an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

selenodiglutathione

glutathioselenol

3'-phosphoadenylyl-sulfate

N-Formyl-L-kynurenine

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

hydroxypyruvate

autoinducer 2

2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate

2,6-dioxo-6-phenylhexa-3-enoate

N⁵-carboxyaminoimidazole ribonucleotide

(R)-mevalonate diphosphate

(R)-5-phosphomevalonate

2-dehydropantoate

2-iminoacetate

acetyl phosphate

(2E)-2-hydroxypenta-2,4-dienoate

(3E)-2-oxopent-3-enoate

2-oxopent-4-enoate

2-amino-3-carboxymuconate-6-semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

selenophosphate

1-piperideine 6-carboxylate

isochorismate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

O-ureido-L-homoserine

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

(indol-3-yl)acetamide

propionamide

(6E)-8-oxolinalool

(6E)-8-hydroxylinalool

4-methyl-3-oxoadipate-enol-lactone

4-methyl-3-oxoadipate

propane-1,3-diamine

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

(2S)-2-isopropylmalate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

methylamine

(R)-pantothenate

4-aminobutanoate

1,4-dihydroxy-2-naphthoate

N-succinyl-L,L-2,6-diaminopimelate

α-D-glucosamine 1-phosphate

(S)-4-hydroxy-2-oxopentanoate

tartronate semialdehyde

carboxynorspermidine

norspermidine

DNA without lesion

(S)-dihydroorotate

(R)-mevalonate

5-aminolevulinate

cis-3-phenylcyclohexa-3,5-diene-1,2-diol

(S)-4-amino-5-oxopentanoate

glutathionylspermidine

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

S-methyl-5'-thioadenosine

5-(methylsulfanyl)-α-D-ribose

S-ribosyl-L-homocysteine

L-arginino-succinate

canavaninosuccinate

L-canavanine

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

3-hydroxyanthranilate

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

3-keto-β-D-galactose

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

isopentenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

6-phospho D-glucono-1,5-lactone

N⁴-(β-N-acetyl-D-glucosaminyl)-L-asparagine

N-acetyl-β-glucosaminylamine

3-deoxy-D-glycero-2,5-hexodiulosonate

glutathione disulfide

lanthionine

squalene

presqualene diphosphate

prephytoene diphosphate

carbonic acid

porphobilinogen

anthranilate

nicotinate adenine dinucleotide

ammonia

luteolin 7-O-[β-D-glucosyluronate-(1,2)-β-D-glucosiduronate]-4'-O-β-D-glucosiduronate

luteolin 7-O-β-D-glucuronide

γ-L-glutamyl 5-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

propanoyl phosphate

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine 4-sulfate

4-maleyl-acetoacetate

4-fumaryl-acetoacetate

(1R,2R)-cyclohexa-3,5-diene-1,2-diol

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

4-methyl-2-oxopentanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

isoquinoline

isoquinolin-2(1H)-one

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

oxalosuccinate

carbon monoxide

lipid X

ADP-D-glycero-β-D-manno-heptose

ADP-L-glycero-β-D-manno-heptose

2-chloro-4-methyl-cis,cis-muconate

4-methylmuconolactone

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

itaconate

preuroporphyrinogen

(7R)-7-(4-carboxybutanamido)cephalosporanate

glutarate

N-carbamoylputrescine

5-carboxymethyl-2-hydroxymuconate

3-deoxy-α-D-manno-2-octulosonate

1,4-dihydroxy-2-naphthoyl-CoA

histidinal

histidinol

5-oxo-L-proline

(S)-2-amino-6-oxohexanoate

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

4-acetamidobutanal

4-acetamidobutanoate

L-gulono-1,4-lactone

prephenate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

2-oxoglutaramate

lipid A disaccharide (E. coli)

lipid IV_A

(S)-mandelate

(R)-mandelate

2-aminomalonate semialdehyde

luteolin 7-O-β-D-diglucuronide

quinolinate

4-(2-aminophenyl)-2,4-dioxobutanoate

4-(2-amino-3-hydroxyphenyl)-2,4-dioxobutanoate

2-succinylbenzoate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

4'-phosphopantetheine

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

carbamoyl phosphate

3-aminopropanal

2-keto-L-gulonate

D-gluconate 6-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

3-deoxy-D-manno-octulosonate 8-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

xanthine

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

tropine

tropinone

L-selenocystathionine

N-acetylglutamyl-phosphate

2-maleylacetate

diethylthiophosphate

dimethylthiophosphate

diethylphosphate

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

indole-3-glycol

indole-3-glycol aldehyde

isobutanol

3-methylbutanol

3-methylbutanal

2-methylbutanol

2-methylbutanal

2-phenylethanol

salicyl alcohol

methylsalicylate

L-histidinol phosphate

2-oleoylglycerol

2-dehydro-3-deoxy-D-gluconate 6-phosphate

N-(5-phosphoribosyl)-anthranilate

3-phosphooxypyruvate

4-phosphooxy-L-threonine

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

benzoylsuccinyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

aminoacetone

3-β-hydroxyandrost-5-en-17-one 3-sulfate

estrone 3-sulfate

homogentisate

enol-phenylpyruvate

(2-hydroxyphenyl)acetate

ethanolamine

acetoacetate

orotidine 5'-phosphate

coproporphyrinogen III

3-methylbenzyl alcohol

3-methylbenzaldehyde

4-methylbenzyl alcohol

creatinine

(S)-ureidoglycolate

urea

glycolate

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

hydroxyacetone

phosphoenolpyruvate

hydrogen selenide

O-acetyl-L-serine

2-dehydro-3-deoxy-D-galactonate

shikimate

shikimate 3-phosphate

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

2-C-methyl-D-erythritol 4-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

3-keto-L-gulonate

2,3-dioxo-L-gulonate

(L-threonylcarbamoyl)adenylate

4-amino-4-deoxychorismate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

N-acetyl-L-glutamate 5-semialdehyde

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

2-methyl-1,4-benzoquinone

methyl-1,4-benzoquinol

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

glycerone phosphate

CO₂

prenyl diphosphate

oxaloacetate

citrate

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

(E)-2-benzylidenesuccinyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

2,3-didehydroadipyl-CoA

hydrogen peroxide

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

nigerose

3-dehydroquinate

3-dehydroshikimate

β-nicotinate D-ribonucleotide

β-D-ribosylnicotinate

2-dehydro-3-deoxy-D-gluconate

H₂

5-dehydro-4-deoxy-D-glucarate

acetylcholine

H₂O

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2-carboxy-L-threo-pentonate

cyclic- 3,4-O-oxalyl-L-threonate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

kynurenate

xanthurenate

5-hydroxyindole thiazolidine carboxylate

bisorganyltrisulfane

cyclic-2,3-O-oxalyl-L-threonate

2-carboxy-L-xylonolactone

2-dehydro-3-deoxy-D-galactonate 6-phosphate

enolaldehyde

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

2-keto-D-gluconate

2-dehydro-6-phospho-D-gluconate

3-keto-L-gulonate 6-phosphate

L-dehydro-ascorbate

dehydroascorbate (bicyclic form)

(2E,6E)-farnesyl diphosphate

pristanate

4-methylphenol

L-homocysteine

2-iminosuccinate

2-iminobutanoate

2-iminopropanoate

cyanophycin primer-L-aspartate

cyanophycin primer

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

DNA with lesion

phenylacetate

ethylphosphate

adenosylcobalamin

cob(I)alamin

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

3,8-divinyl protochlorophyllide a

magnesium-protoporphyrin IX 13-monomethyl ester

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

chlorophyllide a

protochlorophyllide a

cobalt-factor III

cobalt-precorrin-3

cobalt-sirohydrochlorin

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-5A

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

Mg-protoporphyrin

protoheme

N₂

uroporphyrinogen-I

coproporphyrinogen I

uroporphyrinogen-III

protoporphyrinogen IX

protoporphyrin IX

siroheme

(Z,Z)-bilirubin-IX α

(Z,Z)-biliverdin-IX α

S⁰

hydrogen sulfide

oxygen

2-chloroacetate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

2,3-diphospho-D-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

1-oleoyl-2-lyso-glycerone phosphate

CMP-N-acetyl-β-neuraminate

(R)-citramalate

5,10-methenyltetrahydrofolate mono-L-glutamate

superoxide

nitric oxide

hydroxyl radical

monodehydroascorbate radical

parathion

paraoxon

4-nitrophenol

N-acetyl-β-neuraminate

S-(hydroxymethyl)glutathione

dimethyl sulfide

methionol

3-(methylsulfanyl)propanal

glutathione

methanethiol

S-sulfanylglutathione

5-(2-hydroxyethyl)-4-methylthiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

L-cysteate

3-sulfopyruvate

(2R)-3-sulfolactate

N-acetyl-D-galactosamine 6-O-sulfate

(2R)-phospho-3-sulfolactate

trimethyl sulfonium

sulfate

sulfite

selenite

selenate

selenide

thiosulfate

OH^-

nitrite

nitrate

hydrogensulfite

hydrogencarbonate

chloride

phosphonate

phosphate

triphosphate

diphosphate

Fe³⁺

ammonium

H⁺

Mg²⁺

Cu²⁺

Zn²⁺

Fe²⁺

Co²⁺

glycine betaine

betaine aldehyde hydrate

choline

betaine aldehyde

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

agmatine

N¹-acetylspermine

N¹-acetylspermidine

putrescine

spermidine

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

fluoroacetaldehyde

fluoroacetate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

3,5-dichloro-2-methyl-muconolactone

3,5-dichloro-2-methyl-muconate

2-chloro-5-methyl-dienelactone

3-chloro-cis,cis-muconate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

2-chloro-5-methyl-maleylacetate

3-chloro-2-methyl-dienelactone

3-chloro-2-methyl-maleylacetate

3-chlorobenzyl alcohol

3-chlorobenzaldehyde

2,4-dichlorotoluene

(1R,2S)-4,6-dichloro-3-methylcyclohexa-3,5-diene-1,2-diol

4,6-dichloro-3-methylcatechol

allantoate

acetamide

isopenicillin N

penicillin N

cephalosporin C

(7R)-7 aminocephalosporanate

deacetylcephalosporin C

(S)-(+)-allantoin

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

nicotinamide

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

estrone

androst-4-ene-3,17-dione

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androsta-1,4-diene-3,17-dione

3-β-hydroxyandrost-5-en-17-one

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

isovaleryl-CoA

phenylacetyl-CoA

2-methylbutanoyl-CoA

(+)-7-epi-jasmonoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

(3E)-dec-3-enoyl-CoA

trans-caffeoyl-CoA

trans-feruloyl-CoA

vinylacetyl-CoA

3-methylcrotonyl-CoA

3-methylglutaconyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

(5Z)-tetradecenoyl-CoA

6-cis-tridecenoyl-CoA

4-cis-undecenoyl-CoA

6-trans-tridecenoyl-CoA

4-trans-undecenoyl-CoA

5-cis, 7-trans-tetradecadienoyl-CoA

2-trans, 5-cis, 7-trans-tetradecatrienoyl-CoA

itaconyl-CoA

3'-dephospho-CoA

γ-linolenoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

(3E)-undec-3-enoyl-CoA

(E)-glutaconyl-CoA

malonyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

6-cis, 3-oxo-tridecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3R)-hydroxy-5-trans-dodecenoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

4-hydroxybenzoyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

2-methylacetoacetyl-CoA

methylacrylyl-CoA

(2E,5Z)-tetradecenoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

(3S)-hydroxyadipyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-hydroxyisovaleryl-CoA

(E)-2-methylcrotonoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

2-trans-nonenoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

acetyl-CoA

succinyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E)-octadec-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

phytanoyl-CoA

(S)-malyl-CoA

(3Z)-dodec-3-enoyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

cerotoyl-CoA

2-carboxy-cerotoyl-CoA

(Z)-15-tetracosenoyl-CoA

butanoyl-CoA

propanoyl-CoA

lauroyl-CoA

hexanoyl-CoA

decanoyl-CoA

octanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

2-hydroxyphytanoyl-CoA

pristanoyl-CoA

hexadecanedioyl-CoA

3-oxoadipyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

3-oxododecanoyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

3-oxooctanoyl-CoA

3-oxo-myristoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-palmitoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

all-trans-retinyl palmitate

5-chloro-3-methyl-cis-dienelactone

cis-dienelactone

trans-dienelactone

L-homoserine lactone

PAI-1

HAI-1

PAI-1-2

VAI-1

VAI-1-2

AAI-1

D-glucono-1,5-lactone

FMNH₂

FMN

FAD

FADH₂

(S)-NADHX

(R)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

menaquinol-6

menaquinol-7

menaquinol-8

demethylmenaquinol-6

demethylmenaquinol-7

demethylmenaquinol-8

coenzyme A

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

nicotinate

riboflavin

thiamine

L-ascorbate

pyridoxamine

pyridoxine

pyridoxal

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

menadione

all-trans-retinol

(S)-1-pyrroline-5-carboxylate

precorrin-1

precorrin-2

sirohydrochlorin

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydropterin

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin 3'-triphosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydropteroate

guanine

adenine

2'-deoxyadenosine

2'-deoxyguanosine

2'-deoxyinosine

guanosine

inosine

xanthosine

adenosine

hypoxanthine

dAMP

dGMP

dATP

dGTP

dITP

dADP

dGDP

dIDP

GDP

IDP

ADP

GMP

IMP

XMP

AMP

GTP

ITP

ATP

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

uridine 3'-monophosphate

cytidine-3'-monophosphate

dTDP

dCTP

dUDP

dUTP

dCMP

dCDP

UTP

uracil

dTTP

CTP

CDP

UDP

orotate

dUMP

dTMP

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-galactose

UDP-α-D-galactofuranose

UDP-α-D-glucose

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-glucuronate

UDP-α-D-galacturonate

UDP-N-acetyl-α-D-mannosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

UDP-α-D-xylose

dTDP-α-D-glucose

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

CDP-α-D-paratose

CDP-α-tyvelose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

cytidine

uridine

2'-deoxycytidine

thymidine

2'-deoxyuridine

CMP

UMP

isoguanine

preQ₁

2',4,4',6'-tetrahydroxychalcone

baicalein

6,7-dehydrobaicalein

luteolin

(indole-3-yl)acetonitrile

preQ₀

biphenyl

urate

4-tyrosol

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

benzyl alcohol

4-hydroxybenzoate

salicylaldehyde

3-methoxy-4-hydroxyphenylglycol

amino-parathion

methyl parathion

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

benzaldehyde

4-methylbenzaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

menadiol

6-hydroxy-2-(6-oxo-1-oxaspiro[2.5]octa-4,7-dien-2-yl)-1-benzofuran-3-one

6-hydroxy-2-[hydroxy-(4-hydroxyphenyl)methyl]-1-benzofuran-3-one

2-[hydroperoxy(4-hydroxyphenyl)methyl]-6-hydroxy-1-benzofuran-3-one

4-aminophenol

biphenyl-2,3-diol

protocatechuate

catechol

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

salicylate

4-aminobenzoate

benzoate

4-methylbenzoate

3-oxo-dodecanoate

3-oxooctanoate

L-2-aminoadipate

L-kynurenine

L-α-amino-ε-keto-pimelate

D-serine

L-serine

creatine

β-alanine

L-leucine

L-proline

glycine

L-alanine

L-glutamine

D-glutamate

L-glutamate

L-histidine

N^ω-hydroxy-L-arginine

L-arginine

L-lysine

L-aspartate

L-asparagine

L-threonine

L-tyrosine

L-cysteine

L-tryptophan

L-phenylalanine

cis-4-hydroxy-D-proline

D-proline

D-alanine

L-aspartyl-4-phosphate

L-saccharopine

S-sulfanyl-L-cysteine

seleno-L-homocysteine

L-2-amino-3-oxobutanoate

3-phospho-L-serine

sarcosine

N-(3-oxooctanoyl)-L-homoserine

N-(3-hydroxybutanoyl)-L-homoserine

N-(3-oxododecanoyl)-L-homoserine

N-(butyryl)-L-homoserine

N-(3-oxohexanoyl)-L-homoserine

N-(octanoyl)-L-homoserine

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

trans-4-hydroxy-L-proline

3-hydroxy-L-kynurenine

O-acetyl-L-homoserine

L-citrulline

L-isoleucine

L-valine

L-glutamate-5-semialdehyde

O-phospho-L-homoserine

L-aspartate 4-semialdehyde

L-ornithine

L-cystine

L-homoserine

S-sulfo-L-cysteine

hypoglycin A

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-4-hydroxyglutamate semialdehyde

O-succinyl-L-homoserine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-selenocysteine

L-methionine

L-2,4-diaminobutanoate

L-cystathionine

L,L-diaminopimelate

3-methyl-cis,cis-muconate

chorismate

succinate

fumarate

(S)-malate

D-galactarate

D-glucarate

3-carboxy-cis,cis-muconate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

cis-aconitate

D-threo-isocitrate

(R)-3-hydroxybutanoate

(S)-lactate

(R)-lactate

pyruvate

acetate

formate

propanoate

butanoate

decanoate

octanoate

3-oxoadipate

3-oxohexanoate

(15Z)-tetracosenoate

oleate

(3E,5Z)-tetradecadienoate

γ-linolenate

linoleate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

apo-4'-lycopenoate

phytenate

8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-enyl}cyclopentyl]octanoate

dinor-12-oxo-phytodienoate

palmitate

leukotriene-E4

leukotriene-D4

(R)-pantoate

D-mannonate

D-gluconate

D-tagaturonate

β-D-glucuronate

aldehydo-D-galacturonate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

2-oxobutanoate

glyoxylate

2-oxoglutarate

a coenzyme-A group

methylglyoxal

diacetyl

glycolaldehyde

3-acetamidopropanal

butan-1-al

1-octanal

formaldehyde

1-propanal

isobutanal

acetaldehyde

(R)-lactaldehyde

(S)-lactaldehyde

phytenal

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

β-D-ribopyranose

α-D-galactopyranose

β-D-galactopyranose

α-D-xylopyranose

L-sorbosone

β-L-rhamnopyranose

α-L-rhamnopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

butan-1-ol

propan-1-ol

methanol

ethanol

1-octanol

phytol

glycerol

xylitol

L-iditol

D-sorbitol

(S)-propane-1,2-diol

myo-inositol

scyllo-inosose

1-amino-1-deoxy-scyllo-inositol

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-oleoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-heptaprenyl diphosphate

geranylgeranyl diphosphate

all-trans-octaprenyl diphosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

apo-4'-lycopenal

all-trans-phytoene

all-trans phytofluene

15-cis-phytoene

3-octaprenyl-4-hydroxybenzoate

α-Kdo-(2→6)-lipid IV_A

betanidin

betanidin quinone

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

XXLG xyloglucan oligosaccharide

XLXG xyloglucan oligosaccharide

XLLG xyloglucan oligosaccharide

XXXG xyloglucan oligosaccharide

selaginose

raffinose

maltotriose

stachyose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

α-maltose

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine

allolactose

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl--D-galactosamine 6-sulfate

melibiose

sucrose

α,α-trehalose

α-lactose

keto-L-sorbose

keto-D-fructose

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-α-D-mannosamine

N-acetyl-β-D-galactosamine

N-acetyl-β-D-glucosamine

L-sorbosone 1,4-lactone

L-sorbosone 2,6-lactone

β-D-fructofuranose

D-xylulose

L-ribulose

D-ribulose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

3'-ketolactose

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (S. aureus)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

sucrose 6^F-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

GDP-α-D-glucose

ADP-α-D-glucose

GDP-α-D-mannose

GDP-4-dehydro-α-D-rhamnose

GDP-β-L-fucose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

4-phospho-D-erythronate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

L-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-rhamnulose 1-phosphate

L-fuculose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

L-gulonate

D-galactonate

D-altronate

adenosine 2',3'-cyclic monophosphate

guanosine 2',3'-cyclic monophosphate

1-(5-phospho-β-D-ribosyl)-AMP

cyclic-GMP

guanosine 3'-monophosphate

adenosine 3'-monophosphate

cyclic-AMP

ppGpp

pppGpp

1-(5-phospho-β-D-ribosyl)-ATP

5'-deoxyadenosine

adenylo-succinate

8-oxo-GTP

8-oxo-dGTP

5-hydroxy-CTP

2-hydroxy-dATP

reduced β-nicotinamide D-ribonucleotide

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cyclic di-3',5'-guanylate

hypoglycin B

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate