an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2-carboxy-L-threo-pentonate

cyclic- 3,4-O-oxalyl-L-threonate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-hydroxyindole thiazolidine carboxylate

bisorganyltrisulfane

cyclic-2,3-O-oxalyl-L-threonate

2-carboxy-L-xylonolactone

pyruvic oxime

4-oxoglutaramate

1-piperideine 6-carboxylate

octadecanal

dehydroascorbate (bicyclic form)

L-dehydro-ascorbate

2-hydroxy-6-oxocyclohexane-1-carbonyl-CoA

cyclohexane-1-carbonyl-CoA

cyclohexane-1-carboxylate

3-oxopimeloyl-CoA

3-hydroxypimeloyl-CoA

6-oxocyclohex-1-ene-1-carbonyl-CoA

6-hydroxycyclohex-1-ene-1-carbonyl-CoA

cyclohex-1,5-diene-1-carbonyl-CoA

crotonate

selenodiglutathione

glutathioselenol

γ-butyrobetaine

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

2-keto-D-gluconate

hydroxypyruvate

2-amino-3-carboxymuconate-6-semialdehyde

4-amino-2-methyl-5-pyrimidinemethanol

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

protoanemonin

2-maleylacetate

N⁵-carboxyaminoimidazole ribonucleotide

dialurate

acetoacetate

methyloxaloacetate

(S)-3-methyl-2-oxopentanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(enterobacterial common antigen)-undecaprenyl diphosphate

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

N-acetyl-β-D-mannosaminuronyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol

preuroporphyrinogen

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

3-mercaptopyruvate

salicyl alcohol

3α,7α-dihydroxy-24-oxo-5β-cholestanoyl CoA

3-oxo-3-phenylpropanoyl-CoA

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

isochorismate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

1,4-dihydroxy-2-naphthoyl-CoA

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-succinylbenzoate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

4-methylsalicylate

5-methylsalicylate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

L-histidinol phosphate

histidinal

histidinol

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

α-ribazole

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

(S)-4-amino-5-oxopentanoate

ethanolamine

N-(5-phosphoribosyl)-anthranilate

N,N-dimethyl-1,4-phenylenediamine

4-acetamidobutanal

4-acetamidobutanoate

2-aminomalonate semialdehyde

N-acetyl-D-muramate 6-phosphate

N-ethylmaleimide

N-ethylsuccinimide

2-deoxy-D-glucose 6-phosphate

2-deoxy-D-glucose

N²-succinylglutamate

N²-succinyl-L-arginine

N²-succinyl-L-ornithine

N²-succinyl-L-glutamate 5-semialdehyde

pyrazine-2-carboxylate

oxalosuccinate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

1,6-anhydro-N-acetyl-β-muramate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

5-enolpyruvoyl-shikimate 3-phosphate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

hydroxylamine

dethiobiotin

pimeloyl-CoA

(S)-2-amino-6-oxohexanoate

8-amino-7-oxononanoate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

7,8-diaminopelargonate

urocanate

formamide

4-imidazolone-5-propanoate

6-phospho D-glucono-1,5-lactone

2-O-(6-phospho-α-D-mannosyl)-D-glycerate

itaconate

5-oxo-L-proline

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

nicotinate adenine dinucleotide

(R)-1-amino-2-propanol O-2-phosphate

vanillin

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

N-(2,3-dihydroxybenzoyl)-L-serine dimer

N-(2,3-dihydroxybenzoyl)-L-serine

N-(2,3-dihydroxybenzoyl)-L-serine trimer

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

β-D-ribosylnicotinate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

5-amino-6-(D-ribitylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

5-aminolevulinate

porphobilinogen

2-aminoacetaldehyde

3-hydroxypropanoate

2-methyl-trans-aconitate

N-Formyl-L-kynurenine

γ-L-glutamyl 5-phosphate

5-dehydro-D-gluconate

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

2-iminoacetate

L-canavanine

N-acetylglutamyl-phosphate

dihydroxyacetone

1,4-dihydroxy-2-naphthoate

lipid X

lipid A disaccharide (E. coli)

(S)-2,3,4,5-tetrahydrodipicolinate

5-deoxy-α-ribose 1-phosphate

2-dehydropantoate

(R)-pantothenate

carbonic acid

S-methyl-5'-thioadenosine

S-adenosyl 3-(methylsulfanyl)propylamine

citrate

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

β-nicotinate D-ribonucleotide

quinolinate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

(2S)-2-isopropylmalate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

citraconate

(2R,3S)-3-methylmalate

4-phosphooxy-L-threonine

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

(lipoyl)adenylate

xanthine

(S)-dihydroorotate

2-dehydro-3-deoxy-D-gluconate

α-D-ribose-1-methylphosphonate 5-phosphate

5-phospho-α-D-ribose 1,2-cyclic phosphate

α-D-ribose 1,5-bisphosphate

carbon monoxide

DNA without lesion

thiamine phosphate

(indol-3-yl)pyruvate

anthranilate

enol-phenylpyruvate

prephenate

5-(methylsulfanyl)-ribulose 1-phosphate

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

5-(methylsulfanyl)-α-D-ribose

S-methyl-5-thio-α-D-ribose 1-phosphate

S-ribosyl-L-homocysteine

autoinducer 2

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2-C-methyl-D-erythritol 4-phosphate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

3'-phosphoadenylyl-sulfate

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

3-deoxy-D-glycero-2,5-hexodiulosonate

isopentenyl diphosphate

prenyl diphosphate

3-phosphooxypyruvate

carbamoyl phosphate

4-guanidinobutyramide

coproporphyrinogen III

glutathionylspermidine

H₂

L-selenocystathionine

2-keto-L-gulonate

2,5-didehydro-D-gluconate

1-deoxy-L-glycero-tetrulose 4-phosphate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

L-tartrate

urea

1-pyrroline

acetyl phosphate

propanoyl phosphate

5-dehydro-4-deoxy-D-glucarate

tartronate semialdehyde

L-arginino-succinate

O-ureido-L-homoserine

canavaninosuccinate

α-D-glucosamine 1-phosphate

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

3-deoxy-D-manno-octulosonate 8-phosphate

3-deoxy-α-D-manno-2-octulosonate

hydrogen peroxide

3-dehydroshikimate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

malonate

N-succinyl-L,L-2,6-diaminopimelate

N-succinyl-2-amino-6-ketopimelate

N-acetyl-L-glutamate 5-semialdehyde

4-amino-4-deoxychorismate

ammonia

2-phosphoglycolate

glycolate

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

shikimate

shikimate 3-phosphate

oxaloacetate

phosphoenolpyruvate

D-gluconate 6-phosphate

4-aminobutanoate

succinate semialdehyde

3-oxopropanoate

adenosine 3',5'-bisphosphate

glutathione disulfide

core oligosaccharide-lipid A (E. coli K-12 core type)

3-methyl-2-oxobutanoate

3-keto-L-gulonate

2,3-dioxo-L-gulonate

3-keto-L-gulonate 6-phosphate

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

indole-3-glycol

indole-3-glycol aldehyde

isobutanol

3-methylbutanol

3-methylbutanal

2-methylbutanol

2-methylbutanal

2-phenylethanol

selenophosphate

hydrogen selenide

4-hydroxy-2-nonenal

O-acetyl-L-serine

glycerone phosphate

aminoacetone

ADP-D-glycero-β-D-manno-heptose

ADP-L-glycero-β-D-manno-heptose

lipid IV_A

(R)-4'-phosphopantothenoyl-L-cysteine

4'-phosphopantetheine

CO₂

(R)-4-phosphopantoate

(R)-4'-phosphopantothenate

H₂O

orotidine 5'-phosphate

2-iminosuccinate

2-iminopropanoate

2-iminobutanoate

4-methylphenol

L-homocysteine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

L-cysteinylglycine

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

ethylphosphate

cobalt-factor III

cobalt-sirohydrochlorin

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-4

cobalt-precorrin-5A

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

cobalt-precorrin-5B

cobalt-precorrin-6B

cobalt-precorrin-6A

cobalt-precorrin-2

cobalt-precorrin-3

adenosylcobyrate

adenosyl-cobinamide phosphate

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

cob(I)alamin

adenosylcobalamin

hemin

protoheme

N₂

nitrous oxide

hydrogen cyanide

protoporphyrin IX

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrinogen IX

uroporphyrinogen-III

siroheme

oxygen

hydrogen sulfide

S⁰

sn-glycerol 3-phosphate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

4-dimethylaminophenylazobenzene

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

N-acetyl-D-mannosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

1-oleoyl-2-lyso-glycerone phosphate

(R)-citramalate

dTDP-4-amino-4,6-dideoxy-α-D-galactose

5,10-methenyltetrahydrofolate mono-L-glutamate

3-(all-trans-octaprenyl)benzene-1,2-diol

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

(S)-2-hydroxyglutarate

hydroxyl radical

monodehydroascorbate radical

superoxide

nitric oxide

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

N-acetyl-β-neuraminate

S-(hydroxymethyl)glutathione

dimethyl sulfide

S-methyl-L-methionine

methionol

3-(methylsulfanyl)propanal

3-sulfino-L-alanine

methanethiol

thiocyanate

glutathione

S-sulfanylglutathione

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

taurine

methanesulfonate

1-butanesulfonate

isethionate

3-(N-morpholino)propanesulfonate

(R)-S-lactoylglutathione

Fe³⁺

K⁺

H⁺

ammonium

Co²⁺

Fe²⁺

Mo²⁺

Cu²⁺

Mg²⁺

Zn²⁺

Cd²⁺

Hg²⁺

Pb²⁺

Ni²⁺

trimethyl sulfonium

OH^-

hydrogensulfite

selenite

molybdate

nitrate

selenide

selenate

hydrogencarbonate

nitrite

thiosulfate

sulfite

sulfate

phosphate

triphosphate

diphosphate

chloride

aniline

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

agmatine

4-aminobutanal

spermidine

putrescine

betaine aldehyde hydrate

glycine betaine

choline

betaine aldehyde

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

sn-glycero-3-phosphocholine

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

glycerophosphoserine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

fluoroacetaldehyde

fluoroacetate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

3-chloro-cis,cis-muconate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

4-chlorosalicylate

5-chlorosalicylate

4-chlorocatechol

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

pyrazinamide

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

nicotinamide

ethene

heptadecane

methane

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

(+)-7-epi-jasmonate

glutaryl-CoA

(E)-glutaconyl-CoA

2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3α,7α,12α-trihydroxy-24-oxo-5-β-cholestanoyl CoA

choloyl-CoA

chenodeoxycholoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

benzoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

4-hydroxybenzoyl-CoA

itaconyl-CoA

dihomo γ-linolenoyl-CoA

(+)-7-epi-jasmonoyl-CoA

acryloyl-CoA

3-hydroxypropanoyl-CoA

γ-butyrobetainyl-CoA

L-carnitinyl-CoA

crotonobetainyl-CoA

isovaleryl-CoA

3-methylcrotonyl-CoA

succinyl-CoA

2-methylacetoacetyl-CoA

malonyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

acetyl-CoA

3'-dephospho-CoA

crotonyl-CoA

(S)-malyl-CoA

(3Z)-dodec-3-enoyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

butanoyl-CoA

propanoyl-CoA

octanoyl-CoA

lauroyl-CoA

decanoyl-CoA

hexanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

hexadecanedioyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

3-oxohexanoyl-CoA

3-oxodecanoyl-CoA

3-oxododecanoyl-CoA

3-oxooctanoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

D-glucono-1,5-lactone

FMNH₂

FMN

FAD

FADH₂

(S)-NADHX

(R)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

ubiquinol-8

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-8

molybdopterin

(R)-lipoate

coenzyme A

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

L-ascorbate

nicotinate

thiamine

riboflavin

pyridoxine

pyridoxal

pyridoxamine

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

L-carnitine

(S)-1-pyrroline-5-carboxylate

precorrin-2

precorrin-1

sirohydrochlorin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

molybdopterin adenine dinucleotide

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin 2',3'-cyclic phosphate

cyclic pyranopterin phosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydromonapterin triphosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydropteroate

5,6,7,8-tetrahydromonapterin

guanine

adenine

2'-deoxyadenosine

2'-deoxyguanosine

2'-deoxyinosine

inosine

xanthosine

guanosine

adenosine

hypoxanthine

dGMP

dAMP

dITP

dATP

dGTP

dIDP

dADP

dGDP

IDP

GDP

ADP

XMP

IMP

GMP

AMP

ITP

GTP

ATP

uracil

dTTP

dCTP

dTDP

dCMP

dUDP

dCDP

CDP

UTP

dTMP

CTP

uridine 2'3'-cyclic monophosphate

uridine 3'-monophosphate

cytidine 2',3'-cyclic monophosphate

cytidine-3'-monophosphate

UDP

dUTP

dUMP

orotate

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-galactose

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-α-D-glucose

dTDP-4-acetamido-4,6-dideoxy-α-D-galactose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

cytidine

uridine

2'-deoxycytidine

2'-deoxyuridine

thymidine

thymine

UMP

CMP

isoguanine

preQ₁

preQ₀

salicylaldehyde

urate

4-hydroxybenzoate

4-tyrosol

3-methoxy-4-hydroxyphenylglycol

benzaldehyde

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

hydroquinone

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

phenol

catechol

4-methylcatechol

2,3-dihydroxybenzoate

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

enterobactin

salicylate

benzoate

4-aminobenzoate

chorismate

fumarate

succinate

L-aspartate

(S)-malate

D-glucarate

D-galactarate

(2S,3S)-2-methylcitrate

cis-aconitate

(2R,3S)-2-methylisocitrate

cis-2-methylaconitate

D-threo-isocitrate

(R)-lactate

(S)-lactate

sophorosyloxydocosanoate

13-sophorosyloxydocosanoate 6',6''-diacetate

13-[O(2')-β-D-glucopyranosyl-β-D-glucopyranosyloxy]docosanoate O(6'')-acetate

propanoate

formate

acetate

pyruvate

butanoate

octanoate

3-oxoadipate

oleate

(3E,5Z)-tetradecadienoate

apo-4'-lycopenoate

di-homo-γ-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

phytenate

palmitate

stearate

(R)-pantoate

D-mannonate

D-gluconate

D-tagaturonate

aldehydo-D-galacturonate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

4-(methylsulfanyl)-2-oxobutanoate

glyoxylate

2-oxobutanoate

2-oxoglutarate

L-α-amino-ε-keto-pimelate

D-serine

L-serine

β-alanine

L-leucine

L-proline

L-glutamine

L-alanine

glycine

D-glutamate

L-glutamate

L-histidine

L-lysine

L-arginine

L-tyrosine

L-asparagine

L-threonine

L-cysteine

L-phenylalanine

L-tryptophan

D-cysteine

D-alanine

L-selenomethionine

seleno-L-homocysteine

L-aspartyl-4-phosphate

L-2-amino-3-oxobutanoate

L-threonine 3-O-phosphate

3-phospho-L-serine

N-methyl-L-tryptophan

(2S, 3S)-3-methylaspartate

formyl-L-isoglutamine

N-formyl-L-glutamate

N-formimino-L-glutamate

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-acetyl-L-glutamate

N-acetyl-L-methionine

N-carbamoyl-L-aspartate

O-acetyl-L-homoserine

L-citrulline

L-isoleucine

L-valine

L-4-hydroxyglutamate semialdehyde

1-aminocyclopropane-1-carboxylate

S-sulfo-L-cysteine

L-glutamate-5-semialdehyde

O-phospho-L-homoserine

L-canaline

L-homoserine

O-succinyl-L-homoserine

L-ornithine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-selenocysteine

L-methionine

L-isoglutamine

L,L-diaminopimelate

L-cystathionine

a coenzyme-A group

a methyl group

methylglyoxal

diacetyl

3-(N-morpholino)propanal

glycolaldehyde

1-octanal

formaldehyde

butan-1-al

acetaldehyde

1-propanal

isobutanal

(S)-lactaldehyde

phytenal

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

α-D-galactopyranose

β-D-galactopyranose

α-D-xylopyranose

α-L-rhamnopyranose

β-L-rhamnopyranose

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

butan-1-ol

methanol

ethanol

propan-1-ol

phytol

glycerol

D-sorbitol 6-phosphate

D-mannitol 1-phosphate

(S)-propane-1,2-diol

myo-inositol

1D-myo-inositol 3-monophosphate

1D-myo-inositol 4-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 2-monophosphate

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

6-O-α-mycolyl-trehalose 6-phosphate

α, α'-trehalose 6-α-mycolate

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

trehalose-cis-methoxy-mono-mycolate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

trehalose-trans-methoxy-mono-mycolate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

trehalose-cis-keto-mono-mycolate

6-O-trans-keto-mycolyl-trehalose 6-phosphate

trehalose-trans-keto-mono-mycolate

1-palmitoyl-sn-glycero-3-phosphocholine

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-oleoyl-sn-glycerol 3-phosphate

1,2-dipalmitoyl-sn-glycero-3-phosphocholine

dioleoyl phosphatidate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

1-18:1-2-18:1-phosphatidylethanolamine

apo-4'-lycopenal

geranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

(2E,6E)-farnesyl diphosphate

trans,octacis-decaprenyl phosphate

3-octaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

galactosyl-glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₃-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₂-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₂-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₂-Kdo₂-lipid A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

heptosyl-Kdo₂-lipid A

(heptosyl)₂-Kdo₂-lipid A

α-Kdo-(2→6)-lipid IV_A

vanillylamine

ferric-enterobactin complex

ferric-[N-(2,3-dihydroxybenzoyl)-L-serine trimer] complex

iron(III) dicitrate

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

maltotriose

maltotetraose

maltoheptaose

maltopentaose

maltohexaose

sucrose

α,α-trehalose

α-lactose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-mannosamine

N-acetyl-β-D-glucosamine

β-L-fucopyranose

α-L-fucopyranose

keto-D-fructose

β-D-fructofuranose

L-fuculose

keto-L-rhamnulose

D-xylulose

L-ribulose

D-ribulose

1-O-acetyl-α-maltose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (mycobacteria)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

sucrose 6^F-phosphate

N,N'-diacetylchitobiose 6'-phosphate

N-monoacetylchitobiose 6'-phosphate

α,α-trehalose 6-phosphate

β-D-cellobiose 6'-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

ADP-α-D-glucose

GDP-α-D-glucose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

4-phospho-D-erythronate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-tagatofuranose 1,6-bisphosphate

arbutin-6-phosphate

salicin 6-phosphate

D-allulose 6-phosphate

D-tagatofuranose 6-phosphate

L-ascorbate 6-phosphate

aldehydo-D-allose 6-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

L-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

aldehydo-D-arabinose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-rhamnulose 1-phosphate

L-fuculose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

methyl β-D-glucoside 6-phosphate

L-idonate

D-altronate

8-oxo-GTP

8-oxo-dGTP

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

adenylo-succinate

5'-deoxyadenosine

cyclic-AMP

guanosine 2',3'-cyclic monophosphate

guanosine 3'-monophosphate

adenosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

ppGpp

pppGpp

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

5-hydroxy-CTP

2-hydroxy-dATP

reduced β-nicotinamide D-ribonucleotide

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cyclic di-3',5'-guanylate