an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

anthranilate

N-(5-phosphoribosyl)-anthranilate

(E)-3-(methoxycarbonyl)pent-2-enedioate

salicyl alcohol

N²-succinylglutamate

N²-succinyl-L-ornithine

N²-succinyl-L-arginine

N²-succinyl-L-glutamate 5-semialdehyde

selenophosphate

3-dehydroquinate

L-quinate

5-amino-6-(D-ribitylamino)uracil

4-hydroxy-2-nonenal

2-dehydro-3-deoxy-D-gluconate 6-phosphate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

(S)-5-hydroxyisourate

5,6-dimethylbenzimidazole

S-formylglutathione

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

L-histidinol phosphate

imidazole acetol-phosphate

histidinol

histidinal

3-demethylubiquinol-6

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N-succinyl-L,L-2,6-diaminopimelate

acetyl phosphate

O-acetyl-L-serine

hydrogen selenide

oxalate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

(E)-4-coumaroyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

2,3-didehydroadipyl-CoA

β-D-ribosylnicotinate

1,4-dihydroxy-2-naphthoyl-CoA

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

2-succinylbenzoate

ethanolamine

cis-3-phenylcyclohexa-3,5-diene-1,2-diol

3-amino-1-hydroxyacetone 1-phosphate

adenosine 3',5'-bisphosphate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

3'-phosphoadenylyl-sulfate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

autoinducer 2

S-ribosyl-L-homocysteine

urea

prenyl diphosphate

3-deoxy-D-glycero-2,5-hexodiulosonate

3-dehydro-2-deoxy-D-gluconate

2-deoxygluconate

5-dehydro-4-deoxy-D-glucarate

1-deoxy-L-glycero-tetrulose 4-phosphate

L-selenocystathionine

(2S,3S)-2,3-dihydroxy-5-oxohexanedioate

1-pyrroline

α-D-glucosamine 1-phosphate

L-arginino-succinate

canavaninosuccinate

O-ureido-L-homoserine

enol-phenylpyruvate

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

L-canavanine

diethylthiophosphate

dimethylthiophosphate

diethylphosphate

(S)-3-methyl-2-oxopentanoate

(R)-2,3-dihydroxy-3-methylpentanoate

preuroporphyrinogen

2-dehydro-3-deoxy-D-galactonate

4-imidazoleacetate

imidazole acetaldehyde

5-hydroxyindole acetate

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

3,4-dihydroxyphenylacetaldehyde

propynoate

prop-2-ynal

D-glucurono-6,3-lactone

4-acetamidobutanoate

4-acetamidobutanal

dimethylsulfoniopropanoate

5-hydroxytryptophol

indole-3-glycol aldehyde

indole-3-glycol

isobutanol

3-methylbutanal

3-methylbutanol

2-methylbutanal

2-methylbutanol

2-phenylethanol

aminoacetone

ADP-L-glycero-β-D-manno-heptose

ADP-D-glycero-β-D-manno-heptose

(R)-4'-phosphopantothenoyl-L-cysteine

glycolate

2-phosphoglycolate

glutathione disulfide

2-keto-D-gluconate

2-dehydro-3-deoxy-D-gluconate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

(lipoyl)adenylate

(4Z)-2-oxohept-4-enedioate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

5-carboxymethyl-2-hydroxymuconate

2-hydroxy-5-carboxymethylmuconate semialdehyde

(4-hydroxyphenyl)acetate

(2S,5S)-5-carboxymethyl proline

(4S)-4-hydroxy-2-oxoheptanedioate

3-keto-L-gulonate 6-phosphate

glutathionylspermidine

methylsalicylate

4-amino-4-deoxy-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

4-deoxy-4-formamido-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

UDP-4-deoxy-4-formamido-β-L-arabinopyranose

acetoacetate

4-fumaryl-acetoacetate

GMP-N-ε-(N-α-acetyl lysine methyl ester) 5'-phosphoramidate

4-pyridoxolactone

α-D-glucopyranosyl-diphosphoundecaprenol

D-erythro-imidazole-glycerol-phosphate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

7-carboxy-7-deazaguanine

3,4,4-trihydroxy-5-phosphooxypentan-2-one

3-hydroxy-5-phosphooxypentane-2,4-dione

2-deoxy-D-glucose

2-deoxy-D-glucose 6-phosphate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

hydroxyacetone

dimethyl sulfoxide

hydroxylamine

DNA without lesion

urea-1-carboxylate

1,4-dihydroxy-2-naphthoate

luteolin 7-O-β-D-glucuronide

luteolin 7-O-β-D-diglucuronide

luteolin 7-O-[β-D-glucosyluronate-(1,2)-β-D-glucosiduronate]-4'-O-β-D-glucosiduronate

2,3-dioxo-L-gulonate

3-keto-L-gulonate

3-keto-β-D-galactose

L-tartrate

4-(γ-L-glutamylamino)butanoate

4-(γ-L-glutamylamino)butanal

propionamide

(indol-3-yl)acetamide

4-guanidinobutanoate

4-guanidinobutyramide

acrylate

acrylamide

N-(2,3-dihydroxybenzoyl)-L-serine trimer

N-(2,3-dihydroxybenzoyl)-L-serine

N-(2,3-dihydroxybenzoyl)-L-serine dimer

lipid A-core 1-diphosphate

core oligosaccharide-lipid A (E. coli K-12 core type)

pseudouridine 5'-phosphate

pseudouridine

N⁵-carboxyaminoimidazole ribonucleotide

(S)-ureidoglycolate

2-dehydro-3-deoxy-D-galactonate 6-phosphate

2-maleylacetate

D-glycero-β-D-manno-heptose 1-phosphate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

(enterobacterial common antigen)-undecaprenyl diphosphate

N-acetyl-β-D-mannosaminuronyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol

hydroxypyruvate

(R)-1-amino-2-propanol O-2-phosphate

dialurate

dehydroascorbate (bicyclic form)

L-dehydro-ascorbate

ammonia

enolaldehyde

2-oxopent-4-enoate

(3E)-2-oxopent-3-enoate

(2E)-2-hydroxypenta-2,4-dienoate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-formyl-3-hydroxy-2-methylpyridine-4-carboxylate

3-hydroxy-2-methylpyridine-4,5-dicarboxylate

3-hydroxy-2-methylpyridine-5-carboxylate

(2Z)-2-(acetamidomethylene)succinate

homogentisate

4-maleyl-acetoacetate

carbon monoxide

γ-butyrobetaine

octopamine

methylamine

(R)-synephrine

5-oxo-L-proline

glutathioselenol

selenodiglutathione

2-iminoacetate

2,6-dioxo-6-phenylhexa-3-enoate

2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

4-amino-2-methyl-5-pyrimidinemethanol

2-amino-3-carboxymuconate-6-semialdehyde

oxamate

N-carbamoyl-2-oxoglycine

pyruvic oxime

2-carboxy-L-xylonolactone

cyclic-2,3-O-oxalyl-L-threonate

5-hydroxyindole thiazolidine carboxylate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

cyclic- 3,4-O-oxalyl-L-threonate

2-carboxy-L-threo-pentonate

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(R)-4'-phosphopantothenate

(R)-pantothenate

CO₂

thiamine phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

coproporphyrinogen III

H₂O

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

3-dehydroshikimate

shikimate

2-dehydropantoate

3-methyl-2-oxobutanoate

carbonic acid

S-methyl-5'-thioadenosine

S-adenosyl 3-(methylsulfanyl)propylamine

citrate

S-acetyldihydrolipoamide

dihydrolipoamide

thiamine diphosphate

2-(α-hydroxyethyl)thiamine diphosphate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

quinolinate

β-nicotinate D-ribonucleotide

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

(2S)-2-isopropylmalate

2-oxovalerate

3-ethylmalate

4-methyl-2-oxopentanoate

(2S)-2-isopropyl-3-oxosuccinate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

lipid A disaccharide (E. coli)

lipid X

isopentenyl diphosphate

2-C-methyl-D-erythritol 4-phosphate

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

5-(methylsulfanyl)-α-D-ribose

5-aminolevulinate

(S)-4-amino-5-oxopentanoate

5-amino-6-(5-phospho-D-ribosylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

4'-phosphopantetheine

shikimate 3-phosphate

γ-L-glutamyl 5-phosphate

2-aminoacetaldehyde

porphobilinogen

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

carbamoyl phosphate

tartronate semialdehyde

3-deoxy-D-arabino-heptulosonate 7-phosphate

phosphoenolpyruvate

oxaloacetate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

(2,3-dihydroxybenzoyl)adenylate

(L-aspartyl)adenylate

D-gluconate 6-phosphate

6-phospho D-glucono-1,5-lactone

α-ribazole

α-ribazole 5'-phosphate

nicotinate adenine dinucleotide

xanthine

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

2-amino-2-deoxy-D-gluconate 6-phosphate

glycerone phosphate

dihydroxyacetone

N-acetyl-D-muramate 6-phosphate

5'-phosphoguanylyl(3'→5')guanosine

dethiobiotin

7,8-diaminopelargonate

8-amino-7-oxononanoate

pimeloyl-CoA

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

5-enolpyruvoyl-shikimate 3-phosphate

3-phosphooxypyruvate

4-phosphooxy-L-threonine

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

3-deoxy-α-D-manno-2-octulosonate

lipid IV_A

H₂

(S)-dihydroorotate

3-deoxy-D-manno-octulosonate 8-phosphate

oxalosuccinate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

1,6-anhydro-N-acetyl-β-muramate

4-amino-4-deoxychorismate

hydrogen peroxide

succinate semialdehyde

4-aminobutanoate

3-oxopropanoate

γ-glutamyl-L-putrescine

orotidine 5'-phosphate

(2E,6E)-farnesyl diphosphate

2-iminopropanoate

2-iminosuccinate

2-iminobutanoate

4-[(2Z)-2-(methylimino)ethyl]phenol

4-(2-iminoethyl)phenol

L-homocysteine

4-methylphenol

hypoglycin B

L-α-amino-ε-keto-pimelate

L-tryptophan

L-phenylalanine

L-selenocysteine

L-isoleucine

L-valine

L-methionine

L-cysteine

glycine

L-alanine

L-proline

L-leucine

L-arginine

L-ornithine

L-tyrosine

L-histidine

L,L-diaminopimelate

L-cystathionine

L-aspartyl-4-phosphate

L-aspartate

L-lysine

L-glutamate

L-glutamine

L-asparagine

L-serine

L-threonine

N-carbamoyl-L-aspartate

N⁶-acetyl-N⁶-hydroxy-L-lysine

N-acetyl-L-ornithine

N-acetyl-L-citrulline

L-citrulline

S-sulfo-L-cysteine

O-succinyl-L-homoserine

L-homoserine

hypoglycin A

L-aspartate 4-semialdehyde

O-phospho-L-homoserine

S-adenosyl-L-methionine

L-glutamate-5-semialdehyde

S-adenosyl-L-homocysteine

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

seleno-L-homocysteine

L-selenomethionine

L-2-amino-3-oxobutanoate

3-phospho-L-serine

N-α-acetyl lysine methyl ester

N⁶-hydroxy-L-lysine

N-acetyl-L-glutamate

N-acetyl-L-methionine

sarcosine

D-serine

D-methionine

D-alanine

D-glutamate

β-alanine

(S)-3-amino-2-methylpropanoate

guanosine 2',3'-cyclic monophosphate

adenosine 2',3'-cyclic monophosphate

GDP

dADP

dATP

dGDP

2'-deoxyinosine

2'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

ITP

IDP

dITP

dIDP

XMP

ppGpp

pppGpp

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

adenosine 3'-monophosphate

guanosine 3'-monophosphate

dIMP

XTP

dAMP

dGMP

isoguanine

8-oxo-dGTP

8-oxo-GTP

ADP

ATP

AMP

GMP

hypoxanthine

IMP

2'-deoxyguanosine

dGTP

5'-deoxyadenosine

adenylo-succinate

GTP

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

ADP-α-D-glucose

GDP-4-dehydro-α-D-rhamnose

GDP-α-D-mannose

GDP-α-D-glucose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-α-D-glucose

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

dTDP-viosamine

dTDP-4-acetamido-4,6-dideoxy-α-D-galactose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-mannosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-α-D-glucuronate

UDP-β-L-threo-pentapyranos-4-ulose

UDP-4-amino-4-deoxy-β-L-arabinopyranose

UDP-α-D-galactofuranose

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

CMP-3-deoxy-β-D-manno-octulosonate

guanine

adenine

uracil

thymine

cytosine

preQ₁

N¹-ethyladenine

N3-methylcytosine

N¹-methyladenine

NADP⁺

NAD⁺

NADPH

NADH

cytidine-3'-monophosphate

uridine 3'-monophosphate

cyclic di-3',5'-guanylate

uridine 2'3'-cyclic monophosphate

cytidine 2',3'-cyclic monophosphate

dUMP

dCMP

dTMP

dUDP

dCDP

dTDP

dUTP

dCTP

dTTP

UDP

CDP

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

β-nicotinamide D-ribonucleotide

UTP

CTP

UMP

CMP

2-hydroxy-dATP

5-hydroxy-CTP

2'-deoxyuridine

2'-deoxycytidine

thymidine

inosine

adenosine

xanthosine

guanosine

uridine

cytidine

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

5'-deoxy-5'-fluoroadenosine

D-galactonate

D-gluconate

D-mannonate

D-altronate

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

3'-ketolactose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

1-O-acetyl-α-maltose

arbutin-6-phosphate

salicin 6-phosphate

methyl β-D-glucoside 6-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

4-phospho-D-erythronate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

L-fuculose 1-phosphate

L-rhamnulose 1-phosphate

α-D-galactose 1-phosphate

α-D-mannose 1-phosphate

α-D-glucopyranose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-galactose 6-phosphate

β-D-galactose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-tagatofuranose 1,6-bisphosphate

D-tagatofuranose 6-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

L-ascorbate 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-ribose-1-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

L-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

L-glyceraldehyde 3-phosphate

D-glyceraldehyde 3-phosphate

N-monoacetylchitobiose 6'-phosphate

sucrose 6^F-phosphate

N,N'-diacetylchitobiose 6'-phosphate

β-D-cellobiose 6'-phosphate

α,α-trehalose 6-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

D-ribulose-1,5-bisphosphate

a peptidoglycan dimer (mycobacteria)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

β-L-rhamnopyranose

α-L-rhamnopyranose

α-L-fucopyranose

β-L-fucopyranose

β-D-fructofuranose

keto-D-fructose

keto-L-sorbose

glycolaldehyde

aldehydo-D-ribose

β-D-ribopyranose

α-D-ribofuranose

β-D-ribofuranose

β-D-galactopyranose

α-D-galactopyranose

β-D-glucopyranose

α-D-glucopyranose

D-glyceraldehyde

D-xylulose

D-ribulose

L-ribulose

L-fuculose

keto-L-rhamnulose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-mannosamine

N-acetyl-β-D-glucosamine

N-acetyl-β-neuraminate

N-acetyl-α-neuraminate

glycerol

L-iditol

D-sorbitol

XXXG xyloglucan oligosaccharide

maltotriose

galactosyl-(glucosyl)₃-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₂-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

4'-α-L-Ara4N-α-Kdo-(2→4)-α-Kdo-(2→6)-[P4'-α-L-ara4N]-lipid A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

(heptosyl)₂-Kdo₂-lipid A

heptosyl-Kdo₂-lipid A

heptosyl-Kdo₂-lipid IV_A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-phosphate

α-Kdo-(2→6)-lipid IV_A

glucosyl-(heptosyl)₂-Kdo₂-lipid A

glucosyl-(heptosyl)₂-Kdo₂-lipid A-phosphate

galactosyl-glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

allolactose

sucrose

α-lactose

α,α-trehalose

maltohexaose

maltotetraose

maltopentaose

maltoheptaose

XLLG xyloglucan oligosaccharide

XLXG xyloglucan oligosaccharide

XXLG xyloglucan oligosaccharide

aldehydo-D-galacturonate

salicylaldehyde

all-trans-retinol

all-trans-retinyl palmitate

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

geranyl diphosphate

apo-4'-lycopenal

apo-4'-lycopenoate

enterobactin

vibriobactin

aerobactin

N¹-citryl-N⁶-acetyl-N⁶-hydroxy-L-lysine

4-cis-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

2-trans-nonenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3E)-dec-3-enoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

(3E)-undec-3-enoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-nonaprenyl diphosphate

3-octaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-hexaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

dioleoyl phosphatidate

1-palmitoyl-2-linoleoyl-phosphatidylcholine

1-linoleoyl-sn-glycero-3-phosphocholine

1-oleoyl-2-lyso-glycerone phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

α, α'-trehalose 6-α-mycolate

6-O-α-mycolyl-trehalose 6-phosphate

trehalose-cis-methoxy-mono-mycolate

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

trehalose-trans-methoxy-mono-mycolate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

trehalose-cis-keto-mono-mycolate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

trehalose-trans-keto-mono-mycolate

6-O-trans-keto-mycolyl-trehalose 6-phosphate

myo-inositol

1D-myo-inositol 3-monophosphate

phytate

D-myo-inositol (1,2,3,5,6) pentakisphosphate

hydroquinone

3,4-dihydroxymandelate

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxyphenylacetate

3,4-dihydroxyphenylglycol

protocatechuate

dopamine

biphenyl-2,3-diol

2,3-dihydroxybenzoate

ethylene glycol

(S)-propane-1,2-diol

(R)-propane-1,2-diol

3-dehydrosphinganine

propan-1-ol

phytol

butan-1-ol

ethanol

methanol

(2E,6E)-farnesal

fluoroacetaldehyde

3-(N-morpholino)propanal

methylglyoxal

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

4-nitrobenzaldehyde

benzaldehyde

phytenal

(S)-lactaldehyde

(R)-lactaldehyde

1-octanal

1-propanal

isobutanal

acetaldehyde

butan-1-al

formaldehyde

menadione

diacetyl

a coenzyme-A group

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

pyruvate

2-oxobutanoate

2-oxoglutarate

glyoxylate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

salicylate

4-aminobenzoate

3-hydroxybenzoate

benzoate

acetate

L-carnitine

fluoroacetate

(R)-pantoate

allantoate

orotate

D-tagaturonate

β-D-glucuronate

(S)-1-pyrroline-5-carboxylate

octanoate

palmitate

butanoate

stearate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

(3E,5Z)-tetradecadienoate

di-homo-γ-linolenate

phytenate

(2E,6E)-farnesoate

3-oxoadipate

formate

propanoate

(S)-lactate

(R)-lactate

4-hydroxybutanoate

(R)-glycerate

(S)-2-hydroxyglutarate

trans-aconitate

3-carboxy-cis,cis-muconate

cis-aconitate

D-threo-isocitrate

chorismate

D-glucarate

D-galactarate

succinate

fumarate

(S)-malate

biphenyl

4-hydroxybenzoate

4-tyrosol

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

urate

luteolin

tyramine

phenol

4-aminophenol

4-nitrophenol

4-nitrobenzyl alcohol

menadiol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

3-demethylubiquinol-9

3-demethylubiquinol-8

3-demethylubiquinol-7

3-demethylubiquinol-10

demethylmenaquinol-8

demethylmenaquinol-7

demethylmenaquinol-6

menaquinol-7

menaquinol-6

menaquinol-8

ubiquinol-9

ubiquinol-8

ubiquinol-6

ubiquinol-7

ubiquinol-10

indole

(indol-3-yl)acetaldehyde

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

amino-parathion

parathion

methyl parathion

vanillyl mandelate

3-methoxy-4-hydroxyphenylglycol

preQ₀

hydrogen cyanide

acrylonitrile

(indole-3-yl)acetonitrile

6-carboxy-5,6,7,8-tetrahydropterin

5,6,7,8-tetrahydromonapterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

molybdopterin adenine dinucleotide

molybdopterin

7,8-dihydromonapterin triphosphate

cyclic pyranopterin phosphate

7,8-dihydroneopterin 3'-phosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

riboflavin

FAD

FMN

FADH₂

reduced riboflavin

FMNH₂

6,7-dimethyl-8-(1-D-ribityl)lumazine

adenosylcobalamin

cob(I)alamin

sirohydrochlorin

precorrin-2

precorrin-1

nicotinate

nicotinamide

L-ascorbate

thiamine

pyridoxal 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxine

pyridoxamine

pyridoxal

4-pyridoxate

(R)-lipoate

coenzyme A

(R)-NADHX

(S)-NADHX

glycine betaine

D-glucono-1,5-lactone

trans-dienelactone

cis-dienelactone

oxalyl-CoA

formyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

(+)-7-epi-jasmonoyl-CoA

4-hydroxybenzoyl-CoA

methylacrylyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

(3S)-hydroxyadipyl-CoA

(E)-2-methylcrotonoyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-hydroxyisovaleryl-CoA

L-carnitinyl-CoA

crotonobetainyl-CoA

dihomo γ-linolenoyl-CoA

3-hydroxybenzoyl-CoA

isobutanoyl-CoA

γ-butyrobetainyl-CoA

2-methylacetoacetyl-CoA

2-methylbutanoyl-CoA

phenylacetyl-CoA

acetyl-CoA

3'-dephospho-CoA

malonyl-CoA

succinyl-CoA

(3S)-citryl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

oleoyl-CoA

3-oxoadipyl-CoA

3-oxo-myristoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxohexanoyl-CoA

3-oxodecanoyl-CoA

3-oxododecanoyl-CoA

3-oxooctanoyl-CoA

acetoacetyl-CoA

hexadecanedioyl-CoA

palmitoyl-CoA

stearoyl-CoA

octanoyl-CoA

lauroyl-CoA

decanoyl-CoA

hexanoyl-CoA

propanoyl-CoA

butanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(3Z)-dodec-3-enoyl-CoA

(S)-malyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

crotonyl-CoA

(R)-methylmalonyl-CoA

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

phenylacetate

(+)-7-epi-jasmonate

3,22-dioxochol-4-en-24-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

(S)-(+)-allantoin

acetamide

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

agmatine

spermidine

putrescine

cadaverine

4-aminobutanal

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

4-[(E)-2-(methylamino)ethenyl]phenol

4-[(Z)-2-aminoethenyl]phenol

trimethyl sulfonium

sulfate

sulfite

selenite

selenate

selenide

thiosulfate

OH^-

nitrite

nitrate

hydrogensulfite

hydrogencarbonate

molybdate

superoxide

phosphonate

phosphate

diphosphate

triphosphate

chloride

Fe³⁺

K⁺

H⁺

ammonium

Fe²⁺

Cu²⁺

Cd²⁺

Mg²⁺

Ni²⁺

S-(hydroxymethyl)glutathione

3-dimethylsulfoniopropionaldehyde

3-(methylsulfanyl)propanal

methionol

dimethyl sulfide

glutathione

(R)-S-lactoylglutathione

3-sulfopyruvate

L-cysteate

taurine

1-butanesulfonate

isethionate

3-(N-morpholino)propanesulfonate

5-(2-hydroxyethyl)-4-methylthiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

thiocyanate

S-sulfanylglutathione

2,4-dinitrophenyl-S-glutathione

1-chloro-2,4-dinitrobenzene

paraoxon

monodehydroascorbate radical

hydroxyl radical

2-octaprenylphenol

(S)-3-hydroxy-isobutanoate

5,10-methenyltetrahydrofolate mono-L-glutamate

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

(S)-ureidoglycine

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

N-acetyl-D-mannosamine 6-phosphate

α-D-glucosamine 6-phosphate

(2R)-2,3-dihydroxy-3-methylbutanoate

2-O-(α-D-mannosyl)-3-phospho-D-glycerate

2,3-diphospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

2-O-(α-D-mannosyl)-D-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 3-phosphate

hydrogen sulfide

oxygen

protoporphyrinogen IX

coproporphyrinogen I

uroporphyrinogen-I

uroporphyrinogen-III

protoporphyrin IX

siroheme

protoheme

N₂

adenosylcobinamide

cob(I)inamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

adenosylcobinamide-GDP

adenosyl-cobinamide phosphate

cob(II)yrinate a,c-diamide

adenosylcobyrate

adenosylcobalamin 5'-phosphate

ethylphosphate

DNA with lesion

(glutathion-S-yl)-4-hydroxy-2-nonenal

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate