an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2-hydroxy-4-carboxymuconate semialdehyde hemiacetal

5,6-dihydroxyindole

ammonia

enol-phenylpyruvate

S-(hydroxymethyl)mycothiol

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

2-pyrone-4,6-dicarboxylate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1-piperideine 6-carboxylate

4-oxoglutaramate

protoanemonin

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

chloroacetaldehyde

S-ribosyl-L-homocysteine

autoinducer 2

L-dopachrome

2-amino-3-carboxymuconate-6-semialdehyde

12α-hydroxy-3-oxochol-4-en-24-oyl-CoA

12α-hydroxy-3-oxochol-4,6-dien-24-oyl-CoA

7α,12α-dihydroxy-3-oxochol-4-en-24-oyl-CoA

1-(2-acetamido-2-deoxy-α-D-glucopyranosyl)-1D-myo-inositol

1,4-dihydroxy-2-naphthoate

formamide

1-pyrroline

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

selenodiglutathione

glutathioselenol

hydrogen selenide

5-aminopentanoate

(2R,4S)-2, 4-diaminopentanoate

(2R)-2-amino-4-oxopentanoate

glutathione disulfide

(R)-1-amino-2-propanol O-2-phosphate

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-dehydro-3-deoxy-D-gluconate 6-phosphate

(E)-2-methylgeranyl diphosphate

2-methylisoborneol

(L-seryl)adenylate

(2,3-dihydroxybenzoyl)adenylate

cyanamide

2-dehydro-3-deoxy-D-gluconate

creatinine

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

2-(4-hydroxyphenyl)-2-oxoacetate

phenylglyoxylate

(R)-1-aminopropan-2-ol

(S)-mandelate

(R)-mandelate

2-aminoacetaldehyde

oxalosuccinate

5-dehydro-2-deoxy-D-gluconate 6-phosphate

5-dehydro-2-deoxy-D-gluconate

squalene

hop-22(29)-ene

(S)-2-amino-6-oxohexanoate

dimethylamine

aminoacetone

4-carboxy-2-hydroxymuconate-6-semialdehyde

6-chloro-2-hydroxy-4-carboxymuconate-6-semialdehyde

(lipoyl)adenylate

3-ureidopropanoate

(S)-ureidoglycolate

(S)-5-hydroxyisourate

tartronate semialdehyde

3'-phosphoadenylyl-sulfate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

3-deoxy-α-D-manno-2-octulosonate

O-ureido-L-homoserine

4-amino-2-methyl-5-pyrimidinemethanol

citraconate

(2R,3S)-3-methylmalate

2-isopropylmaleate

N-carbamoylputrescine

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

N-succinyl-L,L-2,6-diaminopimelate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

3-hydroxypropanoate

5-methylcytosine

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

betaine aldehyde

(R)-4'-phosphopantothenate

α-D-glucosamine 1-phosphate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

oxalate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

4-phosphooxy-L-threonine

N-acetyl-D-muramate 6-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2-C-methyl-D-erythritol 4-phosphate

1-O-(2-acetamido-2-deoxy-α-D-glucopyranosyl)-1D-myo-inositol 3-phosphate

3-oxocholoyl-CoA

allopregnanolone

deoxycholoyl-CoA

12α-hydroxy-3-oxocholan-24-oyl-CoA

β-D-ribosylnicotinate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-4-deoxychorismate

4-methyl-2-oxopentanoate

2-methyl-1,4-benzoquinone

methyl-1,4-benzoquinol

succinate semialdehyde

N-Formyl-L-kynurenine

4-aminobutanoate

(R)-pantothenate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

porphobilinogen

(E)-3-(methoxycarbonyl)pent-2-enedioate

urocanate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

7,8-didemethyl-8-hydroxy-5-deazariboflavin

(2S)-lactyl-2-diphospho-5'-guanosine

preuroporphyrinogen

(2-hydroxyphenyl)acetate

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

3-oxopropanoate

γ-L-glutamyl 5-phosphate

coproporphyrinogen III

(2S)-2-isopropylmalate

S-adenosyl 3-(methylsulfanyl)propylamine

S-methyl-5'-thioadenosine

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

4-prenylphlorisobutyrophenone

prenyl diphosphate

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

(24E)-3α,7α-dihydroxy-5β-cholest-24-enoyl-CoA

(24R,25R)-3α,7α,24-trihydroxy-5β-cholestanoyl CoA

carbon monoxide

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

quinolinate

N-(5-phosphoribosyl)-anthranilate

anthranilate

methylamine

N-ethylglycine

ethylamine

2-iminoacetate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

histidinal

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

3-dehydroshikimate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

5-dehydro-4-deoxy-D-glucarate

2,5-dioxopentanoate

ectoine

(2S)-4-acetamido-2-aminobutanoate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

homogentisate

4-maleyl-acetoacetate

D-gluconate 6-phosphate

1-(2-amino-2-deoxy-α-D-glucopyranosyl)-1D-myo-inositol

N-acetylglutamyl-phosphate

L-arginino-succinate

canavaninosuccinate

L-canavanine

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

shikimate

shikimate 3-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

(S)-dihydroorotate

carbamoyl phosphate

carboxyphosphate

(R)-4'-phosphopantothenoyl-L-cysteine

4'-phosphopantetheine

5-amino-6-(D-ribitylamino)uracil

N-acetyl-L-glutamate 5-semialdehyde

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

7,8-diaminopelargonate

dethiobiotin

pimeloyl-CoA

8-amino-7-oxononanoate

urea

3-(4-deoxy-β-D-gluc-4-enuronosyl)-N-acetyl-D-glucosamine

diethylthiophosphate

diethylphosphate

dimethylthiophosphate

DNA without lesion

carbonic acid

3-carboxy-2,5-dihydro-5-oxofuran-2-acetate

L-histidinol phosphate

histidinol

4-hydroxy-2-nonenal

L-selenocystathionine

L-gulono-1,4-lactone

3-maleylpyruvate

3-fumarylpyruvate

nicotinate adenine dinucleotide

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

2-dehydropantoate

5-oxo-L-proline

glycolate

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

4-fumaryl-acetoacetate

acetoacetate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(4Z)-2-oxohept-4-enedioate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

6-phospho D-glucono-1,5-lactone

salicyl alcohol

methylsalicylate

2-maleylacetate

isopentenyl diphosphate

β-nicotinate D-ribonucleotide

4-pyridoxolactone

dihydroxyacetone

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

xanthine

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

1,6-anhydro-N-acetyl-β-muramate

prephenate

5-hydroxyindole acetaldehyde

5-hydroxyindole acetate

3-methoxy-4-hydroxyphenylglycolaldehyde

prop-2-ynal

propynoate

palmitaldehyde

dimethylsulfoniopropanoate

imidazole acetaldehyde

4-imidazoleacetate

D-glucurono-6,3-lactone

3,4-dihydroxyphenylacetaldehyde

(2E)-hexadecenal

4-acetamidobutanal

4-acetamidobutanoate

(3R,6R)-1,3,4,6-tetrachlorocyclohexa-1,4-diene

1,2-dichloroethane

2-chloroethanol

(1S,4R)-2,4,5-trichloro-2,5-cyclohexadiene-1-diol

(1S,4S)-2,5-dichloro-2,5-cyclohexadiene-1,4-diol

citrate

hydrogen peroxide

1-deoxy-L-glycero-tetrulose 4-phosphate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

4-methylsalicylate

5-methylsalicylate

phosphoenolpyruvate

4-imidazolone-5-propanoate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

2,3-didehydroadipyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

5-dehydro-D-gluconate

ethanolamine

orotidine 5'-phosphate

formate

L-arabinonate

2-dehydro-3-deoxy-L-arabinonate

acetyl phosphate

glycerone phosphate

oxaloacetate

urea-1-carboxylate

CO₂

4-methyl-3-oxoadipate-enol-lactone

4-methyl-3-oxoadipate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

3-phosphooxypyruvate

4-hydroxybenzaldehyde

H₂O

(2Z)-2-aminobut-2-enoate

2-iminopropanoate

2-aminoprop-2-enoate

N¹-(3-aminopropyl)agmatine

agmatine

4-aminobutanal

cadaverine

spermidine

putrescine

DNA with lesion

thiamine

riboflavin

nicotinate

cob(I)alamin

adenosylcobalamin

all-trans-retinol

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

pyridoxal

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

menadione

(glutathion-S-yl)-4-hydroxy-2-nonenal

phenylacetate

ethylphosphate

carboxyphosphinopyruvate

3-(hydroxyphosphinoyl)pyruvate

1-carboxyvinyl carboxyphosphonate

hydrogen cyanide

adenosylcobalamin 5'-phosphate

adenosylcobinamide-GDP

cob(I)yrinate a,c-diamide

cob(I)inamide

cobalt-precorrin-6B

cobalt-precorrin-6A

adenosylcobinamide

adenosyl-cobinamide phosphate

hemin

cob(II)yrinate c-monoamide

cobyrinate

Mg-protoporphyrin

cob(II)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobyrate

protoheme

uroporphyrinogen-I

coproporphyrinogen I

uroporphyrinogen-III

protoporphyrinogen IX

protoporphyrin IX

siroheme

hydrogen sulfide

oxygen

2-iminosuccinate

2-iminobutanoate

2-chloroacetate

β-D-mannosyl-(C55 ω-saturated dolichyl phosphate)

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

2-O-(α-D-glucopyranosyl)-D-glycerate

2-[2-O-(α-D-mannopyranosyl)-(1→2)-α-D-glucopyranosyl]-3-phospho-D-glycerate

2-[2-O-(α-D-mannopyranosyl)-(1→2)-α-D-glucopyranosyl]-D-glycerate

2-O-(α-D-glucopyranosyl)-3-phospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2S)-2-phospholactate

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

CMP-N-acetyl-β-neuraminate

(R)-citramalate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

3-(all-trans-octaprenyl)benzene-1,2-diol

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

(S)-2-hydroxyglutarate

bromochloromethane

fluoroacetaldehyde

fluoroacetate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

3-chloro-cis,cis-muconate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

2,5-dichlorophenol

5-chlorosalicylate

4-chlorosalicylate

4-chlorocatechol

FAD

FADH₂

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

caldariellaquinone

caldariellaquinol

demethylmenaquinol-9

demethylmenaquinol-10

demethylmenaquinol-6

demethylmenaquinol-7

demethylmenaquinol-12

demethylmenaquinol-13

demethylmenaquinol-11

demethylmenaquinol-8

ubiquinol-8

menaquinol-9

menaquinol-10

menaquinol-6

menaquinol-7

menaquinol-12

menaquinol-13

menaquinol-11

menaquinol-8

3-demethylubiquinol-8

glycine betaine

preQ₀

parathion

paraoxon

4-nitrophenol

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

D-alanyl-D-lactate

N-acetyl-β-neuraminate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-cysteinylglycine

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sulfate

hydrogensulfite

OH^-

superoxide

selenite

selenate

thiosulfate

sulfite

molybdate

hydrogencarbonate

nitrite

nitrate

bromide

chloride

phosphate

triphosphate

diphosphate

Fe³⁺

ammonium

K⁺

H⁺

Mg²⁺

Co²⁺

Zn²⁺

Cu²⁺

Cd²⁺

Fe²⁺

hydroxyl radical

(2E,6E)-farnesyl diphosphate

pristanate

androsterone

testosterone

17-β-hydroxy-5-α-androstan-3-one

campest-4-en-3-one

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

(+)-7-epi-jasmonate

sn-glycero-3-phosphoethanolamine

glycerophosphoserine

glycerophosphoglycerol

S-(hydroxymethyl)glutathione

3-dimethylsulfoniopropionaldehyde

mycothiol

thiocyanate

deacetylmycothiol

glutathione

S-sulfanylglutathione

5-(2-hydroxyethyl)-4-methylthiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

taurine

L-cysteate

3-sulfopyruvate

dodecyl sulfate

3-sulfino-L-alanine

ergosteryl oleate

lanosteryl oleate

all-trans-retinyl palmitate

cis-dienelactone

trans-dienelactone

D-glucono-1,5-lactone

phenylacetyl-CoA

(3E)-undec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

formyl-CoA

oxalyl-CoA

salicyl-CoA

gentisyl-CoA

(2S)-ethylmalonyl-CoA

(2R)-ethylmalonyl-CoA

choloyl-CoA

6-trans-tridecenoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

4-cis-undecenoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

6-cis-tridecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(5Z)-tetradecenoyl-CoA

(2E,5Z)-tetradecenoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

5-cis, 7-trans-tetradecadienoyl-CoA

2-trans, 5-cis, 7-trans-tetradecatrienoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoyl-CoA

4-trans-undecenoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(+)-7-epi-jasmonoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(24R,25R)-3α,7α,12α,24-tetrahydroxy-5β-cholestanoyl CoA

(24E)-3α,7α,12α-trihydroxy-5β-cholest-24-enoyl-CoA

3'-dephospho-CoA

succinyl-CoA

2-methylacetoacetyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

2-methylbutanoyl-CoA

isobutanoyl-CoA

acetyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

(3S)-hydroxyadipyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-hydroxyisovaleryl-CoA

(E)-2-methylcrotonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

methylacrylyl-CoA

4-hydroxybenzoyl-CoA

malonyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

phytenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

phytanoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

decanoyl-CoA

octanoyl-CoA

lauroyl-CoA

7-hydroxylauroyl-CoA

3-oxoadipyl-CoA

3-oxooctanoyl-CoA

3-oxohexanoyl-CoA

3-oxodecanoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

(6Z,9Z,12Z,15Z,18Z)-3-oxotetracosapentaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z,21Z)-3-oxotetracosahexaenoyl-CoA

propanoyl-CoA

(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA

(Z)-15-tetracosenoyl-CoA

18-hydroxylinoleoyl-CoA

18-hydroxyoleoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxystearoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

stearoyl-CoA

myristoyl-CoA

palmitoyl-CoA

cis-vaccenoyl-CoA

palmitoleoyl-CoA

2-hydroxyphytanoyl-CoA

pristanoyl-CoA

tributyrin

1,2-dibutyrin

trans,octacis-decaprenylphospho-β-D-ribofuranose 5-phosphate

(25S)-26-hydroxycholest-4-en-3-one

(25S)-26-oxocholest-4-en-3-one

17-hydroxy-3-oxo-4-pregnane-20-carboxyl-CoA

3-oxo-4,17-pregnadiene-20-carboxyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

22-hydroxy-3-oxochol-4-en-24-oyl-CoA

3-oxochol-4,22-dien-24-oyl-CoA

3-oxochol-4-en-24-oyl-CoA

3-oxocholest-4,24-dien-26-oyl-CoA

cholest-4-en-3-one

5-α-pregnane-3,20-dione

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

5β-cholestane-3α,7α,12α-triol

5β-cholestane-3α,7α-diol

5-α-androstan-3α,17β-diol

ergosterol

lanosterol

cholesterol

cholest-5-en-3-one

campest-4-en-3β-ol

7α,12α-dihydroxy-5β-cholestan-3-one

7α-hydroxy-5β-cholestan-3-one

androst-4-ene-3,17-dione

5α-androstane-3,17-dione

deoxycholate

cholate

3-dehydrocholate

isoguanine

8-oxo-dGTP

8-oxo-GTP

cyclic-AMP

cyclic-GMP

dGMP

dAMP

dIDP

dITP

IDP

ITP

2'-deoxyguanosine

dGTP

dGDP

dATP

dADP

GMP

adenylo-succinate

5'-deoxyadenosine

hypoxanthine

pppGpp

GTP

ppGpp

GDP

2'-deoxyadenosine

2'-deoxyinosine

AMP

IMP

XMP

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

ATP

ADP

dTDP

dUDP

dCDP

CDP

UDP

dTMP

dUMP

dCMP

CMP

UMP

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CTP

5-hydroxy-CMP

UTP

CTP

dTTP

dUTP

dCTP

reduced β-nicotinamide D-ribonucleotide

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

5,6-dihydrouracil

5,6-dihydrothymine

CMP-3-deoxy-β-D-manno-octulosonate

UDP-α-D-glucose

dTDP-α-D-glucose

GDP-α-D-glucose

ADP-α-D-glucose

CDP-α-D-glucose

UDP-N-acetyl-α-D-muramate

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

GDP-α-D-mannuronate

GDP-α-D-mannose

5-fluorouracil

thymidine

2'-deoxycytidine

2'-deoxyuridine

cytidine

uridine

xanthosine

guanosine

inosine

adenosine

N¹-ethyladenine

N3-methylcytosine

N¹-methyladenine

preQ₁

thymine

uracil

cytosine

guanine

adenine

5-fluorocytosine

(R)-lipoate

coenzyme A

oxidized coenzyme F₄₂₀-0

MoO₂-molybdopterin cofactor

thio-molybdenum cofactor

(S)-1-pyrroline-5-carboxylate

precorrin-1

precorrin-3B

precorrin-6A

precorrin-6B

precorrin-7

precorrin-8x

precorrin-4

precorrin-5

precorrin-2

precorrin-3A

sirohydrochlorin

hydantoin

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

7,8-dihydroneopterin 3'-phosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropterin

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

reduced riboflavin

orotate

coumarin

actinorhodin intermediate

actinorhodin

salicylaldehyde

benzyl alcohol

6-amino-6-deoxyfutalosine

futalosine

dehypoxanthine futalosine

4-hydroxybenzoate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

urate

hydroquinone

menadiol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

vanillyl mandelate

amino-parathion

methyl parathion

benzaldehyde

indole

(indol-3-yl)acetaldehyde

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

4-aminophenol

4-methylphenol

2,3-dihydroxybenzoate

L-dopa

8'-(3,4-dihydroxy-5-alkenyl)phenyl-3-[9'E,11'E,13'Z-pentadecatrienyl]catechol

protocatechuate

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxymandelate

3,4-dihydroxyphenylacetate

catechol

4-methylcatechol

dimeric urushiol peroxide

3-[(8Z,11E,13Z)-pentadeca-8,11,13-trien-1-yl] )catechol

enterobactin

coumarinate

5-chloroprotocatechuate

salicylate

4-aminobenzoate

benzoate

diacetyl

acetone

(S)-acetoin

(R)-acetoin

6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone

3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone

dopaquinone

methylglyoxal

glycolaldehyde

butan-1-al

formaldehyde

1-octanal

acetaldehyde

(S)-lactaldehyde

L-glyceraldehyde

D-glyceraldehyde

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

β-D-ribopyranose

α-D-xylopyranose

β-D-allofuranose

β-D-allopyranose

aldehydo-D-mannose

β-D-mannopyranose

β-D-glucopyranose

α-D-glucopyranose

β-D-galactopyranose

α-D-galactopyranose

α-L-rhamnopyranose

β-L-rhamnopyranose

dodecanal

decanal

phytenal

glycerol

xylitol

D-mannitol

butan-1-ol

ethanol

methanol

phytol

1-dodecanol

1D-chiro-inositol

scyllo-inositol

myo-inositol

1-keto-D-chiro-inositol

3D-(3,5/4)-trihydroxycyclohexane-1,2-dione

scyllo-inosose

1D-myo-inositol 4-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 2-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 3-monophosphate

ethylene glycol

(S)-propane-1,2-diol

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

cellotetraose

β-D-cellobiose

maltotriose

XXXG xyloglucan oligosaccharide

isoprimeverose

XLXG xyloglucan oligosaccharide

XLLG xyloglucan oligosaccharide

XXLG xyloglucan oligosaccharide

raffinose

maltotetraose

stachyose

maltoheptaose

maltohexaose

maltopentaose

sucrose

α,α-trehalose

1-O-acetyl-α-maltose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

methyl β-D-glucoside 6-phosphate

salicin 6-phosphate

arbutin-6-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

N,N'-diacetylchitobiose 6'-phosphate

N-monoacetylchitobiose 6'-phosphate

α,α-trehalose 6-phosphate

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

4-phospho-D-erythronate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-galactose 1-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-rhamnulose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide

a mature peptidoglycan_(n) (meso-DAP containing)

a nascent peptidoglycan with L,D cross links (meso-diaminopimelate containing)

a mature peptidoglycan with L,D cross-links (meso-diaminopimelate containing)

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

a mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a mature peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

keto-D-fructose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-mannosamine

N-acetyl-α-D-glucosamine

N-acetyl-β-D-glucosamine

D-xylulose

keto-L-rhamnulose

β-D-fructofuranose

4-deoxy-L-threo-hex-4-enopyranuronate

D-mannonate

L-gulonate

D-gluconate

L-idonate

trans,octacis-decaprenyl phosphate

(8S,9S,10S)-8,10-dimethyl-1-octalin

(-)-geosmin

(1E,4S,5E,7R)-germacra-1(10),5-dien-11-ol

geranyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-undecaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-octaprenyl diphosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-octaprenyl-4-hydroxybenzoate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

trehalose-cis-keto-mono-mycolate

6-O-α-mycolyl-trehalose 6-phosphate

α, α'-trehalose 6-α-mycolate

6-O-trans-keto-mycolyl-trehalose 6-phosphate

trehalose-trans-keto-mono-mycolate

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

trehalose-cis-methoxy-mono-mycolate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

trehalose-trans-methoxy-mono-mycolate

18-hydroxyoleate

16-hydroxypalmitate

18-hydroxystearate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-myristoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-myristoyl phosphatidate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

dioleoyl phosphatidate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

5-deoxy-dihydrokalafungin

(S)-DNPA

2-((1R,3S),-1',9'-dihydroxy-1'-methyl-10'-oxo-3',4',5',10'-tetrahydro-1H-benzo[g]isochromen-3'-yl)acetate

4-(3'-acetyl-5'-hydroxy-4'-oxo-1',4'-dihydronapthalen-2'-yl)-3-oxobutanoate

(S)-4-(3'-acetyl-5'-hydroxy-4'-oxo-1',4'-dihydronapthalen-2'-yl)-3-hydroxybutanoate

phlorisovalerophenone

leucodopachrome

deoxyhumulone

deoxycohumulone

4-prenylphlorisovalerophenone

dihydrokalafungin

6-aminopenicillanate

isopenicillin N

penicillin G

3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(cysteinyl)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

allantoate

(S)-(+)-allantoin

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

glyoxylate

2-oxobutanoate

2-oxoglutarate

pyruvate

(3E)-2-oxohex-3-enedioate

3-[(1-carboxyvinyl)oxy]benzoate

chorismate

L-aspartate

succinate

fumarate

(S)-malate

D-glucarate

α,ω-9Z-octadecenedioate

3-(carbamoylamino)-2-methylpropanoate

cis-aconitate

trans-aconitate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

3-oxoadipate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

gentisate

7-hydroxylaurate

(R)-3-hydroxybutanoate

(S)-lactate

(R)-lactate

decanoate

octanoate

laurate

propanoate

butanoate

oleate

(9Z,15Z)-12,13-epoxy-octadeca-9,15-dienoate

(9Z,15Z)-12,13-dihydroxyoctadeca-9,15-dienoate

(12Z,15Z)-9,10-epoxyoctadeca-12,15-dienoate

(12Z,15Z)-9,10-dihydroxyoctadeca-12,15-dienoate

(9Z,12Z)-15,16-epoxyoctadeca-9,12-dienoate

(9Z,12Z)-15,16-dihydroxyoctadeca-9,12-dienoate

α-linolenate

linoleate

(15Z)-tetracosenoate

phytenate

palmitate

stearate

(2E)-hexadecenoate

leukotriene-E4

leukotriene-D4

5-deoxy-D-glucuronate

(R)-pantoate

acetate

L-α-amino-ε-keto-pimelate

L-2-aminoadipate

carbamate

L-serine

L-cysteine

L-asparagine

L-tyrosine

L-threonine

L-glutamine

glycine

L-arginine

L-lysine

L-histidine

L-glutamate

creatine

β-alanine

(S)-3-amino-2-methylpropanoate

(R)-3-amino-2-methylpropanoate

L-leucine

L-proline

L-alanine

D-glutamate

D-ornithine

D-proline

D-alanine

L-tryptophan

L-phenylalanine

L-methionine

L-isoglutamine

L,L-diaminopimelate

L-aspartyl-4-phosphate

L-isoleucine

L-2,4-diaminobutanoate

L-ornithine

L-cystathionine

L-valine

formyl-L-isoglutamine

N-formyl-L-glutamate

N-formimino-L-glutamate

N-acetyl-L-ornithine

N⁶,N⁶-dimethyl-L-arginine

N-carbamoyl-L-aspartate

L-saccharopine

L-2-amino-3-oxobutanoate

S-sulfanyl-L-cysteine

seleno-L-homocysteine

N-carbamoylglycine

N-acetyl-L-methionine

N-acetyl-L-glutamate

sarcosine

3-phospho-L-serine

trans-4-hydroxy-L-proline

L-citrulline

L-canaline

1-aminocyclopropane-1-carboxylate

L-cystine

L-glutamate-5-semialdehyde

L-homocysteine

hypoglycin A

L-homoserine

L-aspartate 4-semialdehyde

O-phospho-L-homoserine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

hypoglycin B

(S)-ureidoglycine

ω-saturated C55 dolichol phosphate