an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

oxalosuccinate

citrate

acetoacetate

prephenate

N-(5-phosphoribosyl)-anthranilate

anthranilate

4-amino-4-deoxychorismate

6-aminohexanoate linear dimer

6-aminohexanoate

methylsalicylate

carbon monoxide

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

N⁴-(β-N-acetyl-D-glucosaminyl)-L-asparagine

N-acetyl-β-glucosaminylamine

(L-threonylcarbamoyl)adenylate

4-pyridoxolactone

ethanolamine

H₂O

H₂

2,6-dioxo-6-phenylhexa-3-enoate

phosphoenolpyruvate

2-oxopent-4-enoate

lipid IV_A

4-acetamidobutanal

4-acetamidobutanoate

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

5-dehydro-D-gluconate

3-deoxy-D-glycero-2,5-hexodiulosonate

3-β-hydroxyandrost-5-en-17-one 3-sulfate

estrone 3-sulfate

aminoacetone

scopolin

α-ribazole

4-hydroxybenzaldehyde

cis-coumarinic acid-β-D-glucoside

4-methylumbelliferyl glucoside

3-keto-L-gulonate 6-phosphate

(4S,5S)-4,5-dihydroxy-2,6-dioxohexanoate

2-dehydro-3-deoxy-D-gluconate

D-gluconate 6-phosphate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

xanthine

(lipoyl)adenylate

3-deoxy-α-D-manno-2-octulosonate

ADP-L-glycero-β-D-manno-heptose

γ-L-glutamyl 5-phosphate

2-methylbutanol

2-methylbutanal

indole-3-glycol

indole-3-glycol aldehyde

3-keto-β-D-galactose

acetyl phosphate

hydrogen peroxide

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

2-dehydro-3-deoxy-D-galactonate

(S)-dihydroorotate

3-ureidopropanoate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

shikimate

shikimate 3-phosphate

4-prenylphlorisobutyrophenone

3-dehydroquinate

3-dehydroshikimate

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

L-histidinol phosphate

histidinol

salicyl alcohol

coproporphyrinogen III

vanillin

(S)-3-methyl-2-oxopentanoate

hydrogenobyrinate a,c-diamide

3-methyl-2-oxobutanoate

hydrogenobyrinate

(2S)-2-isopropylmalate

2-isopropylmaleate

4'-phosphopantetheine

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-aceto-2-hydroxybutanoate

CO₂

carbamoyl phosphate

(S)-2-acetolactate

S-methyl-5'-thioadenosine

5-(methylsulfanyl)-α-D-ribose

1-deoxy-L-glycero-tetrulose 4-phosphate

thiamine diphosphate

diethylphosphate

dimethylthiophosphate

diethylthiophosphate

L-selenocystathionine

dihydroxyacetone

β-D-ribosylnicotinate

(R)-mevalonate

hydrogen selenide

O-acetyl-L-serine

S-ribosyl-L-homocysteine

autoinducer 2

nigerose

N-acetyl-D-muramate 6-phosphate

arsenite

D-galactosamine-6-phosphate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

N-acetyl-D-galactosamine 6-phosphate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

5-amino-6-(D-ribitylamino)uracil

3-deoxy-D-manno-octulosonate 8-phosphate

(S)-2,3,4,5-tetrahydrodipicolinate

2-amino-2-deoxy-D-gluconate 6-phosphate

selenophosphate

(S)-ureidoglycolate

N-carbamoyl-2-oxoglycine

2-dehydro-3-deoxy-D-gluconate 6-phosphate

DNA without lesion

2-O-(6-phospho-α-D-mannosyl)-D-glycerate

α-D-glucosamine 1-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

glycerone phosphate

2-oleoylglycerol

isopentenyl diphosphate

prenyl diphosphate

(R)-5-phosphomevalonate

(R)-mevalonate diphosphate

(R)-1-amino-2-propanol O-2-phosphate

(R)-1-aminopropan-2-ol

porphobilinogen

preuroporphyrinogen

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

5,6-dimethylbenzimidazole

β-nicotinate D-ribonucleotide

α-ribazole 5'-phosphate

oxaloacetate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-phospho-β-D-ribosylamine

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

lipoamide

dihydrolipoamide

S-acetyldihydrolipoamide

lipid X

lipid A disaccharide (E. coli)

orotidine 5'-phosphate

2-phenylethanol

3-methylbutanol

3-methylbutanal

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

isobutanol

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-hydroxyindole thiazolidine carboxylate

ammonia

(3E)-2-oxopent-3-enoate

(2E)-2-hydroxypenta-2,4-dienoate

L-dehydro-ascorbate

glutathione disulfide

L-arginino-succinate

4-amino-2-methyl-5-pyrimidinemethanol

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

1,6-anhydro-N-acetyl-β-muramate

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

histidinal

2-dehydro-3-deoxy-D-galactonate 6-phosphate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

3-phosphooxypyruvate

N⁵-carboxyaminoimidazole ribonucleotide

2-iminoacetate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

4-phosphooxy-L-threonine

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

dialurate

6-aminohexanoate cyclic dimer

6-oxohexanoate

adipate

(2E,6E)-farnesyl diphosphate

pristanate

DNA with lesion

adenosylcobalamin

cob(I)alamin

adenosylcobalamin 5'-phosphate

adenosylcobinamide-GDP

cob(I)inamide

cob(I)yrinate a,c-diamide

cobalt-sirohydrochlorin

cobalt-precorrin-2

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

adenosyl-cob(III)yrinate a,c-diamide

adenosyl-cobinamide phosphate

adenosylcobyrate

adenosylcobinamide

cobalt-factor III

cobalt-precorrin-3

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-5A

protoheme

hydrogen cyanide

uroporphyrinogen-III

protoporphyrinogen IX

uroporphyrinogen-I

protoporphyrin IX

siroheme

oxygen

hydrogen sulfide

L-homocysteine

4-methylphenol

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

2,3-diphospho-D-glycerate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

N-acetyl-D-mannosamine 6-phosphate

1-oleoyl-2-lyso-glycerone phosphate

superoxide

monodehydroascorbate radical

5,10-methenyltetrahydrofolate mono-L-glutamate

2-iminopropanoate

2-iminobutanoate

trimethyl sulfonium

sulfate

selenide

thiosulfate

hydrogencarbonate

phosphonate

phosphate

diphosphate

triphosphate

Fe³⁺

ammonium

Na⁺

H⁺

Ni²⁺

Zn²⁺

Cd²⁺

Cu²⁺

Co²⁺

Fe²⁺

Ca²⁺

methionol

3-(methylsulfanyl)propanal

dimethyl sulfide

glutathione

(R)-S-lactoylglutathione

5-(2-hydroxyethyl)-4-methylthiazole

L-cysteate

3-sulfopyruvate

S-sulfanylglutathione

neolinustatin

linustatin

linamarin

lotaustralin

taxiphyllin

preQ₀

2-hydroxy-2-methylpropanenitrile

(2R)-2-hydroxy-2-methylbutanenitrile

glycine betaine

choline

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

spermidine

putrescine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

glycerophosphoserine

coenzyme A

(R)-lipoate

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

benzyl alcohol

glycerol

L-arabinitol

galactitol

D-mannitol

(3R)-linalool

(3S)-linalool

butan-1-ol

propan-1-ol

methanol

ethanol

phytol

hydroquinone

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

(S)-propane-1,2-diol

(R,R)-2,3-butanediol

FMNH₂

FMN

FAD

(S)-NADHX

(R)-NADHX

NADP⁺

NAD⁺

NADPH

NADH

nicotinamide

thiamine

L-ascorbate

nicotinate

riboflavin

L-carnitine

pyridoxal

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxine

pyridoxamine

all-trans-retinol

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

androsta-1,4-diene-3,17-dione

estrone

3-β-hydroxyandrost-5-en-17-one

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

fluoroacetaldehyde

fluoroacetate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

6-caprolactam

N-acetyl-β-neuraminate

L-serine

β-alanine

(R)-3-amino-2-methylpropanoate

L-glutamate

D-glutamate

L-arginine

L-histidine

L-lysine

L-glutamine

L-leucine

L-proline

glycine

L-alanine

L-tyrosine

L-phenylalanine

L-tryptophan

D-alanine

D-aspartate

L-aspartate

L-asparagine

L-threonine

L-cysteine

L-selenomethionine

L-2-amino-3-oxobutanoate

L-aspartyl-4-phosphate

seleno-L-homocysteine

L-threonine 3-O-phosphate

3-phospho-L-serine

N-carbamoyl-L-aspartate

N-carbamoylglycine

L-2-acetamido-6-oxoheptanedioate

L-valine

L-selenocysteine

L-isoleucine

L-methionine

L-ornithine

L-cystathionine

L,L-diaminopimelate

L-citrulline

S-adenosyl-L-methionine

L-glutamate-5-semialdehyde

O-phospho-L-homoserine

S-adenosyl-L-homocysteine

S-sulfo-L-cysteine

L-aspartate 4-semialdehyde

L-homoserine

O-succinyl-L-homoserine

meso-diaminopimelate

chorismate

(4S)-4-hydroxy-2-oxoglutarate

succinate

fumarate

(S)-malate

3-(carbamoylamino)-2-methylpropanoate

(1E,3E)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate

(R)-lactate

(S)-lactate

acetate

pyruvate

formate

butanoate

decanoate

octanoate

3-phenyl-2-oxopropanoate

2-oxobutanoate

2-oxoglutarate

glyoxylate

2-hydroxy-4-oxobutane-1,2,4-tricarboxylate

(1E)-4-oxobut-1-ene-1,2,4-tricarboxylate

cis-aconitate

D-threo-isocitrate

salicylate

4-aminobenzoate

benzoate

leukotriene-D4

leukotriene-E4

palmitate

(15Z)-tetracosenoate

oleate

phytenate

apo-4'-lycopenoate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

linoleate

D-gluconate

orotate

4-deoxy-L-threo-hex-4-enopyranuronate

(S)-1-pyrroline-5-carboxylate

diacetyl

(R)-acetoin

methylglyoxal

salicylaldehyde

phytenal

1-octanal

butan-1-al

1-propanal

isobutanal

acetaldehyde

(S)-lactaldehyde

phenylacetaldehyde

(4-hydroxyphenyl)acetaldehyde

benzaldehyde

D-glyceraldehyde

L-glyceraldehyde

aldehydo-D-mannose

β-D-mannopyranose

α-D-galactopyranose

β-D-galactopyranose

α-D-glucopyranose

β-D-glucopyranose

α-D-xylopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

aldehydo-L-arabinose

a methyl group

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

3'-ketolactose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

CMP-3-deoxy-β-D-manno-octulosonate

dTDP-4-dehydro-β-L-rhamnose

dTDP-α-D-glucose

dTDP-β-L-rhamnose

GDP-α-D-glucose

GDP-α-D-mannose

ADP-α-D-glucose

ADP-D-ribose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-glucose

UDP-α-D-galactose

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

D-ribulose-1,5-bisphosphate

sucrose 6^G-phosphate

sucrose 6^F-phosphate

β-D-cellobiose 6'-phosphate

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

methyl β-D-glucoside 6-phosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

arbutin-6-phosphate

salicin 6-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

4-phospho-D-erythronate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

β-D-fructose 1,6-bisphosphate

D-tagatofuranose 1,6-bisphosphate

1-deoxy-D-xylulose 5-phosphate

L-xylulose 5-phosphate

D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

D-allulose 6-phosphate

aldehydo-D-allose 6-phosphate

β-D-fructofuranose 6-phosphate

L-ascorbate 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-galactose 6-phosphate

β-D-galactose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

α-D-galactose 1-phosphate

L-fuculose 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-fructofuranose

keto-D-fructose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-mannosamine

N-acetyl-β-D-glucosamine

D-xylulose

raffinose

maltotriose

maltoheptaose

maltotetraose

maltohexaose

maltopentaose

melibiose

allolactose

sucrose

α-kojibiose

α-lactose

β-D-cellobiose

XLLG xyloglucan oligosaccharide

XLXG xyloglucan oligosaccharide

XXLG xyloglucan oligosaccharide

XXXG xyloglucan oligosaccharide

stachyose

heptosyl-Kdo₂-lipid A

(heptosyl)₂-Kdo₂-lipid A

D-galactonate

L-idonate

trans-caffeoyl-CoA

trans-feruloyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

isobutanoyl-CoA

malonyl-CoA

3'-dephospho-CoA

acetyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(E)-glutaconyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

succinyl-CoA

crotonyl-CoA

phytenoyl-CoA

oleoyl-CoA

3-oxodecanoyl-CoA

acetoacetyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

butanoyl-CoA

propanoyl-CoA

palmitoyl-CoA

(Z)-15-tetracosenoyl-CoA

pristanoyl-CoA

decanoyl-CoA

octanoyl-CoA

all-trans-retinyl palmitate

D-glucono-1,5-lactone

tributyrin

1,2-dibutyrin

phlorisovalerophenone

4-prenylphlorisovalerophenone

deoxyhumulone

deoxycohumulone

vanillylamine

4-methylumbelliferone

scopoletin

coumarin

geranyl diphosphate

apo-4'-lycopenal

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

dioleoyl phosphatidate

1-oleoyl-sn-glycerol 3-phosphate

di-trans,octa-cis-undecaprenyl diphosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

urate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

4-tyrosol

parathion

methyl parathion

amino-parathion

3-methoxy-4-hydroxyphenylglycol

coumarinate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

4-nitrophenol

4-aminophenol

paraoxon

reduced riboflavin

6,7-dimethyl-8-(1-D-ribityl)lumazine

guanine

adenine

2'-deoxyguanosine

2'-deoxyadenosine

2'-deoxyinosine

adenosine

inosine

guanosine

xanthosine

hypoxanthine

dIMP

dATP

dGTP

dITP

dADP

dGDP

GTP

ATP

XTP

ITP

GDP

ADP

GMP

IMP

XMP

AMP

hydantoin

sirohydrochlorin

precorrin-1

precorrin-7

precorrin-8x

precorrin-2

precorrin-3A

precorrin-5

precorrin-3B

precorrin-4

precorrin-6B

precorrin-6A

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

uridine 2'-monophosphate

cytidine 2'-monophosphate

uridine 3'-monophosphate

cytidine-3'-monophosphate

dCTP

dUTP

5,6-dihydrouracil

5,6-dihydrothymine

dCMP

dCDP

CDP

dUMP

dTMP

dTDP

UTP

CTP

uracil

UDP

dUDP

dTTP

cytidine

uridine

2'-deoxycytidine

thymidine

2'-deoxyuridine

thymine

CMP

UMP

preQ₁

guanosine 2',3'-cyclic monophosphate

adenosine 2',3'-cyclic monophosphate

adenosine 2'-monophosphate

guanosine 2'-monophosphate

adenosine 3'-monophosphate

guanosine 3'-monophosphate

pppGpp

ppGpp

adenylo-succinate

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA