an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

S-ribosyl-L-homocysteine

O-ureido-L-homoserine

nicotinate adenine dinucleotide

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-phospho-β-D-ribosylamine

N⁵-carboxyaminoimidazole ribonucleotide

dihydroxyacetone

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

quinolinate

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

ethanolamine

L-selenocystathionine

α-D-glucosamine 1-phosphate

1,6-anhydro-N-acetyl-β-muramate

coproporphyrinogen III

4-amino-2-methyl-5-pyrimidinemethanol

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

2,3-didehydroadipyl-CoA

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

N-succinyl-L,L-2,6-diaminopimelate

N-succinyl-2-amino-6-ketopimelate

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

ManNAc-GlcNAc-PP-undecaprenol

2-keto-D-gluconate

2,5-didehydro-D-gluconate

indole-3-glycol

indole-3-glycol aldehyde

3-methylbutanol

3-methylbutanal

isobutanol

2-methylbutanol

2-methylbutanal

2-phenylethanol

5-hydroxytryptophol

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

histidinal

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

5-aminolevulinate

porphobilinogen

preuroporphyrinogen

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

hydrogen selenide

O-acetyl-L-serine

3-deoxy-D-arabino-heptulosonate 7-phosphate

5-dehydro-4-deoxy-D-glucarate

(2S,3S)-2,3-dihydroxy-5-oxohexanedioate

tartronate semialdehyde

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

urea

arsenite

N-(5-phosphoribosyl)-anthranilate

anthranilate

shikimate

O-phosphoethanolamine

carboxyphosphate

orotidine 5'-phosphate

(S)-dihydroorotate

carbamoyl phosphate

3-dehydroquinate

3-dehydroshikimate

L-histidinol phosphate

histidinol

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

carbon monoxide

5-dehydro-D-gluconate

3-deoxy-D-glycero-2,5-hexodiulosonate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

canavaninosuccinate

L-canavanine

L-arginino-succinate

quercitrin

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

2-dehydropantoate

(R)-1-aminopropan-2-ol

(R)-1-amino-2-propanol O-2-phosphate

hydrogenobyrinate

(S)-4-amino-5-oxopentanoate

(2E)-hexadecenal

prop-2-ynal

propynoate

imidazole acetaldehyde

4-imidazoleacetate

4-acetamidobutanoate

dimethylsulfoniopropanoate

D-glucurono-6,3-lactone

5-hydroxyindole acetate

palmitaldehyde

prenyl diphosphate

prephenate

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

5-hydroxyindole acetaldehyde

5-methoxytryptamine

5-methoxyindoleacetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

tryptamine

4-acetamidobutanal

methylamine

3,4-dihydroxyphenylacetaldehyde

β-D-ribosylnicotinate

isochorismate

(2,3-dihydroxybenzoyl)adenylate

(L-aspartyl)adenylate

4'-phosphopantetheine

H₂

2-dehydro-3-deoxy-D-gluconate

(R)-pantothenate

(R)-4'-phosphopantothenate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

citraconate

glutathione disulfide

crotonate

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

β-nicotinate D-ribonucleotide

hydrogen peroxide

(S)-2,3,4,5-tetrahydrodipicolinate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

4-aminobutanoate

succinate semialdehyde

3-oxopropanoate

xanthine

salicyl alcohol

methylsalicylate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2-C-methyl-D-erythritol 4-phosphate

isopentenyl diphosphate

hydroxypyruvate

acetoacetate

aminoacetone

2-phosphoglycolate

glycolate

glycerone phosphate

phosphoenolpyruvate

oxaloacetate

citrate

oxalosuccinate

3-methyl-2-oxobutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

3-phosphooxypyruvate

γ-L-glutamyl 5-phosphate

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

CO₂

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

H₂O

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1-piperideine 6-carboxylate

1,2-dihydro-β-NADP

enol-phenylpyruvate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-hydroxyindole thiazolidine carboxylate

ammonia

dialurate

glutathioselenol

2-amino-3-carboxymuconate-6-semialdehyde

octopamine

(R)-synephrine

selenodiglutathione

2-keto-L-gulonate

acrylate

CDP-glycerol

autoinducer 2

2-dehydro-3-deoxy-D-galactonate 6-phosphate

3-hydroxypropanoate

(4-hydroxyphenyl)acetate

(S)-mandelate

(R)-mandelate

6-phospho D-glucono-1,5-lactone

S-adenosyl 3-(methylsulfanyl)propylamine

S-methyl-5'-thioadenosine

deethylsimazine

N-ethylammeline

2-oxopent-4-enoate

(S)-4-hydroxy-2-oxopentanoate

(4Z)-2-oxohept-4-enedioate

2-maleylacetate

L-gulono-1,4-lactone

5-methylcytosine

N-acetyl-D-muramate 6-phosphate

1,4-dihydroxy-2-naphthoate

carboxynorspermidine

norspermidine

31-O-desmethylFK-506

FK-506

(4S)-4-hydroxy-2-oxoheptanedioate

D-galacto-hexodialdose

carbonic acid

4-amino-4-deoxychorismate

hydrogenobyrinate a,c-diamide

(S)-2,3-dihydrodipicolinate

(S)-2-amino-6-oxohexanoate

β-D-fructose 2,6-bisphosphate

DNA without lesion

2-dehydro-3-deoxy-D-galactonate

(R)-4'-phosphopantothenoyl-L-cysteine

α-ribazole

urocanate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

luteolin 7-O-β-D-glucuronide

luteolin 7-O-[β-D-glucosyluronate-(1,2)-β-D-glucosiduronate]-4'-O-β-D-glucosiduronate

luteolin 7-O-β-D-diglucuronide

creatinine

D-gluconate 6-phosphate

urea-1-carboxylate

tetrahydrogeranylgeranyl diphosphate

dihydrogeranylgeranyl diphosphate

acetyl phosphate

L-homocysteine

4-methylphenol

ω-saturated C55 dolichol phosphate

DNA with lesion

phenylacetate

ethylphosphate

phosphonoacetaldehyde

(2-aminoethyl)phosphonate

N₂

adenosylcobalamin

cob(I)alamin

cob(I)inamide

cob(I)yrinate a,c-diamide

adenosylcobinamide

adenosyl-cobinamide phosphate

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobyrate

cobalt-precorrin-5A

cobalt-precorrin-2

cobalt-precorrin-3

cobalt-sirohydrochlorin

cobalt-factor III

cobalt-precorrin-5B

cobalt-precorrin-6A

Mg-protoporphyrin

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

adenosylcobalamin 5'-phosphate

adenosylcobinamide-GDP

protoheme

protoporphyrinogen IX

uroporphyrinogen-III

uroporphyrinogen-I

protoporphyrin IX

oxygen

hydrogen sulfide

2-iminosuccinate

2-iminopropanoate

4-[(2Z)-2-(methylimino)ethyl]phenol

4-(2-iminoethyl)phenol

2-iminobutanoate

2-chloroacetate

β-D-mannosyl-(C55 ω-saturated dolichyl phosphate)

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

N-acetyl-D-mannosamine 6-phosphate

(R)-citramalate

(S)-citramalate

(S)-methylmalonate-semialdehyde

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

ethene

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

fluoroacetaldehyde

fluoroacetate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

4-nitrophenol

p-nitrophenyl-α-L-rhamnopyranoside

FADH₂

FMN

FAD

FMNH₂

(S)-NADHX

(R)-NADHX

menaquinol-12

menaquinol-9

menaquinol-10

menaquinol-11

menaquinol-7

menaquinol-8

menaquinol-6

menaquinol-13

demethylmenaquinol-12

demethylmenaquinol-9

demethylmenaquinol-10

demethylmenaquinol-11

demethylmenaquinol-7

demethylmenaquinol-8

demethylmenaquinol-6

demethylmenaquinol-13

NADPH

NADH

NADP⁺

NAD⁺

superoxide

hydroxyl radical

(2E,6E)-farnesyl diphosphate

pristanate

N-acetyl-β-neuraminate

Fe³⁺

K⁺

H⁺

ammonium

Ca²⁺

Fe²⁺

Cu²⁺

Zn²⁺

Cd²⁺

Mg²⁺

selenate

thiosulfate

hydrogencarbonate

selenide

OH^-

selenite

sulfate

chloride

phosphate

triphosphate

diphosphate

methionol

3-(methylsulfanyl)propanal

S-methyl-L-methionine

3-dimethylsulfoniopropionaldehyde

S-(hydroxymethyl)glutathione

methanethiol

glutathione

5-(2-hydroxyethyl)-4-methylthiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

L-cysteate

3-sulfopyruvate

(R)-S-lactoylglutathione

2-aminoprop-2-enoate

4-[(Z)-2-aminoethenyl]phenol

4-[(E)-2-(methylamino)ethenyl]phenol

(2Z)-2-aminobut-2-enoate

agmatine

N-acetylputrescine

N¹-acetylspermine

N¹-acetylspermidine

putrescine

spermine

spermidine

cadaverine

tyramine

2-phenylethylamine

serotonin

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

4-tyrosol

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

salicylaldehyde

urate

4-hydroxybenzoate

3-methoxy-4-hydroxyphenylglycol

vanillyl mandelate

metanephrine

normetanephrine

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

benzaldehyde

hydroquinone

indole

(indol-3-yl)acetaldehyde

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

coumarinate

(+)-taxifolin

quercetin

luteolin

quercetin-3-glucoside

rutin

(+)-dihydromyricetin

(+)-dihydrokaempferol

(2R,3S,4S)-leucodelphinidin

(2R,3S,4S)-leucopelargonidin

(2R,3S,4S)-leucocyanidin

hesperidin

naringin

prunin

hesperitin-7-O-β-D-glucoside

coumarin

3,4-dihydroxyphenylglycol

3,4-dihydroxymandelate

3,4-dihydroxyphenylacetate

(R)-noradrenaline

(R)-adrenaline

3,4-dihydroxyphenylglycolaldehyde

dopamine

2,3-dihydroxybenzoate

protocatechuate

salicylate

benzoate

4-aminobenzoate

preQ₀

coenzyme A

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

riboflavin

nicotinate

thiamine

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxamine 5'-phosphate

all-trans-retinol

glycocholate

cholate

(+)-7-epi-jasmonate

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

D-glucono-1,5-lactone

cis-dienelactone

trans-dienelactone

all-trans-retinyl palmitate

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

methylacrylyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-hydroxyisovaleryl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

3'-dephospho-CoA

succinyl-CoA

malonyl-CoA

phenylacetyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

acetyl-CoA

acryloyl-CoA

(R)-2-hydroxyglutaryl-CoA

(E)-glutaconyl-CoA

4-hydroxybenzoyl-CoA

(+)-7-epi-jasmonoyl-CoA

isobutanoyl-CoA

oleoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

18-hydroxylinoleoyl-CoA

7-hydroxylauroyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxystearoyl-CoA

18-hydroxyoleoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

(Z)-15-tetracosenoyl-CoA

butanoyl-CoA

propanoyl-CoA

hexanoyl-CoA

decanoyl-CoA

lauroyl-CoA

octanoyl-CoA

pristanoyl-CoA

myristoyl-CoA

cis-vaccenoyl-CoA

palmitoleoyl-CoA

palmitoyl-CoA

stearoyl-CoA

hexadecanedioyl-CoA

acetoacetyl-CoA

(S)-methylmalonyl-CoA

crotonyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

phytenoyl-CoA

trans-hex-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

cephalosporin C

deacetylcephalosporin C

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

Gro-P-ManNAc-GlcNAc-PP-undecaprenol

chorismate

succinate

fumarate

L-aspartate

(S)-malate

D-glucarate

α,ω-9Z-octadecenedioate

cis-aconitate

cis-homoaconitate

3-carboxy-cis,cis-muconate

(2R)-homocitrate

D-threo-isocitrate

3-oxoadipate

pyruvate

acetate

formate

propanoate

(S)-lactate

(R)-lactate

butanoate

7-hydroxylaurate

decanoate

laurate

octanoate

sophorosyloxydocosanoate

13-sophorosyloxydocosanoate 6',6''-diacetate

13-[O(2')-β-D-glucopyranosyl-β-D-glucopyranosyloxy]docosanoate O(6'')-acetate

16-hydroxypalmitate

18-hydroxystearate

18-hydroxyoleate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

leukotriene-D4

leukotriene-E4

(15Z)-tetracosenoate

oleate

palmitate

stearate

linoleate

α-linolenate

(2E)-hexadecenoate

phytenate

orotate

D-gluconate

(R)-pantoate

D-mannonate

(S)-1-pyrroline-5-carboxylate

D-tagaturonate

4-deoxy-L-threo-hex-4-enopyranuronate

β-D-glucuronate

aldehydo-D-galacturonate

carbamate

L-α-amino-ε-keto-pimelate

L-isoleucine

L-leucine

L-valine

L-phenylalanine

L-selenocysteine

L-tryptophan

L-proline

glycine

L-alanine

L-methionine

L-cysteine

L-serine

creatine

β-alanine

L-glutamine

D-glutamate

L-glutamate

L-histidine

L-lysine

L-arginine

L-tyrosine

D-alanine

D-aspartate

L-saccharopine

seleno-L-homocysteine

L-selenomethionine

L-2-amino-3-oxobutanoate

L-aspartyl-4-phosphate

sarcosine

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

N-acetyl-L-glutamate

L-threonine 3-O-phosphate

3-phospho-L-serine

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L-cystathionine

L,L-diaminopimelate

L-threonine

L-asparagine

L-ornithine

L-citrulline

L-homoserine

O-phospho-L-homoserine

O-succinyl-L-homoserine

S-sulfo-L-cysteine

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-cystine

L-aspartate 4-semialdehyde

L-glutamate-5-semialdehyde

meso-diaminopimelate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

glyoxylate

2-oxobutanoate

2-oxoglutarate

4-(methylsulfanyl)-2-oxobutanoate

glycerophosphoserine

glycerophosphoglycerol

sn-glycero-3-phosphoethanolamine

glycerol

D-sorbitol

L-iditol

D-mannitol 1-phosphate

propan-1-ol

ethanol

methanol

butan-1-ol

phytol

ethylene glycol

(R)-propane-1,2-diol

(S)-propane-1,2-diol

myo-inositol

1D-myo-inositol 6-monophosphate

1D-myo-inositol 3-monophosphate

1D-myo-inositol 4-monophosphate

1D-myo-inositol 2-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 1-monophosphate

sphinganine 1-phosphate

phytosphingosine 1-phosphate

geranyl diphosphate

phytyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-heptaprenyl diphosphate

geranylgeranyl diphosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-palmitoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-palmitoyl-2-myristoyl phosphatidate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

dioleoyl phosphatidate

iron(III) dicitrate

ferric-enterobactin complex

3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(cysteinyl)- 6-(hydroxymethyl)-diketopiperazine

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

β-D-fructofuranose

β-L-rhamnopyranose

α-L-rhamnopyranose

β-L-fucopyranose

α-L-fucopyranose

keto-D-fructose

keto-L-sorbose

D-xylulose

L-ribulose

D-ribulose

β-D-ribopyranose

α-D-ribofuranose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-β-D-mannosamine

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

α-D-glucopyranose

β-D-glucopyranose

α-D-galactopyranose

β-D-galactopyranose

D-glyceraldehyde

glycolaldehyde

L-fuculose

keto-L-rhamnulose

XXXG xyloglucan oligosaccharide

unsaturated gellan tetrasaccharide

maltotriose

XLLG xyloglucan oligosaccharide

XXLG xyloglucan oligosaccharide

XLXG xyloglucan oligosaccharide

selaginose

raffinose

β-D-Glcp-(1→4)-α-L-Rhap-(1→3)-D-Glcp

maltotetraose

stachyose

maltoheptaose

maltohexaose

maltopentaose

sucrose

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine

α,α-trehalose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide

a mature peptidoglycan_(n) (meso-DAP containing)

a nascent peptidoglycan with L,D cross links (meso-diaminopimelate containing)

a mature peptidoglycan with L,D cross-links (meso-diaminopimelate containing)

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a mature peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-ribulose-1,5-bisphosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

N-monoacetylchitobiose 6'-phosphate

N,N'-diacetylchitobiose 6'-phosphate

UDP-α-D-glucose

dTDP-α-D-glucose

CDP-α-D-glucose

ADP-α-D-glucose

UDP-N-acetyl-α-D-muramate

UDP-α-D-galactose

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

GDP-4-dehydro-α-D-rhamnose

GDP-α-D-mannose

GDP-β-L-fucose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

4-phospho-D-erythronate

D-sedoheptulose 1,7-bisphosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

β-D-fructose 1,6-bisphosphate

D-tagatofuranose 1,6-bisphosphate

arbutin-6-phosphate

salicin 6-phosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

α-D-ribose-1-phosphate

D-ribulose 1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-rhamnulose 1-phosphate

L-fuculose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

methyl β-D-glucoside 6-phosphate

D-altronate

L-idonate

L-gulonate

D-galactonate

diacetyl

methylglyoxal

6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone

3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone

decanal

dodecanal

phytenal

1-propanal

isobutanal

formaldehyde

1-octanal

acetaldehyde

butan-1-al

(R)-lactaldehyde

(S)-lactaldehyde

precorrin-1

precorrin-7

precorrin-8x

precorrin-6B

precorrin-3B

precorrin-4

precorrin-5

precorrin-2

precorrin-3A

precorrin-6A

dTTP

dUDP

dUMP

CDP

dCMP

dCDP

uracil

dUTP

UTP

dCTP

dTMP

dTDP

CTP

UDP

cytosine

dipicolinate

5-fluorouracil

uridine

cytidine

2'-deoxyuridine

thymidine

2'-deoxycytidine

CMP

UMP

thymine

guanine

hypoxanthine

adenine

isoguanine

preQ₁

inosine

adenosine

guanosine

xanthosine

2'-deoxyadenosine

2'-deoxyinosine

2'-deoxyguanosine

IDP

GDP

ADP

ITP

GTP

ATP

XTP

IMP

GMP

XMP

AMP

dGTP

dATP

dITP

dGDP

dADP

dIMP

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

7,8-dihydropteroate

1-(5-phospho-β-D-ribosyl)-ATP

adenylo-succinate

pppGpp

ppGpp

5'-deoxyadenosine

8-oxo-GTP

8-oxo-dGTP

1-(5-phospho-β-D-ribosyl)-AMP

5-fluorocytosine

(5R)-5,6-dihydro-5-(thymidin-7-yl)thymidine (in DNA)

two adjacent thymidines in DNA

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CTP

5-hydroxy-CMP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA