyl-L-ornithine

N-acetyl-L-citrulline

N-formimino-L-glutamate

L-citrulline

L-canaline

3-sulfino-L-alanine

L-4-hydroxyglutamate semialdehyde

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

S-sulfo-L-cysteine

O-succinyl-L-homoserine

L-homoserine

L-aspartate 4-semialdehyde

L-homocysteine

L-cystine

1-aminocyclopropane-1-carboxylate

L-glutamate-5-semialdehyde

O-phospho-L-homoserine

D-ornithine

meso-diaminopimelate

L-2-amino-3-oxobutanoate

L-saccharopine

S-sulfanyl-L-cysteine

L-selenomethionine

seleno-L-homocysteine

3-phospho-L-serine

O-acetyl-L-homoserine

3-hydroxy-L-kynurenine

N-formimino-glycine

N-acetyl-L-glutamate

N-acetyl-L-methionine

sarcosine

S-methyl-L-methionine

D-aspartate

D-proline

D-serine

D-alanine

D-glutamate

β-alanine

(S)-3-amino-2-methylpropanoate

XMP

adenosine 3'-monophosphate

guanosine 3'-monophosphate

adenosine 2',3'-cyclic monophosphate

guanosine 2',3'-cyclic monophosphate

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

2'-deoxyinosine

2'-deoxyguanosine

2'-deoxyadenosine

cyclic-AMP

dGMP

dAMP

AMP

ATP

ADP

GDP

adenylo-succinate

IMP

GTP

ppGpp

pppGpp

5'-deoxyadenosine

GMP

dATP

dGTP

dADP

dGDP

hypoxanthine

ITP

IDP

dITP

dIDP

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

ADP-α-D-glucose

GDP-α-D-mannuronate

GDP-α-D-mannose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-α-D-glucose

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-galacturonate

UDP-α-D-glucuronate

UDP-α-D-glucose

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-galactofuranose

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

purine

guanine

adenine

uracil

thymine

preQ₁

uridine 3'-monophosphate

cytidine-3'-monophosphate

NAD⁺

NADP⁺

NADH

NADPH

cyclic di-3',5'-guanylate

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

dUMP

dTMP

dCMP

dCDP

dTDP

dUDP

dCTP

dUTP

dTTP

UDP

CDP

β-nicotinamide D-ribonucleotide

reduced β-nicotinamide D-ribonucleotide

CTP

UTP

UMP

CMP

two adjacent thymidines in DNA

(5R)-5,6-dihydro-5-(thymidin-7-yl)thymidine (in DNA)

2'-deoxycytidine

2'-deoxyuridine

thymidine

guanosine

inosine

xanthosine

adenosine

cytidine

uridine

5'-deoxy-5'-fluoroadenosine

D-gluconate

L-gulonate

aldehydo-L-galactonate

1-(β-D ribofuranosyl)nicotinamide

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

lotaustralin

arbutin-6-phosphate

salicin 6-phosphate

methyl β-D-glucoside 6-phosphate

taxiphyllin

linamarin

linustatin

neolinustatin

D-sedoheptulose 1,7-bisphosphate

4-phospho-D-erythronate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

L-fuculose 1-phosphate

α-D-glucopyranose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-galactose 6-phosphate

β-D-galactose 6-phosphate

D-fructose 6-phosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

sucrose 6^F-phosphate

N,N'-diacetylchitobiose 6'-phosphate

N-monoacetylchitobiose 6'-phosphate

β-D-cellobiose 6'-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

D-ribulose-1,5-bisphosphate

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faecium, tetrapeptide)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

β-D-fructofuranose

glycolaldehyde

aldehydo-D-ribose

β-D-ribopyranose

β-D-ribofuranose

α-D-ribofuranose

β-D-galactopyranose

α-D-galactopyranose

β-D-glucopyranose

α-D-glucopyranose

D-glyceraldehyde

D-xylulose

keto-D-fructose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-glucosamine

glycerol

β-D-cellobiose

maltotriose

sucrose

maltotetraose

maltopentaose

maltohexaose

maltoheptaose

aldehydo-D-galacturonate

salicylaldehyde

4-methylumbelliferone

coumarin

scopoletin

all-trans-retinol

all-trans-retinyl palmitate

(3S)-2,3-epoxy-2,3-dihydrosqualene

dammarenediol II

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

(2E,6E)-farnesyl diphosphate

(2E,6E)-farnesol

apo-4'-lycopenal

apo-4'-lycopenoate

tylosin

betanidin quinone

betanidin

(3R)-hydroxy-5-trans-dodecenoyl-CoA

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

(3E)-undec-2-enoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(2E,5E)-dodeca-2,5-dienoyl-CoA

2-trans, 5-cis, 7-trans-tetradecatrienoyl-CoA

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

4-cis-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

2-trans-nonenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3E)-dec-3-enoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

1,2-dibutyrin

tributyrin

3-octaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-heptaprenyl diphosphate

geranylgeranyl diphosphate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

dioleoyl phosphatidate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-oleoyl-2-lyso-glycerone phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-oleoyl-sn-glycerol 3-phosphate

myo-inositol

1D-myo-inositol 3-monophosphate

1D-myo-inositol 4-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 2-monophosphate

phytate

D-myo-inositol (1,2,3,5,6) pentakisphosphate

hydroquinone

3,4-dihydroxyphenylglycol

2,3-dihydroxybenzoate

protocatechuate

3,4-dihydroxymandelate

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxyphenylacetate

phytol

propan-1-ol

butan-1-ol

ethanol

methanol

fluoroacetaldehyde

(2E,6E)-farnesal

methylglyoxal

phenylacetaldehyde

(4-hydroxyphenyl)acetaldehyde

benzaldehyde

phytenal

(S)-lactaldehyde

isobutanal

1-propanal

butan-1-al

acetaldehyde

formaldehyde

1-octanal

(R)-acetoin

menadione

diacetyl

4-methylphenol

hippurate

a coenzyme-A group

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

4-(methylsulfanyl)-2-oxobutanoate

pyruvate

2-oxobutanoate

2-oxoglutarate

glyoxylate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

salicylate

4-aminobenzoate

benzoate

orotate

fluoroacetate

acetate

(R)-pantoate

(S)-1-pyrroline-5-carboxylate

aldehydo-D-glucuronate

leukotriene-E4

leukotriene-D4

pristanate

decanoate

palmitate

octanoate

butanoate

linoleate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

α-linolenate

γ-linolenate

(3E,5Z)-tetradecadienoate

oleate

(15Z)-tetracosenoate

phytenate

(2E,6E)-farnesoate

3-oxoadipate

propanoate

formate

(R)-lactate

(S)-lactate

(2R,3S)-2-methylisocitrate

(R)-glycerate

(S)-2-hydroxyglutarate

(R)-3-hydroxybutanoate

cis-aconitate

3-carboxy-cis,cis-muconate

cis-2-methylaconitate

(2S,3S)-2-methylcitrate

D-threo-isocitrate

(3E)-2-oxohex-3-enedioate

chorismate

D-glucarate

succinate

fumarate

(S)-malate

Gro-P-ManNAc-GlcNAc-PP-undecaprenol

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

4-tyrosol

urate

6,8-dihydroxypurine

8-hydroxypurine

4-hydroxybenzoate

cyanuric acid

coumarinate

6,7-dehydrobaicalein

baicalein

aniline

menadiol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

3-demethylubiquinol-8

demethylmenaquinol-8

demethylmenaquinol-7

menaquinol-8

menaquinol-7

ubiquinol-8

(indol-3-yl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

3-methoxy-4-hydroxyphenylglycol

vanillyl mandelate

(indole-3-yl)acetonitrile

preQ₀

hydrogen cyanide

(2R)-2-hydroxy-2-methylbutanenitrile

2-hydroxy-2-methylpropanenitrile

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

molybdopterin

cyclic pyranopterin phosphate

7,8-dihydromonapterin

7,8-dihydroneopterin

7,8-dihydroneopterin 3'-phosphate

molybdopterin adenine dinucleotide

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

FMN

FAD

riboflavin

FMNH₂

reduced riboflavin

FADH₂

6,7-dimethyl-8-(1-D-ribityl)lumazine

dipicolinate

formylaminopyrimidine

aminomethylpyrimidine

cobyrinate

sirohydrochlorin

precorrin-2

precorrin-1

cobalt-precorrin-5A

cobalt-precorrin-4

cobalt-precorrin-6A

cobalt-precorrin-5B

cobalt-precorrin-6B

cobalt-precorrin-8

cobalt-precorrin-7

cobalt-precorrin-3

adenosylcobalamin

cob(I)alamin

nicotinate

nicotinamide

L-ascorbate

thiamine

pyridoxal 5'-phosphate

pyridoxal

pyridoxamine 5'-phosphate

pyridoxamine

pyridoxine 5'-phosphate

pyridoxine

(R)-lipoate

coenzyme A

(R)-NADHX

(S)-NADHX

D-glucono-1,5-lactone

trans-dienelactone

cis-dienelactone

L-galactono-1,4-lactone

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

linoleoyl-CoA

α-linolenoyl-CoA

(E)-2-methylcrotonoyl-CoA

3-hydroxyisovaleryl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

(2E,5Z)-tetradecenoyl-CoA

methylacrylyl-CoA

itaconyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3-hydroxypropanoyl-CoA

glutaryl-CoA

phenylacetyl-CoA

(E)-glutaconyl-CoA

(S)-3-aminobutanoyl-CoA

succinyl-CoA

acetyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

(+)-7-epi-jasmonoyl-CoA

4-hydroxybenzoyl-CoA

3'-dephospho-CoA

2-methylacetoacetyl-CoA

2-methylbutanoyl-CoA

isobutanoyl-CoA

malonyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

oleoyl-CoA

3-oxoadipyl-CoA

3-oxo-palmitoyl-CoA

3-oxooctadecanoyl-CoA

3-oxo-myristoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxohexanoyl-CoA

3-oxodecanoyl-CoA

3-oxododecanoyl-CoA

3-oxooctanoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

hexadecanedioyl-CoA

palmitoyl-CoA

pristanoyl-CoA

octanoyl-CoA

lauroyl-CoA

decanoyl-CoA

hexanoyl-CoA

butanoyl-CoA

propanoyl-CoA

cerotoyl-CoA

(Z)-15-tetracosenoyl-CoA

2-carboxy-cerotoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(3R)-3-hydroxypentanoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(3Z)-dodec-3-enoyl-CoA

phytenoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-octadec-2-enoyl-CoA

crotonyl-CoA

(S)-methylmalonyl-CoA

methyl (indol-3-yl)acetate

phenylacetate

(indol-3-yl)acetate

3,24-dioxocholest-4-en-26-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oate

cycloartenol

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

3α,7α,12β-trihydroxy-5β-cholan-24-oate

3,22-dioxochol-4-en-24-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

lanosterol

isocholate

3-dehydrocholate

cholate

glycocholate

androst-4-ene-3,17-dione

androsta-1,4-diene-3,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

6-caprolactam

acetamide

sn-glycero-3-phosphocholine

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

choline

agmatine

spermidine

putrescine

4-aminobutanal

2-aminoprop-2-enoate

2-iminopropanoate

(2Z)-2-aminobut-2-enoate

selenide

sulfite

molybdate

selenite

hydrogensulfite

sulfate

superoxide

thiosulfate

hydrogencarbonate

nitrate

nitrite

selenate

phosphate

triphosphate

diphosphate

Mg²⁺

Cd²⁺

Co²⁺

Ca²⁺

Fe²⁺

K⁺

ammonium

H⁺

trimethyl sulfonium

3-(methylsulfanyl)propanal

methionol

dimethyl sulfide

S-(hydroxymethyl)glutathione

3-dimethylsulfoniopropionaldehyde

glutathione

(R)-S-lactoylglutathione

3-sulfopyruvate

L-cysteate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

5-(2-hydroxyethyl)-4-methylthiazole

thiocyanate

S-sulfanylglutathione

chloramphenicol 3-acetate

monodehydroascorbate radical

nitric oxide

2-methoxy-6-(all-trans-octaprenyl)phenol

2-octaprenylphenol

(S)-3-hydroxy-isobutanoate

3-(all-trans-octaprenyl)benzene-1,2-diol

5,10-methenyltetrahydrofolate mono-L-glutamate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

(R)-citramalate

α-D-glucosamine 6-phosphate

(2R)-2,3-dihydroxy-3-methylbutanoate

4-dimethylaminophenylazobenzene

2,3-diphospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

oxygen

hydrogen sulfide

protoporphyrinogen IX

protoporphyrin IX

coproporphyrinogen I

uroporphyrinogen-I

uroporphyrinogen-III

siroheme

protoheme

cob(II)yrinate a,c-diamide

cob(II)yrinate c-monoamide

adenosylcobinamide

cob(I)inamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

cobalt-sirohydrochlorin

cobalt-factor III

phosphonoacetaldehyde

(2-aminoethyl)phosphonate

ethylphosphate

DNA with lesion

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

N-acetyl-L-glutaminyl-L-glutamine amide

N-acetyl-L-glutaminyl-L-glutamine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

2-iminobutanoate

2-iminosuccinate