an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

2-carboxy-L-threo-pentonate

cyclic- 3,4-O-oxalyl-L-threonate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-hydroxyindole thiazolidine carboxylate

cyclic-2,3-O-oxalyl-L-threonate

2-carboxy-L-xylonolactone

4-oxoglutaramate

octadecanal

selenodiglutathione

glutathioselenol

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

S-ribosyl-L-homocysteine

autoinducer 2

1,4-dihydroxy-2-naphthoate

(4S,5S)-4,5-dihydroxy-2,6-dioxohexanoate

2-amino-3-carboxymuconate-6-semialdehyde

5-oxo-L-proline

2-keto-D-gluconate

2-dehydro-6-phospho-D-gluconate

2-dehydro-3-deoxy-D-galactonate 6-phosphate

3-keto-L-gulonate 6-phosphate

dehydroascorbate (bicyclic form)

4-amino-2-methyl-5-pyrimidinemethanol

3'-phosphoadenylyl-sulfate

5-amino-6-(5-phospho-D-ribitylamino)uracil

N-succinyl-L,L-2,6-diaminopimelate

L-dehydro-ascorbate

(R)-4'-phosphopantothenate

dialurate

(R)-1-amino-2-propanol O-2-phosphate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

7-epicholate

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

(R)-mevalonate diphosphate

(R)-5-phosphomevalonate

hydroxypyruvate

acetyl phosphate

α-D-glucopyranosyl-diphosphoundecaprenol

itaconate

2-methyl-4-chlorophenol

N-(5-phosphoribosyl)-anthranilate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

(indol-3-yl)acetamide

propionamide

(S)-5-hydroxyisourate

3-oxopropanoate

3-ureidopropanoate

3-mercaptopyruvate

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

5-androstene-3,17-dione

pregn-5-ene-3,20-dione-17-ol

pregn-5-ene-3,20-dione

3-methylbenzyl alcohol

3-methylbenzaldehyde

4-methylbenzyl alcohol

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

3-deoxy-D-glycero-2,5-hexodiulosonate

lipid IV_A

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

7,8-diaminopelargonate

1-piperideine 6-carboxylate

(R)-pantothenate

pimeloyl-CoA

8-amino-7-oxononanoate

coenzyme B

methanophenazine

CoB-CoM heterodisulfide

dihydromethanophenazine

N-succinyl-2-amino-6-ketopimelate

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

4-imidazolone-5-propanoate

urocanate

dihydrolipoamide

S-acetyldihydrolipoamide

2-(α-hydroxyethyl)thiamine diphosphate

indole-3-ethanol

(2-hydroxyphenyl)acetate

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

(S)-2-amino-6-oxohexanoate

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

(S)-4-hydroxy-2-oxopentanoate

5-dehydro-4-deoxy-D-glucarate

(R)-2,3-dihydroxy-3-methylpentanoate

imidazole acetaldehyde

4-imidazoleacetate

5-hydroxyindole acetate

3,4-dihydroxyphenylacetaldehyde

prop-2-ynal

propynoate

D-glucurono-6,3-lactone

dimethylsulfoniopropanoate

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine 4-sulfate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

glutathionylspermidine

cyanate

isoquinoline

isoquinolin-2(1H)-one

2-iminoacetate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

(5S)-5-benzyl-hydantoin

(5R)-5-benzyl-hydantoin

2-phosphoglycolate

3-keto-L-gulonate

2,3-dioxo-L-gulonate

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

indole-3-glycol

indole-3-glycol aldehyde

isobutanol

3-methylbutanol

3-methylbutanal

2-methylbutanol

2-methylbutanal

2-phenylethanol

dethiobiotin

2-dehydro-3-deoxy-D-galactonate

L-gulono-1,4-lactone

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

N⁴-(β-N-acetyl-D-glucosaminyl)-L-asparagine

N-acetyl-β-glucosaminylamine

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

cis-stilbene oxide

(1R,2R)-1,2-diphenylethane-1,2-diol

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

2-dehydropantoate

N-carbamoylputrescine

luteolin 7-O-[β-D-glucosyluronate-(1,2)-β-D-glucosiduronate]-4'-O-β-D-glucosiduronate

luteolin 7-O-β-D-diglucuronide

luteolin 7-O-β-D-glucuronide

α-D-glucosamine 1-phosphate

homogentisate

4-maleyl-acetoacetate

3-deoxy-D-manno-octulosonate 8-phosphate

aminoacetone

histidinal

histidinol

L-histidinol phosphate

2-keto-L-gulonate

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

3-dehydroquinate

(S)-2,3,4,5-tetrahydrodipicolinate

prephenate

N-acetyl-D-muramate 6-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

shikimate 3-phosphate

orotidine 5'-phosphate

3-hydroxyanthranilate

anthranilate

5-amino-6-(5-phospho-D-ribosylamino)uracil

β-D-ribosylnicotinate

2-maleylacetate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

muconolactone

(+)-muconolactone

cis,cis-muconate

shikimate

3-dehydroshikimate

ADP-D-glycero-β-D-manno-heptose

ADP-L-glycero-β-D-manno-heptose

2-C-methyl-D-erythritol 4-phosphate

(1R,2R)-cyclohexa-3,5-diene-1,2-diol

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

2-aminomalonate semialdehyde

(R)-4'-phosphopantothenoyl-L-cysteine

xanthine

H₂

melatonin

lipid X

lipid A disaccharide (E. coli)

2-dehydro-3-deoxy-D-gluconate 6-phosphate

ammonia

2-dehydro-3-deoxy-D-gluconate

3-keto-β-D-galactose

(R)-mevalonate

citrate

salicyl alcohol

methylsalicylate

(S)-dihydroorotate

4-amino-4-deoxychorismate

2-oleoylglycerol

N-acetyl-L-glutamate 5-semialdehyde

O-ureido-L-homoserine

N-acetylglutamyl-phosphate

L-arginino-succinate

canavaninosuccinate

porphobilinogen

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

carbamoyl phosphate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

tryptamine

(S)-3-methyl-2-oxopentanoate

4-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

carbon monoxide

oxaloacetate

enol-phenylpyruvate

(E)-2-benzylidenesuccinyl-CoA

(E)-4-coumaroyl-CoA

2,3-didehydroadipyl-CoA

4-amino-4-deoxy-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

thiamine phosphate

thiamine diphosphate

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

nicotinate adenine dinucleotide

3-deoxy-α-D-manno-2-octulosonate

5-amino-6-(D-ribitylamino)uracil

7,8-didemethyl-8-hydroxy-5-deazariboflavin

oxalate

(7R)-7-(4-carboxybutanamido)cephalosporanate

glutarate

6-phospho D-glucono-1,5-lactone

D-gluconate 6-phosphate

(L-threonylcarbamoyl)adenylate

4-fumaryl-acetoacetate

acetoacetate

4'-phosphopantetheine

propane-1,3-diamine

sym-homospermidine

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

4-acetamidobutanal

4-acetamidobutanoate

glutathione disulfide

L-canavanine

formamide

phosphoenolpyruvate

carbonic acid

hydrogen peroxide

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

(S)-ureidoglycolate

urea

chloramphenicol

2-oxoglutaramate

isopentenyl diphosphate

prenyl diphosphate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

4-pyridoxolactone

α-ribazole

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

L-selenocystathionine

glycerone phosphate

coproporphyrinogen III

preuroporphyrinogen

β-nicotinate D-ribonucleotide

quinolinate

oxalosuccinate

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

N-Formyl-L-kynurenine

4-phosphooxy-L-threonine

3-amino-1-hydroxyacetone 1-phosphate

CO₂

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-phosphooxypyruvate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

hydrogen selenide

O-acetyl-L-serine

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

squalene

presqualene diphosphate

prephytoene diphosphate

ethanolamine

2-methyl-1,4-benzoquinone

methyl-1,4-benzoquinol

selenophosphate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

4-methylumbelliferyl glucoside

4-hydroxybenzaldehyde

scopolin

cis-coumarinic acid-β-D-glucoside

γ-L-glutamyl 5-phosphate

nigerose

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

benzoylsuccinyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

tartronate semialdehyde

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

DNA without lesion

H₂O

(2E,6E)-farnesol

(2E,6E)-farnesyl diphosphate

pristanate

DNA with lesion

phenylacetate

ethylphosphate

phosphonoacetaldehyde

adenosylcobalamin

cob(I)alamin

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

3,8-divinyl protochlorophyllide a

magnesium-protoporphyrin IX 13-monomethyl ester

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

chlorophyllide a

protochlorophyllide a

cobalt-factor III

cobalt-sirohydrochlorin

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-5A

adenosylcobyrate

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

Mg-protoporphyrin

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

adenosylcobinamide

adenosyl-cobinamide phosphate

cobalt-precorrin-3

cobalt-precorrin-4

protoheme

N₂

hydrogen cyanide

protoporphyrin IX

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrinogen IX

uroporphyrinogen-III

(Z,Z)-biliverdin-IX α

siroheme

hydrogen sulfide

oxygen

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

(R)-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

2-iminosuccinate

2-iminobutanoate

2-iminopropanoate

N-acetyl-D-mannosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

1-oleoyl-2-lyso-glycerone phosphate

cyanophycin primer-L-aspartate

cyanophycin primer

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

(R)-citramalate

(S)-methylmalonate-semialdehyde

5,10-methenyltetrahydrofolate mono-L-glutamate

3-(all-trans-octaprenyl)benzene-1,2-diol

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

superoxide

hydroxyl radical

monodehydroascorbate radical

nitric oxide

chloramphenicol 3-acetate

N-acetyl-β-neuraminate

S-(hydroxymethyl)glutathione

dimethyl sulfide

3-dimethylsulfoniopropionaldehyde

methionol

3-(methylsulfanyl)propanal

glutathione

thiocyanate

S-sulfanylglutathione

5-(2-hydroxyethyl)-4-methylthiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

coenzyme M

taurine

L-cysteate

3-sulfopyruvate

(2R)-3-sulfolactate

N-acetyl-D-galactosamine 6-O-sulfate

(2R)-phospho-3-sulfolactate

trimethyl sulfonium

sulfate

sulfite

selenite

selenate

selenide

thiosulfate

OH^-

nitrite

nitrate

hydrogensulfite

hydrogencarbonate

molybdate

phosphonate

phosphate

triphosphate

diphosphate

Fe³⁺

H⁺

ammonium

K⁺

Fe²⁺

Mg²⁺

Co²⁺

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

agmatine

spermidine

putrescine

2-phenylethylamine

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

N-acetyl-serotonin

serotonin

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

fluoroacetaldehyde

fluoroacetate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

2,4-dichlorophenol

3,5-dichlorocatechol

5-chloro-3-methylcatechol

3-chlorobenzyl alcohol

3-chlorobenzaldehyde

allantoate

acetamide

isopenicillin N

penicillin N

(7R)-7 aminocephalosporanate

(S)-(+)-allantoin

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

nicotinamide

heptadecane

cholest-4-en-3-one

(25S)-26-hydroxycholest-4-en-3-one

(25S)-26-oxocholest-4-en-3-one

(25S)-3-oxocholest-4-en-26-oate

17-hydroxy-3-oxo-4-pregnane-20-carboxyl-CoA

3-oxo-4,17-pregnadiene-20-carboxyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

22-hydroxy-3-oxochol-4-en-24-oyl-CoA

3-oxochol-4,22-dien-24-oyl-CoA

3-oxochol-4-en-24-oyl-CoA

3-oxocholest-4,24-dien-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oyl-CoA

3α,7α,12β-trihydroxy-5β-cholan-24-oate

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

pregnenolone

campest-4-en-3-one

progesterone

testosterone

campest-4-en-3β-ol

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

5α-androstane-3,17-dione

cholate

glycocholate

3-dehydrocholate

isocholate

3-β-hydroxyandrost-5-en-17-one

androsterone

cholesterol

cholest-5-en-3-one

17-α-hydroxypregnenolone

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

2-methylbutanoyl-CoA

phenylacetyl-CoA

isovaleryl-CoA

itaconyl-CoA

3-methylcrotonyl-CoA

3-methylglutaconyl-CoA

3'-dephospho-CoA

formyl-CoA

oxalyl-CoA

4-hydroxybenzoyl-CoA

(E)-glutaconyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

α-linolenoyl-CoA

malonyl-CoA

methylacrylyl-CoA

(2E,5Z)-tetradecenoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-hydroxyisovaleryl-CoA

(E)-2-methylcrotonoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

2-trans-nonenoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

linoleoyl-CoA

γ-linolenoyl-CoA

succinyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3R)-hydroxy-5-trans-dodecenoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3S)-hydroxyadipyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E)-octadec-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

phytanoyl-CoA

(S)-malyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(Z)-15-tetracosenoyl-CoA

cerotoyl-CoA

2-carboxy-cerotoyl-CoA

butanoyl-CoA

propanoyl-CoA

decanoyl-CoA

octanoyl-CoA

palmitoyl-CoA

2-hydroxyphytanoyl-CoA

pristanoyl-CoA

hexadecanedioyl-CoA

3-oxoadipyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

3-oxooctanoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-palmitoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

all-trans-retinyl palmitate

cis-dienelactone

trans-dienelactone

L-homoserine lactone

PAI-1

HAI-1

PAI-1-2

VAI-1

VAI-1-2

AAI-1

D-glucono-1,5-lactone

FMNH₂

FMN

FAD

FADH₂

(S)-NADHX

(R)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

ubiquinol-8

menaquinol-8

menaquinol-7

menaquinol-9

menaquinol-6

menaquinol-10

menaquinol-11

menaquinol-12

menaquinol-13

demethylmenaquinol-8

demethylmenaquinol-7

demethylmenaquinol-9

demethylmenaquinol-6

demethylmenaquinol-10

demethylmenaquinol-11

demethylmenaquinol-12

demethylmenaquinol-13

3-demethylubiquinol-8

4-methylphenol

L-homocysteine

molybdopterin

coenzyme A

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

L-ascorbate

riboflavin

nicotinate

pyridoxamine

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxine

pyridoxal

all-trans-retinol

(S)-1-pyrroline-5-carboxylate

precorrin-2

precorrin-1

sirohydrochlorin

hydantoin

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

molybdopterin adenine dinucleotide

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

cyclic pyranopterin phosphate

7,8-dihydropterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin 2',3'-cyclic phosphate

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

guanine

adenine

2'-deoxyinosine

2'-deoxyadenosine

2'-deoxyguanosine

adenosine

xanthosine

inosine

guanosine

hypoxanthine

dAMP

dGMP

dATP

dITP

dGTP

dIDP

dADP

dGDP

IDP

GDP

ADP

XMP

IMP

GMP

AMP

ITP

GTP

ATP

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

5,6-dihydrouracil

5,6-dihydrothymine

dCTP

UTP

dCMP

dCDP

dUDP

orotate

uridine 3'-monophosphate

cytidine-3'-monophosphate

CDP

dTMP

dTDP

CTP

dTTP

dUTP

dUMP

uracil

UDP

UDP-β-L-iduronate

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-glucose

UDP-α-D-galactose

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-glucuronate

UDP-α-D-galacturonate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

UDP-α-D-xylose

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

dTDP-α-D-glucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

uridine

cytidine

2'-deoxycytidine

thymidine

2'-deoxyuridine

thymine

CMP

UMP

isoguanine

preQ₁

2',4,4',6'-tetrahydroxychalcone

luteolin

coumarin

scopoletin

4-methylumbelliferone

preQ₀

(indole-3-yl)acetonitrile

taxiphyllin

linustatin

neolinustatin

linamarin

lotaustralin

2-hydroxy-2-methylpropanenitrile

(2R)-2-hydroxy-2-methylbutanenitrile

salicylaldehyde

benzyl alcohol

4-tyrosol

futalosine

dehypoxanthine futalosine

urate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

4-hydroxybenzoate

2-[(1R,6S)-1,6-dihydroxycyclohexa-2,4-dien-1-yl]acetyl-coA

vanillyl mandelate

3-methoxy-4-hydroxyphenylglycol

benzaldehyde

4-methylbenzaldehyde

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

indole

(indol-3-yl)acetaldehyde

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

protocatechuate

3,4-dihydroxymandelate

3,4-dihydroxyphenylacetate

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

catechol

L-dopa

dopamine

coumarinate

salicylate

4-aminobenzoate

benzoate

4-methylbenzoate

3-oxo-dodecanoate

3-oxooctanoate

L-α-amino-ε-keto-pimelate

L-2-aminoadipate

carbamate

L-kynurenine

L-serine

β-alanine

(R)-3-amino-2-methylpropanoate

L-proline

L-leucine

L-alanine

L-glutamine

glycine

D-glutamate

L-glutamate

L-lysine

L-arginine

L-histidine

L-aspartate

L-tyrosine

L-threonine

L-asparagine

L-cysteine

L-phenylalanine

L-tryptophan

D-proline

D-cysteine

D-aspartate

D-alanine

L-saccharopine

L-aspartyl-4-phosphate

L-2-amino-3-oxobutanoate

seleno-L-homocysteine

S-sulfanyl-L-cysteine

N-carbamoylglycine

formyl-L-isoglutamine

N-formimino-L-glutamate

N-(3-oxooctanoyl)-L-homoserine

N-(3-hydroxybutanoyl)-L-homoserine

N-(3-oxododecanoyl)-L-homoserine

N-(butyryl)-L-homoserine

N-(3-oxohexanoyl)-L-homoserine

N-(octanoyl)-L-homoserine

N-acetyl-L-ornithine

N-acetyl-L-glutamate

N⁶-hydroxy-L-lysine

N-carbamoyl-L-aspartate

3-hydroxy-L-kynurenine

trans-4-hydroxy-L-proline

5-hydroxy-L-tryptophan

O-acetyl-L-homoserine

3-phospho-L-serine

L-citrulline

L-isoleucine

L-valine

L-4-hydroxyglutamate semialdehyde

O-succinyl-L-homoserine

hypoglycin A

O-phospho-L-homoserine

L-aspartate 4-semialdehyde

L-ornithine

L-canaline

S-sulfo-L-cysteine

L-cystine

L-homoserine

L-glutamate-5-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-selenocysteine

L-methionine

L-isoglutamine

L-2,4-diaminobutanoate

L,L-diaminopimelate

L-cystathionine

chorismate

crocetin

(3E)-2-oxohex-3-enedioate

fumarate

succinate

(S)-malate

D-glucarate

3-(carbamoylamino)-2-methylpropanoate

3-carboxy-cis,cis-muconate

cis-aconitate

D-threo-isocitrate

(R)-3-hydroxybutanoate

(S)-lactate

(R)-lactate

pyruvate

acetate

formate

propanoate

butanoate

decanoate

octanoate

(2E,6E)-farnesoate

3-oxoadipate

3-oxohexanoate

(15Z)-tetracosenoate

oleate

(3E,5Z)-tetradecadienoate

apo-4'-lycopenoate

γ-linolenate

linoleate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

phytenate

8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-enyl}cyclopentyl]octanoate

dinor-12-oxo-phytodienoate

palmitate

D-gluconate

(R)-pantoate

D-mannonate

D-tagaturonate

4-deoxy-L-threo-hex-4-enopyranuronate

aldehydo-D-glucuronate

β-D-glucuronate

aldehydo-D-galacturonate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

glyoxylate

2-oxoglutarate

2-oxobutanoate

methylglyoxal

diacetyl

6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone

3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone

(R)-acetoin

glycolaldehyde

(2E,6E)-farnesal

crocetin dialdehyde

butan-1-al

formaldehyde

1-propanal

isobutanal

1-octanal

acetaldehyde

(S)-lactaldehyde

phytenal

L-glyceraldehyde

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

aldehydo-D-mannose

β-D-mannopyranose

α-D-galactopyranose

β-D-galactopyranose

L-sorbosone

β-L-rhamnopyranose

α-L-rhamnopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

aldehydo-L-arabinose

butan-1-ol

propan-1-ol

ethanol

methanol

phytol

glycerol

L-arabinitol

D-mannitol

galactitol

L-iditol

D-sorbitol

3-dehydrosphinganine

myo-inositol

scyllo-inosose

1-amino-1-deoxy-scyllo-inositol

1D-myo-inositol 3-monophosphate

1D-myo-inositol 4-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 2-monophosphate

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-oleoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

geranyl diphosphate

all-trans-undecaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-octaprenyl diphosphate

geranylgeranyl diphosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

apo-4'-lycopenal

all-trans phytofluene

15-cis-phytoene

all-trans-phytoene

3-oxo-24-ethyl-26-al-cholest-4-ene

3-oxo-24-ethyl-cholest-4-en-26-oate

3,24-dioxo-cholest-4-en-26-oate

3-oxo-24-(isopropanoyl)-cholest-4,24-dien-26-oyl-CoA

3-oxo-24-ethyl-cholest-4,24-dien-26-oyl-CoA

3-oxo-24-ethyl-cholest-4-en-26-oyl-CoA

3-oxo-24-ethyl-26-hydroxy-cholest-4-ene

3-oxo-24-ethyl-cholest-4-ene

sitosterol

3-oxo-24-ethyl-cholest-5-ene

phytyl diphosphate

3-octaprenyl-4-hydroxybenzoate

4'-α-L-Ara4N-α-Kdo-(2→4)-α-Kdo-(2→6)-[P4'-α-L-ara4N]-lipid A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

betalamate

miraxanthin V

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

XXLG xyloglucan oligosaccharide

XLXG xyloglucan oligosaccharide

XLLG xyloglucan oligosaccharide

XXXG xyloglucan oligosaccharide

selaginose

maltotriose

raffinose

maltotetraose

stachyose

maltopentaose

maltoheptaose

maltohexaose

α-maltose

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl--D-galactosamine 6-sulfate

allolactose

melibiose

sucrose

α,α-trehalose

α-lactose

β-D-cellobiose

keto-L-sorbose

keto-D-fructose

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-mannosamine

N-acetyl-α-D-mannosamine

N-acetyl-β-D-galactosamine

N-acetyl-β-D-glucosamine

L-sorbosone 1,4-lactone

L-sorbosone 2,6-lactone

β-L-fucopyranose

α-L-fucopyranose

β-D-fructofuranose

L-fuculose

D-xylulose

D-ribulose

L-ribulose

3'-ketolactose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (S. aureus)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (E. faeciums)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-ribulose-1,5-bisphosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

sucrose 6^F-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

GDP-α-D-glucose

ADP-α-D-glucose

GDP-α-D-mannose

GDP-4-dehydro-α-D-rhamnose

GDP-β-L-fucose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

D-sedoheptulose 1,7-bisphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

4-phospho-D-erythronate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

L-xylulose 5-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-fuculose 1-phosphate

L-rhamnulose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

D-galactonate

L-gulonate

D-altronate

adenosine 2',3'-cyclic monophosphate

guanosine 2',3'-cyclic monophosphate

8-oxo-GTP

8-oxo-dGTP

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

guanosine 3'-monophosphate

adenosine 3'-monophosphate

adenylo-succinate

ppGpp

pppGpp

cyclic-AMP

cyclic-GMP

5'-deoxyadenosine

5-hydroxy-CTP

2-hydroxy-dATP

reduced β-nicotinamide D-ribonucleotide

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

hypoglycin B