an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

L-dehydro-ascorbate

α-D-galacturonate 1-phosphate

(+)-5-oxo-1,2-campholide

(+)-bornane-2,5-dione

Δ^2,5-3,4,4-trimethylpimeloyl-CoA

(-)-5-oxo-1,2-campholide

[(1R)-4,5,5-trimethyl-2-oxocyclopent-3-enyl]acetate

(1S)-bornane-2,5-dione

[(2R)-3,3,4-trimethyl-6-oxo-3,6-dihydro-1H-pyran-2-yl]acetyl-CoA

[(1R)-2,2,3-trimethyl-5-oxocyclopent-3-enyl]acetyl-CoA

pseudouridine

6-(2-amino-2-carboxylatoethyl)-7-hydroxy-8-oxo-1,2,3,4,7,8-hexahydroquinoline-2,4-dicarboxylate

2-amino-4-[5-(2-amino-2-carboxylatoethyl)-2-hydroxyphenyl]pentanedioate

2-amino-4-[3-(2-amino-2-carboxylatoethyl)-6-oxocyclohexa-1,4-dien-1-yl]pentanedioate

6-(2-amino-2-carboxylatoethyl)-1,2,3,4-tetrahydroquinoline-2,4-dicarboxylate

1,4-dihydroxy-2-naphthoyl-CoA

1,4-dihydroxy-2-naphthoate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

isochorismate

selenodiglutathione

glutathioselenol

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

mercuriphenyl acetate

N⁵-carboxyaminoimidazole ribonucleotide

2-amino-3-carboxymuconate-6-semialdehyde

1-deoxy-L-glycero-tetrulose 4-phosphate

S-ribosyl-L-homocysteine

autoinducer 2

6-oxohexanoate

adipate

γ-butyrobetaine

5-oxo-L-proline

1,6-anhydro-N-acetyl-β-muramate

chloroacetaldehyde

core oligosaccharide-lipid A (E. coli K-12 core type)

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

dialurate

ectoine

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

H₂

DNA without lesion

ADP-L-glycero-β-D-manno-heptose

carbon monoxide

methylamine

N-ethylglycine

ethylamine

2-iminoacetate

6-amino-2-oxohexanoate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

nigerose

urea-1-carboxylate

4-acetamidobutanal

4-acetamidobutanoate

(S)-2,3,4,5-tetrahydrodipicolinate

O-ureido-L-homoserine

(E)-2-benzylidenesuccinyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

(S)-ureidoglycolate

(5S)-5-benzyl-hydantoin

(5R)-5-benzyl-hydantoin

2-methyl-1,4-benzoquinone

methyl-1,4-benzoquinol

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

α-D-glucosamine 1-phosphate

GMP-N-ε-(N-α-acetyl lysine methyl ester) 5'-phosphoramidate

4-prenylphlorisobutyrophenone

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

3-oxopropanoate

4-aminobutanoate

oxalosuccinate

L-gulono-1,4-lactone

L-xylo-hex-3-ulono-1,4-lactone

(2S)-4-acetamido-2-aminobutanoate

6-aminohexanoate cyclic dimer

α-ribazole

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

(R)-1-amino-2-propanol O-2-phosphate

4-methyl-3-oxoadipate

(+)-muconolactone

3-methylmuconolactone

4-methyl-3-oxoadipate-enol-lactone

muconolactone

(4,5-dihydro-5-oxofuran-2-yl)-acetate

cis,cis-muconate

β-D-ribosylnicotinate

preuroporphyrinogen

canavaninosuccinate

L-canavanine

L-arginino-succinate

secologanin

tryptamine

3-α(S)-strictosidine

(R)-pantothenate

(S)-4-amino-5-oxopentanoate

4-amino-2-methyl-5-pyrimidinemethanol

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

5-dehydro-4-deoxy-D-glucarate

(2S,3S)-2,3-dihydroxy-5-oxohexanedioate

thiamine phosphate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

(1S,4S)-2,5-dichloro-2,5-cyclohexadiene-1,4-diol

(3R,6R)-1,3,4,6-tetrachlorocyclohexa-1,4-diene

(1S,4R)-2,4,5-trichloro-2,5-cyclohexadiene-1-diol

1,2-dichloroethane

2-chloroethanol

γ-L-glutamyl 5-phosphate

nicotinate adenine dinucleotide

S-formylglutathione

acetoacetate

cyanate

(R)-2,3-dihydroxy-3-methylpentanoate

(25S)-3α,7α-dihydroxy-5β-cholestanoyl-CoA

shikimate

shikimate 3-phosphate

carbonic acid

5-amino-6-(D-ribitylamino)uracil

5-deoxy-α-ribose 1-phosphate

S-methyl-5'-thioadenosine

selenophosphate

6-phospho D-glucono-1,5-lactone

D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

N-carbamoylputrescine

lipid IV_A

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

α-D-galactosyl-diphosphoundecaprenol

3'-phosphoadenylyl-sulfate

4-amino-4-deoxychorismate

5-enolpyruvoyl-shikimate 3-phosphate

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

(S)-2-amino-6-oxohexanoate

cyclopentanol

cyclopentanone

(S)-3-methyl-2-oxopentanoate

glutathione disulfide

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

enol-phenylpyruvate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-hydroxyindole thiazolidine carboxylate

bisorganyltrisulfane

ammonia

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

pyruvic oxime

1-piperideine-2-carboxylate

1-piperideine 6-carboxylate

5-aminopentanoate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

orotidine 5'-phosphate

prephenate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

2-dehydropantoate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

β-nicotinate D-ribonucleotide

quinolinate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

3-methyl-2-oxobutanoate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

acetyl phosphate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

S-methyl-5-thio-α-D-ribose 1-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

3-demethylubiquinol-6

lipid X

lipid A disaccharide (E. coli)

2-C-methyl-D-erythritol 4-phosphate

isopentenyl diphosphate

2-oxoglutaramate

histidinal

3-deoxy-D-manno-octulosonate 8-phosphate

3-deoxy-α-D-manno-2-octulosonate

N-acetyl-D-muramate 6-phosphate

2-amino-2-deoxy-D-gluconate 6-phosphate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

pimeloyl-CoA

dethiobiotin

prenyl diphosphate

3-phosphooxypyruvate

2-succinylbenzoate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

4-methyl-2-oxopentanoate

urea

8-amino-7-oxononanoate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

7,8-diaminopelargonate

coproporphyrinogen III

hydroxylamine

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

L-histidinol phosphate

histidinol

6-aminohexanoate linear dimer

6-aminohexanoate

methylsalicylate

salicyl alcohol

N²-succinyl-L-ornithine

N²-succinyl-L-arginine

N-acetyl-L-glutamate 5-semialdehyde

N-succinyl-L,L-2,6-diaminopimelate

N-succinyl-2-amino-6-ketopimelate

dihydrolipoamide

S-acetyldihydrolipoamide

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

glycerone phosphate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

2-phenylethanol

2-methylbutanol

2-methylbutanal

3-methylbutanol

3-methylbutanal

isobutanol

indole-3-glycol

indole-3-glycol aldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

6-(2-amino-2-carboxyethyl)-7,8-dioxo-1,2,3,4,7,8-hexahydroquinoline 2,4-dicarboxylate

hydrogen peroxide

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

3-dehydroquinate

3-dehydroshikimate

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

3-deoxy-D-arabino-heptulosonate 7-phosphate

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

2-phosphoglycolate

glycolate

N-(5-phosphoribosyl)-anthranilate

anthranilate

4-hydroxy-2-nonenal

2-oleoylglycerol

S-adenosyl 3-(methylsulfanyl)propylamine

N-acetylglutamyl-phosphate

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

coniferaldehyde

4'-phosphopantetheine

5-aminolevulinate

porphobilinogen

hypotaurine

pseudouridine 5'-phosphate

2-maleylacetate

succinate semialdehyde

citrate

hydrogen selenide

O-acetyl-L-serine

ethanolamine

hydroxypyruvate

tartronate semialdehyde

oxaloacetate

CO₂

phosphoenolpyruvate

(S)-dihydroorotate

carbamoyl phosphate

L-selenocystathionine

2,3-didehydroadipyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

(-)-exo-3-hydroxycamphor

(+)-exo-5-hydroxycamphor

formamide

propionamide

(indol-3-yl)acetamide

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

H₂O

(2E,6E)-farnesyl diphosphate

pristanate

carbamate

L-α-amino-ε-keto-pimelate

L-citrulline

L-methionine

L-tyrosine

L-lysine

L-proline

L-asparagine

L-valine

L-isoleucine

L-histidine

L-leucine

L-tryptophan

L-alanine

L-arginine

L-threonine

L-phenylalanine

L-serine

L-aspartate

glycine

L-glutamine

L-glutamate

L-cysteine

L-glutamate-5-semialdehyde

L-homoserine

O-phospho-L-homoserine

O-succinyl-L-homoserine

L-aspartate 4-semialdehyde

L-4-hydroxyglutamate semialdehyde

L-ornithine

3-sulfino-L-alanine

S-sulfo-L-cysteine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-homocysteine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-selenocysteine

L-2,4-diaminobutanoate

L-aspartyl-4-phosphate

L,L-diaminopimelate

L-cystathionine

N-formyl-L-methionine

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-carbamoyl-L-aspartate

β-alanine

(S)-3-amino-2-methylpropanoate

D-glutamate

D-lysine

D-alanine

L-selenomethionine

L-saccharopine

2-hydroxy-5-oxoproline

seleno-L-homocysteine

L-threonine 3-O-phosphate

3-phospho-L-serine

sarcosine

N-acetyl-L-methionine

N-acetyl-L-glutamate

N-α-acetyl lysine methyl ester

O-acetyl-L-homoserine

4-methylphenol

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

a mismatched DNA base pair

a properly matched DNA base pair

phenylacetate

ethylphosphate

phosphonoacetaldehyde

adenosylcobalamin

cob(I)alamin

cobalt-factor III

cobalt-precorrin-3

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-5A

cob(II)yrinate c-monoamide

cobyrinate

adenosylcobyrate

cobalt-sirohydrochlorin

cobalt-precorrin-2

adenosylcobinamide-GDP

adenosyl-cobinamide phosphate

adenosylcobalamin 5'-phosphate

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

cob(I)yrinate a,c-diamide

cob(II)yrinate a,c-diamide

protoheme

hydrogen cyanide

N₂

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrin IX

protoporphyrinogen IX

uroporphyrinogen-III

siroheme

S⁰

Hg⁰

hydrogen sulfide

oxygen

2-chloroacetate

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

2,3-diphospho-D-glycerate

2-O-(α-D-mannosyl)-3-phospho-D-glycerate

2-O-(α-D-mannosyl)-D-glycerate

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

N-acetyl-D-mannosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

N-acetyl-β-neuraminate 9-phosphate

1-oleoyl-2-lyso-glycerone phosphate

CMP-N-acetyl-β-neuraminate

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

5,10-methenyltetrahydrofolate mono-L-glutamate

3-(all-trans-octaprenyl)benzene-1,2-diol

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

2-iminosuccinate

2-iminobutanoate

2-iminopropanoate

superoxide

hydroxyl radical

monodehydroascorbate radical

nitric oxide

4-nitrobenzyl alcohol

4-nitrobenzaldehyde

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

N-acetyl-β-neuraminate

S-(hydroxymethyl)glutathione

dimethyl sulfide

methionol

3-(methylsulfanyl)propanal

glutathione

thiocyanate

methanethiol

cysteamine

S-sulfanylglutathione

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

3-sulfopyruvate

L-cysteate

taurine

(R)-S-lactoylglutathione

trimethyl sulfonium

sulfate

sulfite

selenite

selenate

selenide

thiosulfate

OH^-

nitrite

nitrate

hydrogensulfite

hydrogencarbonate

molybdate

chloride

phosphonate

phosphate

triphosphate

diphosphate

Fe³⁺

Zn²⁺

Mn²⁺

Mg²⁺

Cu²⁺

Hg²⁺

Fe²⁺

Ca²⁺

Co²⁺

K⁺

H⁺

ammonium

glycine betaine

betaine aldehyde

choline

betaine aldehyde hydrate

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

agmatine

N¹-acetylspermidine

N¹-acetylspermine

N-acetylputrescine

spermidine

spermine

putrescine

sn-glycero-3-phosphocholine

sn-glycero-3-phosphoethanolamine

glycerophosphoserine

glycerophosphoglycerol

1-oleoyl-2-palmitoyl-phosphatidylglycerol

2,5-dichlorophenol

acetamide

6-caprolactam

5-amino-4-imidazolecarboxyamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

nicotinamide

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

chenodeoxycholate

cholate

(+)-7-epi-jasmonate

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

dodecyl icosanoate

γ-butyrobetainyl-CoA

phenylacetyl-CoA

dihomo γ-linolenoyl-CoA

3-methylcrotonyl-CoA

2E)-tetradec-2-enoyl-CoA

(2E,5Z)-tetradecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

L-carnitinyl-CoA

crotonobetainyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(25R)-3α,7α,12α-trihydroxy-5β-cholestanoyl-CoA

(25S)-3α,7α,12α-trihydroxy-5β-cholestanoyl-CoA

(25R)-3α,7α-dihydroxy-5β-cholestanoyl-CoA

isovaleryl-CoA

isobutanoyl-CoA

2-methylbutanoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

4-hydroxybenzoyl-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

2-trans, 4-trans-undecadienoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

(3E)-undec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

malonyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

2-methylacetoacetyl-CoA

succinyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

3'-dephospho-CoA

chenodeoxycholoyl-CoA

choloyl-CoA

3-hydroxyisovaleryl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

methylacrylyl-CoA

acetyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E)-octadec-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(2E)-dodec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(S)-malyl-CoA

(3Z)-dodec-3-enoyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(Z)-15-tetracosenoyl-CoA

butanoyl-CoA

propanoyl-CoA

hexanoyl-CoA

lauroyl-CoA

decanoyl-CoA

octanoyl-CoA

myristoyl-CoA

icosanoyl-CoA

palmitoyl-CoA

stearoyl-CoA

pristanoyl-CoA

hexadecanedioyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxoadipyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

3-oxododecanoyl-CoA

3-oxooctanoyl-CoA

3-oxohexanoyl-CoA

3-oxodecanoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

all-trans-retinyl palmitate

L-galactono-1,4-lactone

trans-dienelactone

cis-dienelactone

D-glucono-1,5-lactone

tributyrin

1-oleoyl-sn-glycerol

1,2-dibutyrin

FADH₂

FMNH₂

FMN

FAD

(S)-NADHX

(R)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

ubiquinol-10

ubiquinol-7

ubiquinol-6

ubiquinol-8

ubiquinol-9

3-demethylubiquinol-10

3-demethylubiquinol-7

3-demethylubiquinol-8

3-demethylubiquinol-9

molybdopterin

coenzyme A

MoO₂-molybdopterin cofactor

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

thiamine

nicotinate

riboflavin

L-ascorbate

pyridoxine

pyridoxal

pyridoxamine

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

L-carnitine

menadione

all-trans-retinol

(S)-1-pyrroline-5-carboxylate

precorrin-1

precorrin-2

sirohydrochlorin

6,7-dimethyl-8-(1-D-ribityl)lumazine

molybdopterin adenine dinucleotide

cyclic pyranopterin phosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydromonapterin

7,8-dihydroneopterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

adenine

guanine

2'-deoxyadenosine

2'-deoxyguanosine

guanosine

inosine

xanthosine

adenosine

hypoxanthine

dAMP

dGMP

dITP

dGTP

dATP

dIDP

dGDP

dADP

IDP

GDP

ADP

XMP

IMP

GMP

AMP

ITP

GTP

ATP

dTMP

dTDP

orotate

dCMP

dCTP

dTTP

dUTP

dUMP

CTP

uracil

dUDP

UDP

dCDP

CDP

UTP

UDP-α-D-galacturonate

UDP-α-D-galactofuranose

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-β-L-iduronate

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-α-D-glucuronate

UDP-α-D-glucose

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

dTDP-α-D-glucose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

cytidine

uridine

UMP

CMP

isoguanine

preQ₁

baicalein

6,7-dehydrobaicalein

acrylonitrile

(indole-3-yl)acetonitrile

preQ₀

salicylaldehyde

benzene

2-[(1R,6S)-1,6-dihydroxycyclohexa-2,4-dien-1-yl]acetyl-coA

4-hydroxybenzoate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

4-tyrosol

toluene

3-methoxy-4-hydroxyphenylglycol

benzaldehyde

phenylacetaldehyde

(4-hydroxyphenyl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

menadiol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

catechol

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

enterobactin

ferulate

salicylate

4-aminobenzoate

benzoate

chorismate

fumarate

succinate

(S)-malate

D-glucarate

D-galactarate

(2R)-homocitrate

(2R,3S)-2-methylisocitrate

(2S,3S)-2-methylcitrate

cis-2-methylaconitate

cis-homoaconitate

cis-aconitate

D-threo-isocitrate

(R)-3-hydroxybutanoate

(S)-lactate

(R)-lactate

pyruvate

acetate

formate

propanoate

butanoate

decanoate

octanoate

3-oxoadipate

1-palmitoyl-2-linoleoyl-phosphatidylcholine

1-linoleoyl-sn-glycero-3-phosphocholine

(15Z)-tetracosenoate

oleate

(3E,5Z)-tetradecadienoate

(9Z,12Z)-15,16-epoxyoctadeca-9,12-dienoate

(9Z,12Z)-15,16-dihydroxyoctadeca-9,12-dienoate

(12Z,15Z)-9,10-epoxyoctadeca-12,15-dienoate

(12Z,15Z)-9,10-dihydroxyoctadeca-12,15-dienoate

(9Z,15Z)-12,13-epoxy-octadeca-9,15-dienoate

(9Z,15Z)-12,13-dihydroxyoctadeca-9,15-dienoate

apo-4'-lycopenoate

di-homo-γ-linolenate

γ-linolenate

linoleate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

α-linolenate

phytenate

stearate

palmitate

8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-enyl}cyclopentyl]octanoate

dinor-12-oxo-phytodienoate

D-gluconate

(R)-pantoate

aldehydo-D-glucuronate

aldehydo-D-galacturonate

3-phenyl-2-oxopropanoate

2-oxobutanoate

glyoxylate

2-oxoglutarate

a coenzyme-A group

methylglyoxal

diacetyl

pyrroloquinoline quinone

glycolaldehyde

butan-1-al

1-octanal

formaldehyde

isobutanal

1-propanal

acetaldehyde

(S)-lactaldehyde

phytenal

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

butan-1-ol

propan-1-ol

ethanol

methanol

1-dodecanol

1-octanol

phytol

glycerol

D-arabinitol

(3R)-linalool

(3S)-linalool

3,5-cyclohexadiene-1,2-diol-1-carboxylate

myo-inositol

scyllo-inosose

1-amino-1-deoxy-scyllo-inositol

1D-myo-inositol 2-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 4-monophosphate

1D-myo-inositol 3-monophosphate

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-oleoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

geranyl diphosphate

all-trans-octaprenyl diphosphate

geranylgeranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

apo-4'-lycopenal

phytyl diphosphate

3-octaprenyl-4-hydroxybenzoate

galactosyl-glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₃-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₂-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₂-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₂-Kdo₂-lipid A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

heptosyl-Kdo₂-lipid A

(heptosyl)₂-Kdo₂-lipid A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

α-Kdo-(2→6)-lipid IV_A

phlorisovalerophenone

deoxyhumulone

4-prenylphlorisovalerophenone

deoxycohumulone

betanidin

betanidin quinone

ferric-enterobactin complex

1-(β-D ribofuranosyl)nicotinamide

maltotriose

maltotetraose

maltoheptaose

maltohexaose

maltopentaose

sucrose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

β-D-fructofuranose

D-xylulose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (E. faecium, tetrapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-ribulose-1,5-bisphosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

ADP-α-D-glucose

GDP-α-D-mannose

GDP-α-D-mannuronate

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

4-phospho-D-erythronate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

α-D-galactose 6-phosphate

β-D-galactose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

aldehydo-L-galactonate

L-gulonate

pppGpp

ppGpp

8-oxo-GTP

8-oxo-dGTP

cyclic-AMP

adenylo-succinate

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

2-hydroxy-dATP

5-hydroxy-CTP

β-nicotinamide D-ribonucleotide

cyclic di-3',5'-guanylate