an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

2-methyl-1,4-benzoquinone

methyl-1,4-benzoquinol

N,N-Dimethylformamide

dimethylamine

(L-threonylcarbamoyl)adenylate

2-keto-L-gulonate

phthalate

2,2'-disulfonyl azobenzene

3-[(4-amino-6-chloro-1,3,5-triazin-2-yl)amino]benzenesulfonate

(2Z,4E)-2-aminomuconate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

(2Z,4E)-2-amino-6-oxohexa-2,4-dienoate

2-dehydro-3-deoxy-D-gluconate

N,N-dimethylaniline

phosphite

N,N-dimethylaniline-N-oxide

nicotine-1'-N-oxide

(5S)-5-benzyl-hydantoin

(5R)-5-benzyl-hydantoin

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

(S)-mandelate

(R)-mandelate

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

pimelate

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

L-dehydro-ascorbate

(E)-2-benzylidenesuccinyl-CoA

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

picolinate

5-hydroxyindole thiazolidine carboxylate

ammonia

4-oxalocrotonate

1-pyrroline

4-oxoglutaramate

1-piperideine 6-carboxylate

(2E,4Z)-2-hydroxymuconate

(2Z,4E)-2-hydroxy-5-methyl-6-oxohexa-2,4-dienoate

2-hydroxy-6-oxohepta-2,4-dienoate

(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate

(2E,4Z)-2-hydroxy-6-oxohepta-2,4-dienoate

H₂

5'-phosphoguanylyl(3'→5')guanosine

(S)-2-amino-6-oxohexanoate

L-canavanine

DNA without lesion

coproporphyrinogen III

α-D-galacturonate 1-phosphate

L-xylo-hex-3-ulono-1,4-lactone

L-gulono-1,4-lactone

N²-succinylglutamate

5-oxo-L-proline

ethanolamine

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

4-methylmuconolactone

2-oleoylglycerol

cis-3-phenylcyclohexa-3,5-diene-1,2-diol

5-methylcytosine

N²-succinyl-L-ornithine

N²-succinyl-L-glutamate 5-semialdehyde

N-carbamoylputrescine

3-ureidopropanoate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

D-erythro-imidazole-glycerol-phosphate

2-dehydro-6-phospho-D-gluconate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

3''-adenylylstreptomycin

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

deethylsimazine

(2S)-2-isopropyl-3-oxosuccinate

N-ethylammeline

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

S-formylglutathione

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

selenophosphate

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

N-succinyl-L,L-2,6-diaminopimelate

prephenate

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

propionamide

(R)-4'-phosphopantothenoyl-L-cysteine

(indol-3-yl)acetamide

acrylamide

acrylate

4-guanidinobutyramide

2-amino-5-oxocyclohex-1-enecarboxyl-CoA

4-guanidinobutanoate

lipid A disaccharide (E. coli)

lipid IV_A

5-dehydro-4-deoxy-D-glucarate

creatinine

(2S,3S)-2,3-dihydroxy-5-oxohexanedioate

2-hydroxy-5-carboxymethylmuconate semialdehyde

N6'-acetylkanamycin-B

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(4Z)-2-oxohept-4-enedioate

nitrilotriacetate

5-carboxymethyl-2-hydroxymuconate

iminodiacetate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

formamide

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

poly(ribitol phosphate)

O-D-alanyl-poly(ribitol phosphate)

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

methylsalicylate

pimeloyl-CoA

salicyl alcohol

8-amino-7-oxononanoate

7,8-diaminopelargonate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

quinolinate

1,6-anhydro-N-acetyl-β-muramate

dithioerythritol

4,5-cis-dihydroxy-1,2-dithiacyclohexane

S-adenosyl 3-(methylsulfanyl)propylamine

4-aminobutanoate

O-acetyl-L-serine

(2-hydroxyphenyl)acetate

(S)-dihydroorotate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

S-ribosyl-L-homocysteine

autoinducer 2

N-methylhydantoin

2-iminoacetate

4-amino-4-deoxychorismate

pseudouridine

3-phosphonopyruvate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

selenodiglutathione

glutathioselenol

2-(α-hydroxyethyl)thiamine diphosphate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

dimethylsulfoniopropanoate

4-acetamidobutanal

4-acetamidobutanoate

mercuriphenyl acetate

D-glucurono-6,3-lactone

prop-2-ynal

propynoate

3,4-dihydroxyphenylacetaldehyde

histidinal

histidinol

5-hydroxyindole acetate

N⁵-carboxyaminoimidazole ribonucleotide

imidazole acetaldehyde

4-imidazoleacetate

xanthine

α-D-glucosamine 1-phosphate

carbamoyl phosphate

2-phenylethanol

2-methylbutanol

2-methylbutanal

3-methylbutanol

3-methylbutanal

isobutanol

indole-3-glycol

indole-3-glycol aldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

2,3-epoxy-2,3-dihydrobenzoyl-CoA

cis-3,4-dehydroadipyl-CoA semialdehyde

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

(4S)-4-hydroxy-2-oxoheptanedioate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

(2E,4Z)-4-hydroxy-6-oxohexa-2,4-dienoate

butanoyl phosphate

acetyl phosphate

(S)-4-hydroxy-2-oxopentanoate

4-amino-2-methyl-5-pyrimidinemethanol

α-D-glucopyranosyl-diphosphoundecaprenol

2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate

2,6-dioxo-6-phenylhexa-3-enoate

dethiobiotin

2-maleylacetate

2-phosphoglycolate

urea-1-carboxylate

3-demethylubiquinol-6

meso-tartrate

L-tartrate

2-hydroxy-3-oxosuccinate

anthranilate

(E)-3-(methoxycarbonyl)pent-2-enedioate

ADP-D-glycero-β-D-manno-heptose

ADP-L-glycero-β-D-manno-heptose

hydrogen selenide

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

adenosine 5'-phosphosulfate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

adenosine 5'-phosphoselenate

core oligosaccharide-lipid A (E. coli K-12 core type)

N-Formyl-L-kynurenine

prenyl diphosphate

pseudouridine 5'-phosphate

(+)-muconolactone

2,3-didehydroadipyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

cis,cis-muconate

3-hydroxypropanoate

preuroporphyrinogen

3-hydroxyanthranilate

2-amino-3-carboxymuconate-6-semialdehyde

(S)-ureidoglycolate

urea

thiamine phosphate

thiamine diphosphate

5-amino-6-(D-ribitylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

1-deoxy-L-glycero-tetrulose 4-phosphate

4'-phosphopantetheine

homogentisate

5-dehydro-D-gluconate

3-oxopropanoate

S-methyl-5'-thioadenosine

5-(methylsulfanyl)-α-D-ribose

2-dehydropantoate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

4-phosphooxy-L-threonine

3-phosphooxypyruvate

enol-phenylpyruvate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

2-dehydro-3-deoxy-D-galactonate

2-dehydro-3-deoxy-D-galactonate 6-phosphate

4-hydroxy-2-nonenal

O-ureido-L-homoserine

3-maleylpyruvate

4-maleyl-acetoacetate

4-fumaryl-acetoacetate

β-nicotinate D-ribonucleotide

β-D-ribosylnicotinate

3-dehydroshikimate

D-gluconate 6-phosphate

dihydrolipoamide

S-acetyldihydrolipoamide

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

phosphoenolpyruvate

(2S)-4-acetamido-2-aminobutanoate

ectoine

3-methylmuconolactone

muconolactone

4-methyl-3-oxoadipate-enol-lactone

4-methyl-3-oxoadipate

(S)-4-amino-5-oxopentanoate

hydroxypyruvate

tartronate semialdehyde

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

N²-succinyl-L-arginine

citrate

γ-L-glutamyl 5-phosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

3-deoxy-D-manno-octulosonate 8-phosphate

3-deoxy-α-D-manno-2-octulosonate

imidazole acetol-phosphate

L-histidinol phosphate

vanillin

N-acetyl-D-muramate 6-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

dihydroxyacetone

glycerone phosphate

N-(5-phosphoribosyl)-anthranilate

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

cis-3,4-dehydroadipyl-CoA

3,6-lactone of 3-hydroxyadinyl-CoA

trans-2,3-dehydroadipyl-coA

2,5-didehydro-D-gluconate

2-amino-2-deoxy-D-gluconate 6-phosphate

2-keto-D-gluconate

N-acetylglutamyl-phosphate

orotidine 5'-phosphate

acetoacetate

oxaloacetate

glycolate

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

carbon monoxide

streptomycin 3''-phosphate

4-imidazolone-5-propanoate

urocanate

N-cyclohexylformamide

cyclohexyl-isocyanide

(R)-pantothenate

(R)-4'-phosphopantothenate

N-ethylammelide

2-oxoadipate

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

shikimate

shikimate 3-phosphate

5-aminolevulinate

porphobilinogen

D-glycero-β-D-manno-heptose 1-phosphate

itaconate

γ-butyrobetaine

succinate semialdehyde

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

L-selenocystathionine

2-aminoacetaldehyde

(2E)-2-hydroxypenta-2,4-dienoate

CO₂

(3E)-2-oxopent-3-enoate

2-oxopent-4-enoate

hydrogen peroxide

H₂O

3-propylcatechol

2-hydroxy-6-oxo-nona-2,4-dienoate

canavaninosuccinate

L-arginino-succinate

nicotinate adenine dinucleotide

5-phospho-β-D-ribosylamine

isopentenyl diphosphate

2-C-methyl-D-erythritol 4-phosphate

lipid X

glutathione disulfide

3'-phosphoadenylyl-sulfate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

carbonic acid

N-acetyl-L-glutamate 5-semialdehyde

oxalosuccinate

2,5-dioxopentanoate

2-methyl-4-chlorophenol

fluoroacetate

3-chloro-cis,cis-muconate

2-chloro-5-methyl-dienelactone

3,5-dichloro-2-methyl-muconate

3,5-dichloro-2-methyl-muconolactone

2-chloro-5-methyl-maleylacetate

3-chloro-2-methyl-dienelactone

3-chloro-2-methyl-maleylacetate

2-chloroacetate

2,4-dichlorophenol

3,5-dichlorocatechol

3-chlorobenzoate

2,4-dichlorotoluene

(1R,2S)-4,6-dichloro-3-methylcyclohexa-3,5-diene-1,2-diol

4,6-dichloro-3-methylcatechol

5-chloro-3-methylcatechol

acetamide

isopenicillin N

penicillin K

(S)-(+)-allantoin

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

nicotinamide

ethene

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

phenylacetate

(2E,6E)-farnesyl diphosphate

pristanate

all-trans-retinyl palmitate

D-glucono-1,5-lactone

L-glucono-1,5-lactone

L-galactono-1,4-lactone

trans-dienelactone

cis-dienelactone

(2E,5Z)-tetradecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

L-carnitinyl-CoA

crotonobetainyl-CoA

itaconyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

(3E)-undec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

anthraniloyl-CoA

isobutanoyl-CoA

malonyl-CoA

2-methylacetoacetyl-CoA

benzoyl-CoA

3-methylcrotonyl-CoA

3-methylglutaconyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-hydroxyisovaleryl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

trans-feruloyl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

methylacrylyl-CoA

3-hydroxypropanoyl-CoA

acryloyl-CoA

3'-dephospho-CoA

succinyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(E)-glutaconyl-CoA

phenylacetyl-CoA

(3S)-citryl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

acetyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

4-hydroxybenzoyl-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

linoleoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

γ-butyrobetainyl-CoA

α-linolenoyl-CoA

isovaleryl-CoA

2-methylbutanoyl-CoA

(R)-methylmalonyl-CoA

(S)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E)-octadec-2-enoyl-CoA

trans-hex-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-dodec-2-enoyl-CoA

phytanoyl-CoA

(3S)-citramalyl-CoA

(3Z)-dodec-3-enoyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxypentanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

cerotoyl-CoA

2-carboxy-cerotoyl-CoA

(Z)-15-tetracosenoyl-CoA

butanoyl-CoA

propanoyl-CoA

hexanoyl-CoA

lauroyl-CoA

decanoyl-CoA

octanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

2-hydroxyphytanoyl-CoA

pristanoyl-CoA

hexadecanedioyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxoadipyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

3-oxooctanoyl-CoA

3-oxohexanoyl-CoA

3-oxodecanoyl-CoA

3-oxododecanoyl-CoA

3-oxooctadecanoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

FMNH₂

FMN

FAD

FADH₂

(S)-NADHX

(R)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

caldariellaquinol

ubiquinol-10

ubiquinol-7

ubiquinol-6

ubiquinol-8

ubiquinol-9

3-demethylubiquinol-10

3-demethylubiquinol-7

3-demethylubiquinol-8

3-demethylubiquinol-9

caldariellaquinone

Reactive Blue 5

glycine betaine

coenzyme A

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

nicotinate

riboflavin

L-ascorbate

all-trans-retinol

pyridoxal

pyridoxal 5'-phosphate

pyridoxamine

pyridoxamine 5'-phosphate

pyridoxine

pyridoxine 5'-phosphate

L-carnitine

menadione

(S)-1-pyrroline-5-carboxylate

guanine

adenine

2'-deoxyadenosine

2'-deoxyinosine

2'-deoxyguanosine

guanosine

inosine

xanthosine

adenosine

hypoxanthine

dAMP

dGMP

dITP

dGTP

dATP

dIDP

dGDP

dADP

GDP

IDP

ADP

GMP

IMP

XMP

AMP

GTP

ITP

ATP

UDP

CDP

cytosine

cytidine 2',3'-cyclic monophosphate

cytidine-3'-monophosphate

uridine 2'3'-cyclic monophosphate

uridine 3'-monophosphate

5,6-dihydrouracil

5,6-dihydrothymine

dCMP

dUMP

dTMP

CTP

UTP

dCTP

dUTP

dUDP

dCDP

orotate

uracil

dTTP

dTDP

cytidine

uridine

2'-deoxycytidine

2'-deoxyuridine

thymidine

thymine

CMP

UMP

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-α-D-galacturonate

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-glucuronate

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-glucose

UDP-α-D-galactose

UDP-N-acetyl-α-D-mannosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

dTDP-α-D-glucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

5-fluorouracil

isoguanine

preQ₁

cob(I)alamin

adenosylcobalamin

precorrin-1

precorrin-2

cobalt-precorrin-3

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-5A

sirohydrochlorin

cobyrinate

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydromonapterin

7,8-dihydroneopterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

preQ₀

(indole-3-yl)acetonitrile

acrylonitrile

hydrogen cyanide

2-hydroxylaminobenzoate

3-hexaprenyl-4-hydroxybenzoate

4-hydroxybenzoate

salicylaldehyde

biphenyl

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

benzene

4-tyrosol

2-nitrobenzoate

urate

2-propylphenol

ferulate

vanillate

protocatechuate

salicylate

2,3-dihydroxybenzoate

4-aminobenzoate

benzoate

3-hydroxybenzoate

vanillyl mandelate

3-methoxy-4-hydroxyphenylglycol

phenylacetaldehyde

(4-hydroxyphenyl)acetaldehyde

benzaldehyde

(indol-3-yl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

menadiol

hydroquinone

4-methylphenol

3-sulfocatechol

4-methylcatechol

3-methylcatechol

catechol

3,4-dihydroxyphenylacetate

3,4-dihydroxymandelate

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

biphenyl-2,3-diol

D-idonate

5-dehydro-L-gluconate

L-gluconate

acetate

D-mannonate

(R)-pantoate

gentisate

D-gluconate

D-tagaturonate

aldehydo-D-galacturonate

aldehydo-D-glucuronate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

4-(methylsulfanyl)-2-oxobutanoate

2-oxobutanoate

glyoxylate

pyruvate

2-oxoglutarate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

L-α-amino-ε-keto-pimelate

L-kynurenine

L-2-aminoadipate

L-tryptophan

L-tyrosine

L-phenylalanine

L-histidine

D-aspartate

D-serine

D-glutamate

D-proline

D-alanine

L-saccharopine

L-aspartyl-4-phosphate

S-sulfanyl-L-cysteine

L-selenomethionine

seleno-L-homocysteine

sarcosine

N⁵-formyl-N⁵-hydroxy-L-ornithine

formyl-L-isoglutamine

N-formyl-L-glutamate

N-formimino-L-glutamate

N-acetyl-L-aspartate

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-acetyl-L-methionine

N-acetyl-L-glutamate

N⁵-hydroxy-L-ornithine

N-carbamoyl-L-aspartate

3-hydroxy-L-kynurenine

O-acetyl-L-homoserine

3-phospho-L-serine

L-citrulline

L-methionine

L-arginine

L-isoleucine

L-leucine

L-serine

glycine

L-proline

L-alanine

L-valine

L-threonine

L-lysine

L-glutamate

L-glutamine

L-asparagine

L-aspartate

L-cysteine

L-4-hydroxyglutamate semialdehyde

L-canaline

hypoglycin A

L-glutamate-5-semialdehyde

O-succinyl-L-homoserine

1-aminocyclopropane-1-carboxylate

3-sulfino-L-alanine

S-sulfo-L-cysteine

L-ornithine

L-cystine

L-homoserine

O-phospho-L-homoserine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-homocysteine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-selenocysteine

L-allo-threonine

L-isoglutamine

N^ω-hydroxy-L-arginine

L-2,4-diaminobutanoate

L,L-diaminopimelate

L-cystathionine

N-carbamoylsarcosine

β-alanine

(R)-3-amino-2-methylpropanoate

(S)-3-amino-2-methylpropanoate

(3E)-2-oxohex-3-enedioate

3-methyl-cis,cis-muconate

chorismate

fumarate

succinate

(S)-malate

D-galactarate

D-glucarate

3-(carbamoylamino)-2-methylpropanoate

3-carboxy-cis,cis-muconate

(2S,3S)-2-methylcitrate

trans-aconitate

cis-2-methylaconitate

(2R,3S)-2-methylisocitrate

cis-aconitate

D-threo-isocitrate

(R)-3-hydroxybutanoate

(R)-lactate

(S)-lactate

(R)-glycerate

propanoate

formate

butanoate

octanoate

decanoate

(2E,6E)-farnesoate

3-oxoadipate

leukotriene-D4

leukotriene-E4

1-palmitoyl-2-linoleoyl-phosphatidylcholine

1-linoleoyl-sn-glycero-3-phosphocholine

(15Z)-tetracosenoate

oleate

(3E,5Z)-tetradecadienoate

apo-4'-lycopenoate

γ-linolenate

linoleate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

α-linolenate

phytenate

palmitate

a coenzyme-A group

methylglyoxal

diacetyl

glycolaldehyde

(2E,6E)-farnesal

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

α-D-galactopyranose

β-D-galactopyranose

L-sorbosone

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

1-octanal

isobutanal

1-propanal

butan-1-al

formaldehyde

acetaldehyde

(S)-lactaldehyde

phytenal

propan-1-ol

butan-1-ol

methanol

ethanol

phytol

glycerol

D-sorbitol

L-iditol

3,5-cyclohexadiene-1,2-diol-1-carboxylate

myo-inositol

1D-myo-inositol 2-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 4-monophosphate

1D-myo-inositol 3-monophosphate

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

apo-4'-lycopenal

geranyl diphosphate

3-nonaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-nonaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

galactosyl-glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

α-Kdo-(2→6)-lipid IV_A

α-Kdo-(2->4)-α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

α-Kdo-(2->8)-[α-Kdo-(2->4)]-α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

α-Kdo-(2->8)-α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

heptosyl-Kdo₂-lipid A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

heptosyl-Kdo₂-lipid IV_A

galactosyl-(glucosyl)₃-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₂-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₂-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₂-Kdo₂-lipid A

(heptosyl)₂-Kdo₂-lipid A

1-oleoyl-2-lyso-glycerone phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

dioleoyl phosphatidate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

1-oleoyl-2-palmitoyl-phosphatidylglycerol

streptomycin

kanamycin B

(S)-nicotine

ferric-enterobactin complex

ferrichrome

1-(β-D ribofuranosyl)nicotinamide

keto-D-fructose

keto-L-sorbose

L-sorbosone 1,4-lactone

L-sorbosone 2,6-lactone

L-glucose

β-D-fructofuranose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (E. faecium, tetrapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-ribulose-1,5-bisphosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

ADP-α-D-glucose

GDP-α-D-mannose

GDP-4-dehydro-α-D-rhamnose

GDP-β-L-fucose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

4-phospho-D-erythronate

D-sedoheptulose 1,7-bisphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

β-D-galactose 6-phosphate

α-D-galactose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

maltotriose

maltotetraose

maltohexaose

maltopentaose

sucrose

α,α-trehalose

D-altronate

aldehydo-L-galactonate

L-gulonate

D-galactonate

L-idonate

8-oxo-GTP

8-oxo-dGTP

pppGpp

ppGpp

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

adenosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

guanosine 2',3'-cyclic monophosphate

guanosine 3'-monophosphate

5'-deoxyadenosine

adenylo-succinate

cyclic-AMP

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

5-hydroxy-CTP

2-hydroxy-dATP

reduced β-nicotinamide D-ribonucleotide

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cyclic di-3',5'-guanylate

5-fluorocytosine

hypoglycin B

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-cysteinylglycine

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

2-iminosuccinate

2-iminobutanoate

2-iminopropanoate

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

carboxyphosphinopyruvate

3-(hydroxyphosphinoyl)pyruvate

phosphonoacetaldehyde

1-carboxyvinyl carboxyphosphonate

(2-aminoethyl)phosphonate

Mg-protoporphyrin

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

3,8-divinyl protochlorophyllide a

magnesium-protoporphyrin IX 13-monomethyl ester

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

chlorophyllide a

protochlorophyllide a

cobalt-factor III

cobalt-sirohydrochlorin

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

protoheme

N₂

nitrous oxide

protoporphyrinogen IX

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrin IX

uroporphyrinogen-III

(Z,Z)-biliverdin-IX α

Hg⁰

oxygen

hydrogen sulfide

sn-glycerol 3-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

(2R)-2,3-dihydroxy-3-methylbutanoate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

5,10-methenyltetrahydrofolate mono-L-glutamate

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

monodehydroascorbate radical

hydroxyl radical

superoxide

nitric oxide

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

S-(hydroxymethyl)glutathione

3-dimethylsulfoniopropionaldehyde

methionol

3-(methylsulfanyl)propanal

dimethyl sulfide

methanethiol

glutathione

thiocyanate

S-sulfanylglutathione

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

L-cysteate

3-sulfopyruvate

taurine

sulfoacetaldehyde

(R)-S-lactoylglutathione

Fe³⁺

K⁺

H⁺

ammonium

Zn²⁺

Cd²⁺

Mg²⁺

Hg²⁺

Fe²⁺

Mn²⁺

Ca²⁺

Cu²⁺

Co²⁺

molybdate

OH^-

hydrogensulfite

selenide

tetrathionate

selenite

nitrate

nitrite

selenate

thiosulfate

hydrogencarbonate

sulfite

sulfate

phosphonate

phosphate

triphosphate

diphosphate

fluoride

chloride

trimethyl sulfonium

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

agmatine

4-aminobutanal

N¹-acetylspermidine

N¹-acetylspermine

N-acetylputrescine

cadaverine

putrescine

spermidine

spermine

sn-glycero-3-phosphoethanolamine

glycerophosphoserine

glycerophosphoglycerol