an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

L-dehydro-ascorbate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-hydroxyindole thiazolidine carboxylate

aminoacetone

1-pyrroline

4-oxoglutaramate

α-D-galacturonate 1-phosphate

L-xylo-hex-3-ulono-1,4-lactone

L-gulono-1,4-lactone

octadecanal

4-deoxy-4-formamido-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

N²-succinyl-L-ornithine

N²-succinyl-L-arginine

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(R)-4'-phosphopantothenoyl-L-cysteine

2-iminoacetate

7-carboxy-7-deazaguanine

selenodiglutathione

glutathioselenol

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

formamide

(S)-5-amino-3-oxohexanoate

(3S,5S)-3,5-diaminohexanoate

(R)-4'-phosphopantothenate

autoinducer 2

2-(α-hydroxyethyl)thiamine diphosphate

α-D-glucosamine 1-phosphate

1,4-dihydroxy-2-naphthoyl-CoA

3'-ketosucrose

ammonia

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

N-carbamoylputrescine

1,4-dihydroxy-2-naphthoate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

3-dehydroquinate

3-deoxy-D-manno-octulosonate 8-phosphate

3-deoxy-α-D-manno-2-octulosonate

shikimate

3-dehydroshikimate

glutathionylspermidine

2-keto-L-gulonate

(E)-3-(methoxycarbonyl)pent-2-enedioate

chloramphenicol

(S)-5-hydroxyisourate

anthranilate

2-oleoylglycerol

2-dehydro-3-deoxy-D-gluconate

(S)-2-acetolactate

2,5-didehydro-D-gluconate

5-dehydro-2-deoxy-D-gluconate

5-dehydro-2-deoxy-D-gluconate 6-phosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

meso-tartrate

2-hydroxy-3-oxosuccinate

L-tartrate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

thiamine diphosphate

isopentenyl diphosphate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-succinylbenzoate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

itaconate

3-deoxy-D-arabino-heptulosonate 7-phosphate

α-D-galactosyl-diphosphoundecaprenol

3-keto-β-D-galactose

(4S)-4-hydroxy-2-oxoheptanedioate

methylamine

malonate

2,6-dioxo-6-phenylhexa-3-enoate

(2E)-2-hydroxypenta-2,4-dienoate

(3E)-2-oxopent-3-enoate

2-oxopent-4-enoate

4-amino-4-deoxychorismate

cyanate

coproporphyrinogen III

3-oxopropanoate

acetoacetate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

6-phospho D-glucono-1,5-lactone

2-dehydro-3-deoxy-D-gluconate 6-phosphate

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

pyrazine-2-carboxylate

ethanolamine

3-deoxy-D-glycero-2,5-hexodiulosonate

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

oxalosuccinate

succinate semialdehyde

2-dehydropantoate

deoxyamidinoproclavaminate

amidinoproclavaminate

proclavaminate

dihydroclavaminate

clavaminate

xanthine

N-acetyl-D-muramate 6-phosphate

5-amino-6-(D-ribitylamino)uracil

(lipoyl)adenylate

1,6-anhydro-N-acetyl-β-muramate

GMP-N-ε-(N-α-acetyl lysine methyl ester) 5'-phosphoramidate

(S)-dihydroorotate

DNA without lesion

2-methyl-1,4-benzoquinone

methyl-1,4-benzoquinol

acetyl phosphate

4-maleyl-acetoacetate

4-fumaryl-acetoacetate

5-phospho-β-D-ribosylamine

dihydroxyacetone

urocanate

4-imidazolone-5-propanoate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N⁵-carboxyaminoimidazole ribonucleotide

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

4-hydroxy-2-nonenal

4-amino-2-methyl-5-pyrimidinemethanol

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

3-mercaptopyruvate

5-(methylsulfanyl)-α-D-ribose

5-deoxy-α-ribose 1-phosphate

S-ribosyl-L-homocysteine

carbonic acid

S-methyl-5'-thioadenosine

S-adenosyl 3-(methylsulfanyl)propylamine

prephenate

chloroacetaldehyde

γ-L-glutamyl 5-phosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

hydroxypyruvate

(5S)-5-benzyl-hydantoin

(5R)-5-benzyl-hydantoin

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2-C-methyl-D-erythritol 4-phosphate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

3'-phosphoadenylyl-sulfate

dimethylthiophosphate

tartronate semialdehyde

5-dehydro-4-deoxy-D-glucarate

5-methylcytosine

4-methylumbelliferyl glucoside

4-hydroxybenzaldehyde

scopolin

cis-coumarinic acid-β-D-glucoside

L-arogenate

3-methyl-2-oxobutanoate

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

indole-3-glycol

indole-3-glycol aldehyde

isobutanol

3-methylbutanol

3-methylbutanal

2-methylbutanol

2-methylbutanal

2-phenylethanol

citrate

N-Formyl-L-kynurenine

prenyl diphosphate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

3-phosphooxypyruvate

nitrilotriacetate

iminodiacetate

H₂

4-aminobutanoate

2-phosphoglycolate

glycolate

D-gluconate 6-phosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

(indol-3-yl)acetamide

propionamide

N-acetyl-β-D-mannosaminuronyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol

(enterobacterial common antigen)-undecaprenyl diphosphate

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

(E)-2-benzylidenesuccinyl-CoA

(E)-4-coumaroyl-CoA

2,3-didehydroadipyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

benzoylsuccinyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3α,7α-dihydroxy-24-oxo-5β-cholestanoyl CoA

3-oxo-3-phenylpropanoyl-CoA

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

oxaloacetate

phosphoenolpyruvate

2-maleylacetate

glycerone phosphate

4'-phosphopantetheine

orotidine 5'-phosphate

muconolactone

(+)-muconolactone

cis,cis-muconate

poly(ribitol phosphate)

O-D-alanyl-poly(ribitol phosphate)

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

4-acetamidobutanoate

urea

urea-1-carboxylate

2-keto-D-gluconate

oxalate

carbamoyl phosphate

L-β-lysine

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

glutathione disulfide

homogentisate

enol-phenylpyruvate

(2-hydroxyphenyl)acetate

4-amino-4-deoxy-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

UDP-4-deoxy-4-formamido-β-L-arabinopyranose

L-arginino-succinate

canavaninosuccinate

L-canavanine

hydrogen selenide

O-acetyl-L-serine

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

CO₂

1-pyrroline-2-carboxylate

propane-1,3-diamine

4-acetamidobutanal

(R)-6-hydroxynicotine

1-piperideine-2-carboxylate

L-pipecolate

1-piperideine 6-carboxylate

(-)-ephedrine

(R)-2-methylimino-1-phenylpropan-1-ol

dihydrochelirubine

dihydromacarpine

macarpine

dihydrosanguinarine

sanguinarine

(S)-2-amino-6-oxohexanoate

(S)-6-hydroxynicotine

thiamine phosphate

3-hydroxypropanoate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

methylsalicylate

salicyl alcohol

H₂O

3-hydroxy-3-methylglutarate

hydrogen peroxide

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

a mismatched DNA base pair

a properly matched DNA base pair

phenylacetate

ethylphosphate

protoheme

nitrous oxide

N₂

hydrogen cyanide

protoporphyrin IX

uroporphyrinogen-III

protoporphyrinogen IX

hydrogen sulfide

oxygen

2-chloroacetate

sn-glycerol 3-phosphate

2-O-(α-D-mannosyl)-3-phospho-D-glycerate

2-O-(α-D-mannosyl)-D-glycerate

(R)-glycerate

2,3-diphospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

α-D-glucosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

1-oleoyl-2-lyso-glycerone phosphate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

5,10-methenyltetrahydrofolate mono-L-glutamate

3-(all-trans-octaprenyl)benzene-1,2-diol

3-(all-trans-heptaprenyl)benzene-1,2-diol

3-(all-trans-decaprenyl)benzene-1,2-diol

3-(all-trans-nonaprenyl)benzene-1,2-diol

(S)-3-hydroxy-isobutanoate

2-nonaprenylphenol

2-decaprenylphenol

2-heptaprenylphenol

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

2-methoxy-6-(all-trans-heptaprenyl)phenol

6-(all-trans-decaprenyl)-2-methoxy-phenol

2-methoxy-6-(all-trans-nonaprenyl)phenol

monodehydroascorbate radical

hydroxyl radical

nitric oxide

superoxide

chloramphenicol 3-acetate

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

4-nitrophenol

S-(hydroxymethyl)glutathione

dimethyl sulfide

S-methyl-L-methionine

methionol

3-(methylsulfanyl)propanal

thiocyanate

glutathione

S-sulfanylglutathione

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

L-cysteate

3-sulfopyruvate

methanesulfonate

1-butanesulfonate

isethionate

3-(N-morpholino)propanesulfonate

(R)-S-lactoylglutathione

ammonium

Cu⁺

H⁺

Fe²⁺

Ni²⁺

Cu²⁺

trimethyl sulfonium

sulfate

hydrogensulfite

selenite

nitrite

nitrate

selenate

sulfite

hydrogencarbonate

thiosulfate

phosphate

triphosphate

diphosphate

chloride

N¹,N¹²-diacetylspermine

(2Z)-2-aminobut-2-enoate

2-iminopropanoate

2-aminoprop-2-enoate

agmatine

4-aminobutanal

N-acetylputrescine

N⁸-acetylspermidine

N¹-acetylspermine

N¹-acetylspermidine

spermine

spermidine

putrescine

3-acetylamino-4-hydroxybenzoate

3-acetylamino-4-hydroxybenzaldehyde

betaine aldehyde hydrate

choline

betaine aldehyde

glycine betaine

3-amino-4-hydroxybenzoate

3-amino-4-hydroxybenzaldehyde

sn-glycero-3-phosphocholine

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

fluoroacetaldehyde

fluoroacetate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

acetamide

(S)-(+)-allantoin

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

pyrazinamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

nicotinamide

heptadecane

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

(+)-7-epi-jasmonate

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

(S)-3-aminobutanoyl-CoA

isobutanoyl-CoA

phenylacetyl-CoA

itaconyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

malonyl-CoA

methylacrylyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-hydroxyisovaleryl-CoA

(E)-2-methylcrotonoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

(2E,5Z)-tetradecenoyl-CoA

vinylacetyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

(3R)-hydroxy-5-trans-dodecenoyl-CoA

(3S)-hydroxyadipyl-CoA

3α,7α,12α-trihydroxy-24-oxo-5-β-cholestanoyl CoA

choloyl-CoA

chenodeoxycholoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

benzoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

4-hydroxybenzoyl-CoA

3'-dephospho-CoA

α-linolenoyl-CoA

linoleoyl-CoA

formyl-CoA

oxalyl-CoA

acetyl-CoA

3-hydroxypropanoyl-CoA

dihomo γ-linolenoyl-CoA

succinyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E)-octadec-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dodec-2-enoyl-CoA

(S)-malyl-CoA

(3Z)-dodec-3-enoyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(Z)-15-tetracosenoyl-CoA

propanoyl-CoA

butanoyl-CoA

hexanoyl-CoA

octanoyl-CoA

decanoyl-CoA

lauroyl-CoA

icosanoyl-CoA

myristoyl-CoA

stearoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

3-oxoadipyl-CoA

acetoacetyl-CoA

3-oxohexanoyl-CoA

3-oxodecanoyl-CoA

3-oxododecanoyl-CoA

3-oxooctanoyl-CoA

3-oxo-palmitoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

all-trans-retinyl palmitate

L-galactono-1,4-lactone

cis-dienelactone

trans-dienelactone

D-glucono-1,5-lactone

N,N-dimethylglycine

FADH₂

FAD

FMNH₂

FMN

(S)-NADHX

(R)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

ubiquinol-9

ubiquinol-10

ubiquinol-7

ubiquinol-8

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-9

3-demethylubiquinol-10

3-demethylubiquinol-7

3-demethylubiquinol-8

(R)-lipoate

coenzyme A

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

L-ascorbate

nicotinate

riboflavin

thiamine

pyridoxine

pyridoxine 5'-phosphate

pyridoxal

pyridoxal 5'-phosphate

pyridoxamine

pyridoxamine 5'-phosphate

all-trans-retinol

(S)-1-pyrroline-5-carboxylate

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydropterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

6-carboxy-5,6,7,8-tetrahydropterin

adenine

guanine

2'-deoxyadenosine

2'-deoxyinosine

2'-deoxyguanosine

xanthosine

inosine

adenosine

guanosine

hypoxanthine

dGMP

dAMP

dIMP

dATP

dGTP

dITP

dIDP

dGDP

dADP

GDP

IDP

ADP

XMP

GMP

IMP

AMP

XTP

ITP

GTP

ATP

dCMP

dTMP

dTTP

dCTP

dUDP

dCDP

CDP

UTP

CTP

uridine 2'3'-cyclic monophosphate

cytidine 2',3'-cyclic monophosphate

cytosine

dTDP

UDP

uracil

dUTP

dUMP

orotate

uridine 3'-monophosphate

cytidine-3'-monophosphate

UDP-α-D-galacturonate

UDP-β-L-threo-pentapyranos-4-ulose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactose

UDP-α-D-glucuronate

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramate

UDP-α-D-glucose

UDP-N-acetyl-α-D-mannosamine

UDP-4-amino-4-deoxy-β-L-arabinopyranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-α-D-glucose

dTDP-4-acetamido-4,6-dideoxy-α-D-galactose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

5-fluorouracil

uridine

cytidine

2'-deoxycytidine

thymidine

2'-deoxyuridine

thymine

CMP

UMP

N¹-methyladenine

N3-methylcytosine

N¹-ethyladenine

preQ₁

baicalein

6,7-dehydrobaicalein

coumarin

scopoletin

4-methylumbelliferone

acrylonitrile

preQ₀

(indole-3-yl)acetonitrile

taxiphyllin

linustatin

neolinustatin

linamarin

lotaustralin

2-hydroxy-2-methylpropanenitrile

(2R)-2-hydroxy-2-methylbutanenitrile

salicylaldehyde

urate

4-hydroxybenzoate

4-vinylguaiacol

4-tyrosol

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

3-methoxy-4-hydroxyphenylglycol

methyl parathion

benzaldehyde

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

indole

hydroquinone

6-methoxy-3-methyl-2-all-trans-nonaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-heptaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-nonaprenyl-1,4-benzoquinol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

2-methoxy-6-all trans-heptaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-hydroxy-2-(6-oxo-1-oxaspiro[2.5]octa-4,7-dien-2-yl)-1-benzofuran-3-one

6-hydroxy-2-[hydroxy-(4-hydroxyphenyl)methyl]-1-benzofuran-3-one

2-[hydroperoxy(4-hydroxyphenyl)methyl]-6-hydroxy-1-benzofuran-3-one

4-methylphenol

2,3-dihydroxybenzoate

catechol

protocatechuate

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

ferulate

coumarinate

salicylate

4-aminobenzoate

benzoate

(3E)-2-oxohex-3-enedioate

chorismate

L-aspartate

fumarate

succinate

(R)-malate

(S)-malate

D-galactarate

D-glucarate

cis-homoaconitate

trans-aconitate

cis-aconitate

(2R,3S)-2-methylisocitrate

cis-2-methylaconitate

(2R)-homocitrate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

(S)-lactate

(R)-lactate

propanoate

formate

acetate

pyruvate

butanoate

octanoate

decanoate

laurate

3-oxoadipate

(15Z)-tetracosenoate

oleate

(3E,5Z)-tetradecadienoate

linoleate

di-homo-γ-linolenate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

apo-4'-lycopenoate

phytenate

pristanate

arachidate

myristate

stearate

palmitate

1-palmitoyl-2-linoleoyl-phosphatidylcholine

1-linoleoyl-sn-glycero-3-phosphocholine

5-deoxy-D-glucuronate

(R)-pantoate

D-mannonate

D-gluconate

D-tagaturonate

aldehydo-D-galacturonate

aldehydo-D-glucuronate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

4-(methylsulfanyl)-2-oxobutanoate

2-oxobutanoate

glyoxylate

2-oxoglutarate

carbamate

L-serine

β-alanine

(R)-β-lysine

(S)-3-amino-2-methylpropanoate

L-leucine

L-glutamine

L-proline

glycine

L-alanine

D-glutamate

L-glutamate

L-histidine

L-lysine

L-arginine

L-cysteine

L-threonine

L-tyrosine

L-asparagine

L-phenylalanine

L-tryptophan

D-cysteine

D-aspartate

D-alanine

seleno-L-homocysteine

L-selenomethionine

L-2-amino-3-oxobutanoate

D-nopaline

L-saccharopine

alanopine

sarcosine

N⁶-methyl-L-lysine

N-methyl-L-tryptophan

D-lysopine

D-octopine

formyl-L-isoglutamine

N-formyl-L-glutamate

N-formimino-L-glutamate

N-acetyl-L-ornithine

N-acetyl-L-citrulline

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

N-α-acetyl lysine methyl ester

3-phospho-L-serine

L-citrulline

L-valine

1-aminocyclopropane-1-carboxylate

L-ornithine

L-glutamate-5-semialdehyde

L-homoserine

O-phospho-L-homoserine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

S-sulfo-L-cysteine

L-homocysteine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-selenocysteine

L-methionine

L-isoglutamine

L-cystathionine

a coenzyme-A group

methylglyoxal

diacetyl

6-hydroxypseudooxynicotine

(S)-acetoin

(R)-acetoin

glycolaldehyde

3-(N-morpholino)propanal

3-acetamidopropanal

butan-1-al

1-propanal

isobutanal

1-octanal

acetaldehyde

formaldehyde

(S)-lactaldehyde

(R)-lactaldehyde

phytenal

L-glyceraldehyde

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

aldehydo-D-mannose

β-D-mannopyranose

β-D-galactopyranose

α-D-galactopyranose

α-L-rhamnopyranose

β-L-rhamnopyranose

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

butan-1-ol

propan-1-ol

ethanol

methanol

phytol

glycerol

D-ribitol

galactitol

D-mannitol

ethylene glycol

(S)-propane-1,2-diol

(R)-propane-1,2-diol

(S,S)-2,3-butanediol

(R,R)-2,3-butanediol

1D-chiro-inositol

scyllo-inositol

myo-inositol

1-keto-D-chiro-inositol

3D-(3,5/4)-trihydroxycyclohexane-1,2-dione

scyllo-inosose

1D-myo-inositol 4-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 2-monophosphate

1D-myo-inositol 3-monophosphate

1D-myo-inositol 1-monophosphate

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

1-oleoyl-sn-glycerol 3-phosphate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

dioleoyl phosphatidate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

apo-4'-lycopenal

geranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

(2E,6E)-farnesyl diphosphate

trans,octacis-decaprenyl phosphate

3-nonaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-nonaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

4'-α-L-Ara4N-α-Kdo-(2→4)-α-Kdo-(2→6)-[P4'-α-L-ara4N]-lipid A

betanidin

betanidin quinone

chelirubine

5-dehydro-4-deoxy-D-glucuronate

XXLG xyloglucan oligosaccharide

XLXG xyloglucan oligosaccharide

XLLG xyloglucan oligosaccharide

XXXG xyloglucan oligosaccharide

raffinose

maltotriose

stachyose

cellotetraose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

α-maltose

allolactose

melibiose

sucrose

α-lactose

β-D-cellobiose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

keto-D-fructose

β-D-fructofuranose

keto-L-rhamnulose

D-xylulose

D-ribulose

L-ribulose

3-dehydro-D-glucopyranose

3'-ketolactose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-ribulose-1,5-bisphosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

N,N'-diacetylchitobiose 6'-phosphate

sucrose 6^G-phosphate

sucrose 6^F-phosphate

N-monoacetylchitobiose 6'-phosphate

β-D-cellobiose 6'-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

GDP-α-D-glucose

ADP-α-D-glucose

GDP-α-D-mannose

GDP-4-dehydro-α-D-rhamnose

GDP-β-L-fucose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

arbutin-6-phosphate

salicin 6-phosphate

D-fructose 6-phosphate

D-tagatofuranose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

α-D-galactose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 1-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-rhamnulose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

methyl β-D-glucoside 6-phosphate

aldehydo-L-galactonate

L-gulonate

D-altronate

8-oxo-GTP

8-oxo-GMP

8-oxo-dGTP

8-oxo-dGMP

5'-deoxyadenosine

cyclic-AMP

guanosine 2',3'-cyclic monophosphate

adenosine 2',3'-cyclic monophosphate

adenylo-succinate

pppGpp

ppGpp

adenosine 3'-monophosphate

guanosine 3'-monophosphate

5-fluorocytosine

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

reduced β-nicotinamide D-ribonucleotide

β-nicotinamide D-ribonucleotide

cyclic di-3',5'-guanylate

2-iminobutanoate

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

D-alanyl-D-alanine

an unsaturated pectate trisaccharide

4-(4-deoxy-α-D-galact-4-enuronosyl)-D-galacturonate

4-deoxy-L-threo-hex-4-enopyranuronate