an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

L-dehydro-ascorbate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-hydroxyindole thiazolidine carboxylate

bisorganyltrisulfane

α-D-galacturonate 1-phosphate

octadecanal

selenodiglutathione

glutathioselenol

N-(5-phosphoribosyl)-anthranilate

7-epicholate

N⁵-carboxyaminoimidazole ribonucleotide

(S)-ureidoglycolate

4-amino-2-methyl-5-pyrimidinemethanol

3'-ketosucrose

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2-amino-3-carboxymuconate-6-semialdehyde

carbon monoxide

2-keto-L-gulonate

acetoacetate

5-oxo-L-proline

L-xylo-hex-3-ulono-1,4-lactone

L-gulono-1,4-lactone

theophylline

1,3-dimethylurate

3-methylxanthine

3-methylurate

1-methylxanthine

1-methylurate

3-(3-hydroxyphenyl)propanoate

3-ureidopropanoate

dialurate

(R)-1-amino-2-propanol O-2-phosphate

5-amino-6-(5-phospho-D-ribitylamino)uracil

γ-butyrobetaine

(2E)-2-hydroxypenta-2,4-dienoate

(3E)-2-oxopent-3-enoate

2-oxopent-4-enoate

(S)-4-hydroxy-2-oxopentanoate

S-formylglutathione

N-(2,3-dihydroxybenzoyl)-L-serine dimer

N-(2,3-dihydroxybenzoyl)-L-serine

N-(2,3-dihydroxybenzoyl)-L-serine trimer

2-(α-hydroxyethyl)thiamine diphosphate

2-methyl-1,4-benzoquinone

methyl-1,4-benzoquinol

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

GMP-N-ε-(N-α-acetyl lysine methyl ester) 5'-phosphoramidate

meso-tartrate

2-hydroxy-3-oxosuccinate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

2-deoxy-D-glucose 6-phosphate

2-deoxy-D-glucose

dithioerythritol

4,5-cis-dihydroxy-1,2-dithiacyclohexane

N-ethylmaleimide

N-ethylsuccinimide

3-hydroxypropanoate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

vanillin

N,N-dimethyl-1,4-phenylenediamine

4-(γ-L-glutamylamino)butanal

4-(γ-L-glutamylamino)butanoate

γ-glutamyl-L-putrescine

(S)-5-hydroxyisourate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

dimethyl sulfoxide

α-ribazole

pseudouridine

pseudouridine 5'-phosphate

3-hydroxy-5-oxohexanoate

3-hydroxy-5- oxohexanoyl-CoA

2-dehydro-3-deoxy-L-rhamnonate

L-rhamnono-1,4-lactone

L-rhamnonate

4-deoxy-4-formamido-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

UDP-4-deoxy-4-formamido-β-L-arabinopyranose

4-amino-4-deoxy-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

phthalate

2,2'-disulfonyl azobenzene

3-[(4-amino-6-chloro-1,3,5-triazin-2-yl)amino]benzenesulfonate

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

4-acetamidobutanal

4-acetamidobutanoate

3-phenylpropanoate

3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate

(2E)-3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)prop-2-enoate

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

D-phenylhydantoin

N-carbamoyl-D-phenylglycine

indole-3-ethanol

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

indole-3-glycol

indole-3-glycol aldehyde

isobutanol

3-methylbutanol

3-methylbutanal

2-methylbutanol

2-methylbutanal

2-phenylethanol

1-deoxy-L-glycero-tetrulose 4-phosphate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

5-dehydro-4-deoxy-D-glucarate

N⁶-(D-psicosyl)-L-lysine

2-phosphoglycolate

glycolate

nigerose

2-dehydro-3-deoxy-D-galactonate

4-hydroxy-2-nonenal

trimethylamine N-oxide

trimethylamine

core oligosaccharide-lipid A (E. coli K-12 core type)

5'-phosphoguanylyl(3'→5')guanosine

(enterobacterial common antigen)-undecaprenyl diphosphate

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

N-acetyl-β-D-mannosaminuronyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol

1,4-dihydroxy-2-naphthoate

2-iminoacetate

2-oleoylglycerol

DNA without lesion

α-D-ribose 1,5-bisphosphate

α-D-ribose-1-methylphosphonate 5-phosphate

5-phospho-α-D-ribose 1,2-cyclic phosphate

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

(indol-3-yl)acetamide

propionamide

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(4S)-4-hydroxy-2-oxoheptanedioate

2-hydroxy-5-carboxymethylmuconate semialdehyde

5-carboxymethyl-2-hydroxymuconate

(lipoyl)adenylate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

(2S)-2-isopropylmalate

quinolinate

dihydrolipoamide

S-acetyldihydrolipoamide

S-adenosyl 3-(methylsulfanyl)propylamine

S-methyl-5'-thioadenosine

carbonic acid

(S)-2,3,4,5-tetrahydrodipicolinate

lipid X

γ-L-glutamyl 5-phosphate

3-keto-β-D-galactose

3-(2,3-dihydroxyphenyl)propanoate

(2Z,4E)-2-hydroxy-6-oxonona-2,4-diene-1,9-dioate

2-aminoacetaldehyde

5-aminolevulinate

5-amino-6-(5-phospho-D-ribosylamino)uracil

thiamine diphosphate

2-dehydropantoate

(L-aspartyl)adenylate

(2,3-dihydroxybenzoyl)adenylate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

pimeloyl-CoA

8-amino-7-oxononanoate

4-phosphooxy-L-threonine

3-phosphooxypyruvate

lipid A disaccharide (E. coli)

lipid IV_A

(S)-dihydroorotate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

oxalosuccinate

6-phospho D-glucono-1,5-lactone

2-dehydro-3-deoxy-D-gluconate 6-phosphate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

N²-succinyl-L-arginine

N²-succinyl-L-ornithine

nicotinate adenine dinucleotide

L-quinate

5-amino-6-(D-ribitylamino)uracil

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

7,8-diaminopelargonate

dethiobiotin

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

citrate

anthranilate

(S)-4-amino-5-oxopentanoate

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

histidinal

histidinol

L-histidinol phosphate

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

3-demethylubiquinol-6

2-succinylbenzoate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

1,4-dihydroxy-2-naphthoyl-CoA

isochorismate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

acetyl phosphate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

5-enolpyruvoyl-shikimate 3-phosphate

oxalate

hydrogen selenide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

3-mercaptopyruvate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

prephenate

3-oxopropanoate

4-aminobutanoate

succinate semialdehyde

S-ribosyl-L-homocysteine

autoinducer 2

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2-C-methyl-D-erythritol 4-phosphate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

adenosine 3',5'-bisphosphate

3'-phosphoadenylyl-sulfate

3-deoxy-D-glycero-2,5-hexodiulosonate

isopentenyl diphosphate

urea

glutathionylspermidine

H₂

L-selenocystathionine

2-keto-D-gluconate

2,5-didehydro-D-gluconate

L-tartrate

1-pyrroline

propanoyl phosphate

tartronate semialdehyde

O-ureido-L-homoserine

3-deoxy-D-manno-octulosonate 8-phosphate

3-deoxy-α-D-manno-2-octulosonate

3-dehydroshikimate

N-succinyl-L,L-2,6-diaminopimelate

N-succinyl-2-amino-6-ketopimelate

4-amino-4-deoxychorismate

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

shikimate

shikimate 3-phosphate

methylsalicylate

salicyl alcohol

ethanolamine

glutathione disulfide

2-dehydro-3-deoxy-D-galactonate 6-phosphate

orotidine 5'-phosphate

(R)-4'-phosphopantothenoyl-L-cysteine

4'-phosphopantetheine

ADP-D-glycero-β-D-manno-heptose

ADP-L-glycero-β-D-manno-heptose

aminoacetone

O-acetyl-L-serine

selenophosphate

hydroxypyruvate

α-D-glucosamine 1-phosphate

4-methyl-2-oxopentanoate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

porphobilinogen

preuroporphyrinogen

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

hydrogen peroxide

N-acetyl-D-muramate 6-phosphate

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

dihydroxyacetone

glycerone phosphate

2-amino-2-deoxy-D-gluconate 6-phosphate

2-O-(6-phospho-α-D-mannosyl)-D-glycerate

oxaloacetate

phosphoenolpyruvate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

canavaninosuccinate

L-canavanine

L-arginino-succinate

(R)-pantothenate

(R)-4'-phosphopantothenate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

coproporphyrinogen III

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

enol-phenylpyruvate

thiamine phosphate

ammonia

prenyl diphosphate

3-keto-L-gulonate 6-phosphate

CO₂

carbamoyl phosphate

5-dehydro-D-gluconate

D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate

β-nicotinate D-ribonucleotide

β-D-ribosylnicotinate

xanthine

H₂O

(2E,6E)-farnesyl diphosphate

pristanate

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

ethylphosphate

adenosylcobalamin

cob(I)alamin

cob(II)yrinate c-monoamide

cobalt-factor III

cobalt-precorrin-3

cobalt-sirohydrochlorin

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-5A

cobyrinate

adenosylcobyrate

cob(II)yrinate a,c-diamide

adenosylcobalamin 5'-phosphate

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

adenosyl-cobinamide phosphate

adenosylcobinamide-GDP

protoheme

N₂

hydrogen cyanide

protoporphyrinogen IX

protoporphyrin IX

uroporphyrinogen-III

uroporphyrinogen-I

coproporphyrinogen I

siroheme

S⁰

hydrogen sulfide

oxygen

sn-glycerol 3-phosphate

2,3-diphospho-D-glycerate

2-O-(α-D-mannosyl)-3-phospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

2-O-(α-D-mannosyl)-D-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

4-dimethylaminophenylazobenzene

Reactive Blue 5

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

N-acetyl-D-mannosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

1-oleoyl-2-lyso-glycerone phosphate

dTDP-4-amino-4,6-dideoxy-α-D-galactose

5,10-methenyltetrahydrofolate mono-L-glutamate

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

(S)-2-hydroxyglutarate

superoxide

monodehydroascorbate radical

hydroxyl radical

nitric oxide

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

N-acetyl-β-neuraminate

S-(hydroxymethyl)glutathione

dimethyl sulfide

methionol

3-(methylsulfanyl)propanal

3-sulfino-L-alanine

glutathione

thiocyanate

methanethiol

S-sulfanylglutathione

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

taurine

3-(N-morpholino)propanesulfonate

isethionate

1-butanesulfonate

(R)-S-lactoylglutathione

trimethyl sulfonium

sulfate

sulfite

selenite

selenate

selenide

thiosulfate

OH^-

nitrite

nitrate

hydrogensulfite

hydrogencarbonate

molybdate

chloride

phosphate

triphosphate

diphosphate

Fe³⁺

Mg²⁺

Ni²⁺

Cd²⁺

Fe²⁺

Co²⁺

H⁺

K⁺

ammonium

glycine betaine

betaine aldehyde

choline

betaine aldehyde hydrate

aniline

2-iminopropanoate

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

agmatine

4-aminobutanal

cadaverine

spermidine

putrescine

N¹-citryl-N⁶-acetyl-N⁶-hydroxy-L-lysine

aerobactin

4-methylphenol

L-homocysteine

glycerophosphoserine

glycerophosphoglycerol

sn-glycero-3-phosphoethanolamine

sn-glycero-3-phosphocholine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

fluoroacetaldehyde

fluoroacetate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

allantoate

acetamide

(S)-(+)-allantoin

5-amino-4-imidazolecarboxyamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

nicotinamide

ethene

heptadecane

methane

3α,7α,12β-trihydroxy-5β-cholan-24-oate

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

3-dehydrocholate

isocholate

glycocholate

cholate

(+)-7-epi-jasmonate

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

2-methylbutanoyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoyl-CoA

L-carnitinyl-CoA

γ-butyrobetainyl-CoA

crotonobetainyl-CoA

dihomo γ-linolenoyl-CoA

isovaleryl-CoA

3-methylcrotonyl-CoA

isobutanoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

formyl-CoA

oxalyl-CoA

2-methylacetoacetyl-CoA

malonyl-CoA

3'-dephospho-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

4-hydroxybenzoyl-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

succinyl-CoA

acetyl-CoA

(R)-methylmalonyl-CoA

(S)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

(S)-malyl-CoA

(3Z)-dodec-3-enoyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(Z)-15-tetracosenoyl-CoA

propanoyl-CoA

butanoyl-CoA

hexanoyl-CoA

decanoyl-CoA

lauroyl-CoA

octanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

hexadecanedioyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

3-oxooctanoyl-CoA

3-oxododecanoyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

all-trans-retinyl palmitate

L-galactono-1,4-lactone

D-glucono-1,5-lactone

FAD

FADH₂

FMNH₂

FMN

(S)-NADHX

(R)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

caldariellaquinol

ubiquinol-10

ubiquinol-7

ubiquinol-6

ubiquinol-8

ubiquinol-9

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-10

3-demethylubiquinol-7

3-demethylubiquinol-8

3-demethylubiquinol-9

caldariellaquinone

molybdopterin

(R)-lipoate

coenzyme A

MoO₂-molybdopterin cofactor

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

riboflavin

nicotinate

L-ascorbate

thiamine

pyridoxal

pyridoxal 5'-phosphate

pyridoxamine

pyridoxamine 5'-phosphate

pyridoxine

pyridoxine 5'-phosphate

L-carnitine

menadione

all-trans-retinol

(S)-1-pyrroline-5-carboxylate

precorrin-1

precorrin-2

sirohydrochlorin

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-phosphate

7,8-dihydromonapterin triphosphate

molybdopterin adenine dinucleotide

cyclic pyranopterin phosphate

7,8-dihydropterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydromonapterin

7,8-dihydroneopterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

5,6,7,8-tetrahydromonapterin

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

guanine

adenine

2'-deoxyinosine

2'-deoxyguanosine

2'-deoxyadenosine

xanthosine

guanosine

inosine

adenosine

hypoxanthine

dIMP

dGMP

dAMP

dITP

dGTP

dATP

dIDP

dGDP

dADP

IDP

GDP

ADP

GMP

IMP

XMP

AMP

XTP

ITP

GTP

ATP

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

5,6-dihydrothymine

5,6-dihydrouracil

dTDP

dUDP

dCDP

CDP

dTTP

dCMP

dTMP

orotate

dUMP

UDP

uracil

uridine 3'-monophosphate

cytidine-3'-monophosphate

dUTP

UTP

dCTP

CTP

UDP-α-D-galacturonate

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-α-D-glucuronate

UDP-β-L-threo-pentapyranos-4-ulose

UDP-4-amino-4-deoxy-β-L-arabinopyranose

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-α-D-glucose

dTDP-4-acetamido-4,6-dideoxy-α-D-galactose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

cytidine

uridine

2'-deoxycytidine

2'-deoxyuridine

thymidine

thymine

CMP

UMP

isoguanine

preQ₁

acrylonitrile

(indole-3-yl)acetonitrile

preQ₀

salicylaldehyde

4-tyrosol

4-hydroxybenzoate

urate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

3-methoxy-4-hydroxyphenylglycol

benzaldehyde

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

(indol-3-yl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

hydroquinone

menadiol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

protocatechuate

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxyphenylacetate

2,3-dihydroxybenzoate

enterobactin

3-hydroxy-trans-cinnamate

2,3-dihydroxy-trans-cinnamate

trans-cinnamate

salicylate

4-aminobenzoate

benzoate

L-α-amino-ε-keto-pimelate

D-serine

L-serine

β-alanine

L-proline

L-leucine

L-glutamine

glycine

L-alanine

D-glutamate

L-glutamate

L-histidine

L-arginine

L-lysine

L-aspartate

L-cysteine

L-asparagine

L-threonine

L-tyrosine

L-tryptophan

L-phenylalanine

D-cysteine

D-alanine

L-2-amino-3-oxobutanoate

seleno-L-homocysteine

L-selenomethionine

L-aspartyl-4-phosphate

3-phospho-L-serine

N-methyl-L-tryptophan

N⁶-acetyl-N⁶-hydroxy-L-lysine

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-acetyl-L-methionine

N-acetyl-L-glutamate

N⁶-hydroxy-L-lysine

N-carbamoyl-L-aspartate

N-α-acetyl lysine methyl ester

L-citrulline

L-isoleucine

L-valine

L-4-hydroxyglutamate semialdehyde

L-canaline

N⁶-(D-fructosyl)-L-lysine

O-phospho-L-homoserine

L-glutamate-5-semialdehyde

S-sulfo-L-cysteine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-homoserine

O-succinyl-L-homoserine

L-ornithine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-selenocysteine

L-methionine

L,L-diaminopimelate

L-cystathionine

(3E)-2-oxohex-3-enedioate

(2Z,4E,7E)-2-hydroxy-6-oxonona-2,4,7-triene-1,9-dioate

chorismate

succinate

fumarate

(S)-malate

D-glucarate

D-galactarate

3-carboxy-cis,cis-muconate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

cis-aconitate

D-threo-isocitrate

(R)-lactate

(S)-lactate

sophorosyloxydocosanoate

13-sophorosyloxydocosanoate 6',6''-diacetate

13-[O(2')-β-D-glucopyranosyl-β-D-glucopyranosyloxy]docosanoate O(6'')-acetate

pyruvate

acetate

formate

propanoate

butanoate

decanoate

octanoate

3-oxoadipate

1-palmitoyl-2-linoleoyl-phosphatidylcholine

1-linoleoyl-sn-glycero-3-phosphocholine

(15Z)-tetracosenoate

oleate

(3E,5Z)-tetradecadienoate

apo-4'-lycopenoate

di-homo-γ-linolenate

linoleate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

α-linolenate

phytenate

8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-enyl}cyclopentyl]octanoate

stearate

palmitate

(R)-pantoate

D-gluconate

D-mannonate

D-tagaturonate

aldehydo-D-glucuronate

aldehydo-D-galacturonate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

2-oxobutanoate

glyoxylate

4-(methylsulfanyl)-2-oxobutanoate

2-oxoglutarate

a coenzyme-A group

methylglyoxal

diacetyl

3-(N-morpholino)propanal

glycolaldehyde

1-octanal

1-propanal

isobutanal

butan-1-al

formaldehyde

acetaldehyde

(S)-lactaldehyde

phytenal

L-glyceraldehyde

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

aldehydo-D-mannose

β-D-mannopyranose

β-D-ribopyranose

β-D-galactopyranose

α-D-galactopyranose

α-L-rhamnopyranose

β-L-rhamnopyranose

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

aldehydo-L-arabinose

butan-1-ol

propan-1-ol

ethanol

methanol

phytol

glycerol

L-arabinitol

galactitol

D-mannitol

galactitol 1-phosphate

D-mannitol 1-phosphate

D-sorbitol 6-phosphate

(S)-propane-1,2-diol

myo-inositol

D-myo-inositol (1,4,5)-trisphosphate

D-myo-inositol (1,3,4)-trisphosphate

D-myo-inositol (1,3,4,5)-tetrakisphosphate

D-myo-inositol (1,4)-bisphosphate

1D-myo-inositol 4-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 2-monophosphate

1D-myo-inositol 3-monophosphate

1D-myo-inositol 1-monophosphate

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

6-O-α-mycolyl-trehalose 6-phosphate

α, α'-trehalose 6-α-mycolate

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

trehalose-cis-methoxy-mono-mycolate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

trehalose-trans-methoxy-mono-mycolate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

trehalose-cis-keto-mono-mycolate

6-O-trans-keto-mycolyl-trehalose 6-phosphate

trehalose-trans-keto-mono-mycolate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-oleoyl-sn-glycerol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

dioleoyl phosphatidate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

geranyl diphosphate

all-trans-octaprenyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

apo-4'-lycopenal

3-octaprenyl-4-hydroxybenzoate

galactosyl-glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-phosphate

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

4'-α-L-Ara4N-α-Kdo-(2→4)-α-Kdo-(2→6)-[P4'-α-L-ara4N]-lipid A

α-Kdo-(2→6)-lipid IV_A

glucosyl-(heptosyl)₂-Kdo₂-lipid A

glucosyl-(heptosyl)₂-Kdo₂-lipid A-phosphate

galactosyl-(glucosyl)₂-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₃-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

heptosyl-Kdo₂-lipid A

(heptosyl)₂-Kdo₂-lipid A

vanillylamine

ferric-enterobactin complex

ferric-[N-(2,3-dihydroxybenzoyl)-L-serine trimer] complex

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

XLLG xyloglucan oligosaccharide

XLXG xyloglucan oligosaccharide

XXLG xyloglucan oligosaccharide

XXXG xyloglucan oligosaccharide

raffinose

maltotriose

stachyose

maltotetraose

maltoheptaose

maltohexaose

maltopentaose

α-maltose

melibiose

sucrose

α,α-trehalose

α-lactose

keto-D-fructose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-α-D-mannosamine

N-acetyl-β-D-mannosamine

N-acetyl-β-D-glucosamine

β-L-fucopyranose

α-L-fucopyranose

β-D-fructofuranose

L-fuculose

keto-L-rhamnulose

D-xylulose

D-ribulose

L-ribulose

3-dehydro-D-glucopyranose

1-O-acetyl-α-maltose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

3'-ketolactose

a peptidoglycan dimer (mycobacteria)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-ribulose-1,5-bisphosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

N-monoacetylchitobiose 6'-phosphate

N,N'-diacetylchitobiose 6'-phosphate

sucrose 6^G-phosphate

α,α-trehalose 6-phosphate

β-D-cellobiose 6'-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

GDP-α-D-glucose

ADP-α-D-glucose

GDP-4-dehydro-α-D-rhamnose

GDP-α-D-mannose

L-glyceraldehyde 3-phosphate

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

N⁶-(6-phospho-D-fructosyl)-L-lysine

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

4-phospho-D-erythronate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-tagatofuranose 1,6-bisphosphate

β-D-fructose 1,6-bisphosphate

salicin 6-phosphate

arbutin-6-phosphate

D-tagatofuranose 6-phosphate

L-ascorbate 6-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

α-D-galactose 6-phosphate

β-D-galactose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

L-xylulose 5-phosphate

D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-fuculose 1-phosphate

L-rhamnulose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

methyl β-D-glucoside 6-phosphate

aldehydo-L-galactonate

L-gulonate

D-galactonate

L-idonate

D-altronate

adenosine 2',3'-cyclic monophosphate

guanosine 2',3'-cyclic monophosphate

8-oxo-GTP

8-oxo-dGTP

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

pppGpp

ppGpp

cyclic-AMP

adenylo-succinate

adenosine 3'-monophosphate

guanosine 3'-monophosphate

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

2-hydroxy-dATP

5-hydroxy-CTP

5-hydroxy-CMP

reduced β-nicotinamide D-ribonucleotide

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cyclic di-3',5'-guanylate

2-iminosuccinate

2-iminobutanoate

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

L-alanyl-D-glutamate

L-alanyl-L-glutamate

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine